MSTRG.11612.1.p1 (mRNA) -

Overview
NameMSTRG.11612.1.p1
Unique NameMSTRG.11612.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:1229358..1232129-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11612.1.p1 ID=MSTRG.11612.1.p1|Name=MSTRG.11612.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2772bp|location=Sequence derived from alignment at sc0000084_pilon:1229358..1232129- (Clytia hemisphaerica_ch_hm2_pilon)
CATATTCTAACTTTTTTTCAGATACTTAAAAAGAACTTAAATTTCAGAAA
TAAAAATGGAAGAAAAATCTCCTGTTATTGAAACTGGTAAGTATAAAAAC
CTCTTTACCTTTCTATTCTAAATTTTATATTTCCTTTGATTGTTATTTTG
GTAACTGCAGGATTGTTCAAATTCTATCCCTTTACACCTTTTTTTTGTAT
TTTGCAAAACTAATCAAACTATGTACATGAATTTGAAATTTTCCAACTCC
ACTCACAAATATCTTTCCAAAGATTTTATAACGATTGAAGAATTCCTTCA
AAGGTATAAGGAAAAGGAAAAAGGTATAAATACAGGCATAAGGAAAAAAT
TGCACACTTATCACGAACAGAACTTTTAATATTAAAATTTACTCTTCAGA
TCCTGCTGAAGCAACTGAAGTGTTTGGAACACCAAAGAGAAAACTAACAA
AAACCGAAGGTAGTTATCTTATCTCCTTTATGTTTATTCTGAATTTTCTG
TTAATTTTATTTTCCATTTAATAAAGATGATCGAGTGGTAAATCGCCCTG
TTTGAAAAGTCAAGATTTAAAAAAATGTCTGAATGTTAAATCATATTTTT
AACAATAGGTACGCCAGCAAAAAGAATTTACTACTCTCCATCCACACCCT
CAACAAAAACACCAACTAAAGACAGTGATAAGATCGGTAAGTGAATGCAG
AGCTTGTGAATTAAGTTTTTTATATTTTTTCATAAACATTGTTGAAGAAT
TATAATATCCTAAAAATAATATTCAGTCAACCCACATTTTTGATGAAGTC
CCATTTACATGATTAAACTCACATCATATTTATAAATCGACTTTTTGAAA
CTGGATCTGGGTTTGGTACTATTGAACGGACCATATTCTCAGTAAAGGTC
AGGAACTGCTTTCATTTCCAATGGGTTACCAAAGTATTTTAATATTTCCT
TTCATTTTGATTGCTACTTTCAAGCTAAAGTATTCTTTACTCTGTTTAGA
TATGACTGGTTATATCACCAATGTTACCGAAATTGTAACAAGCCGCAAGT
CAGGCAATGATTACTTTGACGTTTATTTGAAGACATCACCTACTGTACAA
GAAGTGATTCGTGTTATGATAAAACACAACAGATCGATTAAAAGATCTTT
CTTTTCAGAAGCTAAAGAGATTCCTGTCAAAATAACCAACCTGACGAAAC
GAGACAACGTCAGCTTTTTTAACTCAAACTTCAATAGCTCATCACTCGTC
AAAACCCATCTTACTACATCGTTTGACTTCGCCGCTGATAATTTATTTTC
TTCAATTGACCACGTTAACACCTTTGAAAAAGGAACATTTAATATCAAAG
GTGCCTTTATCTGGTCATCGGