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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000088_pilon:790747..793512- Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >MSTRG.11961.1.p1 ID=MSTRG.11961.1.p1|Name=MSTRG.11961.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2766bp|location=Sequence derived from alignment at sc0000088_pilon:790747..793512- (Clytia hemisphaerica_ch_hm2_pilon)
ATAATTTATAAAAGTTTGAACCTTATTCATTCACCATTTGATTTATTTTG
TATTTTCTAGTAAAAAAATAATTGAAAAAAGATAAGATATATCCATTGAA
AACTATCTACTGAGAGATCAACATACAAACAAGCTTACAACCATGGAAAG
GTTTGTATTTTTCACACATGACCCAGAATTCCTCTCGAAAAAGGTATTTT
TCGTAGTCACCGTCCCAGGCCCGGTACTAGGTTAACTAAATGACGGAGGG
TGCCGTCCGGTTTTCGGCCCTCGTACCCTTACTGGGACTAAAAAGGAGAA
AATTCGGAAAGTGAATTTTGCAACCCCTATTTGGACAAATTTCGATGTTT
TTAGGGGAAAAAAAATGGGACTGAGATTTAATTTTCTGATTTTTCCACAC
TTACCCGTACCTTCACTTGCCTAAGTACCCCCTCCCTGGTCACTGCGAAA
TCCCAAATATCTGGAATATTTTCCAGTCCACCAAAAATCTTTTCAATTTT
TCAAATTTCAGAGTGAGTATTGCTATTTGTGGCCTGGGTCGAGCCGGTTC
AATCCACACAGGGAACTGTGTACGAAACCCACGTGTACACATCAAATATT
TCGTAGAGATTGACACAGCACGTGCTGAAGAAGTGAAACGAAATTTTGGG
TTGAACGATACTATTGTGGTACATACTGATGATTTCAAGAAAGTACAAGG
TAAAACTTTTTTGTCTGATCTTATCTTTTTCGTGGGAAAAATACACGGGA
TGACGGGGTTTCAAGGTGACTTACGGTGATGGTAAAAGCCAGATTTTTAT
CTCGGGATATGGTATTTGGTGAAAACCACAGAGGAACGGTACACAATTTT
CAACTAGAAATATTTTGTCATTATTATAGCTCTTACAGTTCGAACATCAC
ATGGATTGAAATAAGATTGTTCGAGTTCGGGAGACTGAGTTTGTAGAGAT
TCTTGGTTTGAGAATTTAATTATTAAAATAAATTATTCTCGAGTTGTGGA
AAGATTCGAGGTAAAGAGTTTACTGACAAAAGAAAACGGACAGCCAGCCA
CCTGCTGAAAAAACCTAATCTTCTCTATTCTTGATTTTGTAGACGATCCA
GAGGTTAAAGGAGTGATCATAGCAACAGTGACTTATACACACGAATTCTT
CGTCAAGAAATGCATCGAAGCTAAGAAGACCATCTTCTGTGAAAAACCAA
TCGCTGAGTCGTTAAAAGATACAGGTATTGAAACCATAATAATCCTTATT
AAATCTACTGTGAAAAGTTTGGAAATCCTTTTCATTGATGAAAAATGCTC
GTTTTAAAGCACTGCCATCAAAGCTTGTCAAGGCTCATCGATATAACAAA
CGCGCAACAAACTACTCTAAAGAGACATGTTAGTCTAATCTAACAGAGGA
GGCTGATTCATAATAACATTGATTGGTTTCTGATTCAATATCGAATCATT
TTCCATTTCTAGTTTCTTGCTACGAGGAAGCCGAACGCAACGGCGTTTCG
TTATTCTGTGCATTCAACCGCCGTTTTGATGAAACACACGCGTCCCTCAA
GAACGCCGTCGCTCAAGGAGAAATCGGAAAAGTACACATGGTAAAAGTCT
GCAGTCGTGACTCACCATTGCCAAGTGAAGCCTACCTCAAAATATCGGGC
GGTATTTTCCACGACTGCGCTGTCCACGATATCGATATGGCGTCATGGGT
GTTAGGTGAATACCCTGTAGAAGTATTTACTTACGCGCATGCGTTTCGAA
AGTTCATTGCAGATATGAATGATGTTGATACGGTGTCCATTTCAATGAAA
TTTCCGTCTGGTGCTATCGGACAAATTGATTTGTCACGTCTTGCCGTAAG
TGAGCATTAGTATATTCTTTTCGCGTAGAAGCTTTGTTTGAGACTGCAAA
ATATTCATCCTACGGTCTTATTAGGGTAACATGCACTTTTTTATGTTATT
TGATACAGTTTTAAATTCGGAGTAAGAAGTTCTTAAAAAAGAAACTTTCA
GAAACTTATTCTCAAATGTCAATCATCAGTTGGGTTGAAATAAAAATGTC
CTGGGTGAAGAGATTTTCAACGAATTATCAAGGTCCTCAGTTAAGTATTT
TATCTTACCAAGCATCTATTTTGACCATAGGTGTATGGTTACGATCAACG
TGTAGAAGTTCTCGGTGATAAAGGAATGCTCCAATCAGAAAACCAACACA
AGACTTCATTACGAAAATCCACCCAATCAAGTGTCAGTAACGACTTGTTG
AAATTCTCTTTTCCTCAACGTTATCCTGAAGGTTATGCTGCAGAGATAGA
TCATTTCTTAGAGGTCATTGGTGGAAAACAACCATGTATTAGTAAAACAG
ATGTGGCAATGATCAGCTTGATTGCTTCAGCTTGCGAAGAATCGCATAAG
GCAGGAAAACCAATGAGAATTAACAAGGATGCTTTGACGTATGAACCAGT
CCTTTGATTGGCTATGCTAAATGACATGTTTTGAAAAGAAACTTGACTTA
GTAACATGAATTGTGTGCGACCGTCGCGTAGATTCTTTTTTCAAAACTTA
ATAATTTTTTTTTTGTGAACAATTATAAAATTAGGGTAATGTTTTTTAAA
ATTACTCTTTTAACGACAAATTTGTATTAGAAACCAATTCTGTTAGATGC
ACTGCACCAAAAATATTGTATAGAACCAAATTAACTCAAATTGATATTAT
TATTAACTACACTCTTTTTGGACCTGCCCCGGTGGAGGTCCTATAAATCA
ACCTGTGTTTGTTCGT Coding sequence (CDS) from alignment at sc0000088_pilon:790747..793512- >MSTRG.11961.1.p1 ID=MSTRG.11961.1.p1|Name=MSTRG.11961.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5190bp|location=Sequence derived from alignment at sc0000088_pilon:790747..793512- (Clytia hemisphaerica_ch_hm2_pilon)
GTGTATGGTTACGATCAACGTGTAGAAGTTCTCGGTGATAAAGGAATGCT
CCAATCAGAAAACCAACACAAGACTTCATTACGAAAATCCACCCAATCAA
GTGTCAGTAACGACTTGTTGAAATTCTCTTTTCCTCAACGTTATCCTGAA
GGTTATGCTGCAGAGATAGATCATTTCTTAGAGGTCATTGGTGGAAAACA
ACCATGTATTAGTAAAACAGATGTGGCAATGATCAGCTTGATTGCTTCAG
CTTGCGAAGAATCGCATAAGGCAGGAAAACCAATGAGAATTAACAAGGAT
GCTTTGACGTATGAACCAGTCCTTTGATTTCTTGCTACGAGGAAGCCGAA
CGCAACGGCGTTTCGTTATTCTGTGCATTCAACCGCCGTTTTGATGAAAC
ACACGCGTCCCTCAAGAACGCCGTCGCTCAAGGAGAAATCGGAAAAGTAC
ACATGGTAAAAGTCTGCAGTCGTGACTCACCATTGCCAAGTGAAGCCTAC
CTCAAAATATCGGGCGGTATTTTCCACGACTGCGCTGTCCACGATATCGA
TATGGCGTCATGGGTGTTAGGTGAATACCCTGTAGAAGTATTTACTTACG
CGCATGCGTTTCGAAAGTTCATTGCAGATATGAATGATGTTGATACGGTG
TCCATTTCAATGAAATTTCCGTCTGGTGCTATCGGACAAATTGATTTGTC
ACGTCTTGCCACGATCCAGAGGTTAAAGGAGTGATCATAGCAACAGTGAC
TTATACACACGAATTCTTCGTCAAGAAATGCATCGAAGCTAAGAAGACCA
TCTTCTGTGAAAAACCAATCGCTGAGTCGTTAAAAGATACAGAGTGAGTA
TTGCTATTTGTGGCCTGGGTCGAGCCGGTTCAATCCACACAGGGAACTGT
GTACGAAACCCACGTGTACACATCAAATATTTCGTAGAGATTGACACAGC
ACGTGCTGAAGAAGTGAAACGAAATTTTGGGTTGAACGATACTATTGTGG
TACATACTGATGATTTCAAGAAAGTACAAGATGGAAAGGTGTATGGTTAC
GATCAACGTGTAGAAGTTCTCGGTGATAAAGGAATGCTCCAATCAGAAAA
CCAACACAAGACTTCATTACGAAAATCCACCCAATCAAGTGTCAGTAACG
ACTTGTTGAAATTCTCTTTTCCTCAACGTTATCCTGAAGGTTATGCTGCA
GAGATAGATCATTTCTTAGAGGTCATTGGTGGAAAACAACCATGTATTAG
TAAAACAGATGTGGCAATGATCAGCTTGATTGCTTCAGCTTGCGAAGAAT
CGCATAAGGCAGGAAAACCAATGAGAATTAACAAGGATGCTTTGACGTAT
GAACCAGTCCTTTGATTTCTTGCTACGAGGAAGCCGAACGCAACGGCGTT
TCGTTATTCTGTGCATTCAACCGCCGTTTTGATGAAACACACGCGTCCCT
CAAGAACGCCGTCGCTCAAGGAGAAATCGGAAAAGTACACATGGTAAAAG
TCTGCAGTCGTGACTCACCATTGCCAAGTGAAGCCTACCTCAAAATATCG
GGCGGTATTTTCCACGACTGCGCTGTCCACGATATCGATATGGCGTCATG
GGTGTTAGGTGAATACCCTGTAGAAGTATTTACTTACGCGCATGCGTTTC
GAAAGTTCATTGCAGATATGAATGATGTTGATACGGTGTCCATTTCAATG
AAATTTCCGTCTGGTGCTATCGGACAAATTGATTTGTCACGTCTTGCCAC
GATCCAGAGGTTAAAGGAGTGATCATAGCAACAGTGACTTATACACACGA
ATTCTTCGTCAAGAAATGCATCGAAGCTAAGAAGACCATCTTCTGTGAAA
AACCAATCGCTGAGTCGTTAAAAGATACAGAGTGAGTATTGCTATTTGTG
GCCTGGGTCGAGCCGGTTCAATCCACACAGGGAACTGTGTACGAAACCCA
CGTGTACACATCAAATATTTCGTAGAGATTGACACAGCACGTGCTGAAGA
AGTGAAACGAAATTTTGGGTTGAACGATACTATTGTGGTACATACTGATG
ATTTCAAGAAAGTACAAGATGGAAAGGTGTATGGTTACGATCAACGTGTA
GAAGTTCTCGGTGATAAAGGAATGCTCCAATCAGAAAACCAACACAAGAC
TTCATTACGAAAATCCACCCAATCAAGTGTCAGTAACGACTTGTTGAAAT
TCTCTTTTCCTCAACGTTATCCTGAAGGTTATGCTGCAGAGATAGATCAT
TTCTTAGAGGTCATTGGTGGAAAACAACCATGTATTAGTAAAACAGATGT
GGCAATGATCAGCTTGATTGCTTCAGCTTGCGAAGAATCGCATAAGGCAG
GAAAACCAATGAGAATTAACAAGGATGCTTTGACGTATGAACCAGTCCTT
TGATTTCTTGCTACGAGGAAGCCGAACGCAACGGCGTTTCGTTATTCTGT
GCATTCAACCGCCGTTTTGATGAAACACACGCGTCCCTCAAGAACGCCGT
CGCTCAAGGAGAAATCGGAAAAGTACACATGGTAAAAGTCTGCAGTCGTG
ACTCACCATTGCCAAGTGAAGCCTACCTCAAAATATCGGGCGGTATTTTC
CACGACTGCGCTGTCCACGATATCGATATGGCGTCATGGGTGTTAGGTGA
ATACCCTGTAGAAGTATTTACTTACGCGCATGCGTTTCGAAAGTTCATTG
CAGATATGAATGATGTTGATACGGTGTCCATTTCAATGAAATTTCCGTCT
GGTGCTATCGGACAAATTGATTTGTCACGTCTTGCCACGATCCAGAGGTT
AAAGGAGTGATCATAGCAACAGTGACTTATACACACGAATTCTTCGTCAA
GAAATGCATCGAAGCTAAGAAGACCATCTTCTGTGAAAAACCAATCGCTG
AGTCGTTAAAAGATACAGAGTGAGTATTGCTATTTGTGGCCTGGGTCGAG
CCGGTTCAATCCACACAGGGAACTGTGTACGAAACCCACGTGTACACATC
AAATATTTCGTAGAGATTGACACAGCACGTGCTGAAGAAGTGAAACGAAA
TTTTGGGTTGAACGATACTATTGTGGTACATACTGATGATTTCAAGAAAG
TACAAGATGGAAAGGTGTATGGTTACGATCAACGTGTAGAAGTTCTCGGT
GATAAAGGAATGCTCCAATCAGAAAACCAACACAAGACTTCATTACGAAA
ATCCACCCAATCAAGTGTCAGTAACGACTTGTTGAAATTCTCTTTTCCTC
AACGTTATCCTGAAGGTTATGCTGCAGAGATAGATCATTTCTTAGAGGTC
ATTGGTGGAAAACAACCATGTATTAGTAAAACAGATGTGGCAATGATCAG
CTTGATTGCTTCAGCTTGCGAAGAATCGCATAAGGCAGGAAAACCAATGA
GAATTAACAAGGATGCTTTGACGTATGAACCAGTCCTTTGATTTCTTGCT
ACGAGGAAGCCGAACGCAACGGCGTTTCGTTATTCTGTGCATTCAACCGC
CGTTTTGATGAAACACACGCGTCCCTCAAGAACGCCGTCGCTCAAGGAGA
AATCGGAAAAGTACACATGGTAAAAGTCTGCAGTCGTGACTCACCATTGC
CAAGTGAAGCCTACCTCAAAATATCGGGCGGTATTTTCCACGACTGCGCT
GTCCACGATATCGATATGGCGTCATGGGTGTTAGGTGAATACCCTGTAGA
AGTATTTACTTACGCGCATGCGTTTCGAAAGTTCATTGCAGATATGAATG
ATGTTGATACGGTGTCCATTTCAATGAAATTTCCGTCTGGTGCTATCGGA
CAAATTGATTTGTCACGTCTTGCCACGATCCAGAGGTTAAAGGAGTGATC
ATAGCAACAGTGACTTATACACACGAATTCTTCGTCAAGAAATGCATCGA
AGCTAAGAAGACCATCTTCTGTGAAAAACCAATCGCTGAGTCGTTAAAAG
ATACAGAGTGAGTATTGCTATTTGTGGCCTGGGTCGAGCCGGTTCAATCC
ACACAGGGAACTGTGTACGAAACCCACGTGTACACATCAAATATTTCGTA
GAGATTGACACAGCACGTGCTGAAGAAGTGAAACGAAATTTTGGGTTGAA
CGATACTATTGTGGTACATACTGATGATTTCAAGAAAGTACAAGATGGAA
AGGTGTATGGTTACGATCAACGTGTAGAAGTTCTCGGTGATAAAGGAATG
CTCCAATCAGAAAACCAACACAAGACTTCATTACGAAAATCCACCCAATC
AAGTGTCAGTAACGACTTGTTGAAATTCTCTTTTCCTCAACGTTATCCTG
AAGGTTATGCTGCAGAGATAGATCATTTCTTAGAGGTCATTGGTGGAAAA
CAACCATGTATTAGTAAAACAGATGTGGCAATGATCAGCTTGATTGCTTC
AGCTTGCGAAGAATCGCATAAGGCAGGAAAACCAATGAGAATTAACAAGG
ATGCTTTGACGTATGAACCAGTCCTTTGATTTCTTGCTACGAGGAAGCCG
AACGCAACGGCGTTTCGTTATTCTGTGCATTCAACCGCCGTTTTGATGAA
ACACACGCGTCCCTCAAGAACGCCGTCGCTCAAGGAGAAATCGGAAAAGT
ACACATGGTAAAAGTCTGCAGTCGTGACTCACCATTGCCAAGTGAAGCCT
ACCTCAAAATATCGGGCGGTATTTTCCACGACTGCGCTGTCCACGATATC
GATATGGCGTCATGGGTGTTAGGTGAATACCCTGTAGAAGTATTTACTTA
CGCGCATGCGTTTCGAAAGTTCATTGCAGATATGAATGATGTTGATACGG
TGTCCATTTCAATGAAATTTCCGTCTGGTGCTATCGGACAAATTGATTTG
TCACGTCTTGCCACGATCCAGAGGTTAAAGGAGTGATCATAGCAACAGTG
ACTTATACACACGAATTCTTCGTCAAGAAATGCATCGAAGCTAAGAAGAC
CATCTTCTGTGAAAAACCAATCGCTGAGTCGTTAAAAGATACAGAGTGAG
TATTGCTATTTGTGGCCTGGGTCGAGCCGGTTCAATCCACACAGGGAACT
GTGTACGAAACCCACGTGTACACATCAAATATTTCGTAGAGATTGACACA
GCACGTGCTGAAGAAGTGAAACGAAATTTTGGGTTGAACGATACTATTGT
GGTACATACTGATGATTTCAAGAAAGTACAAGATGGAAAG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000088_pilon | genome | sc0000088_pilon:790747..793512 - |
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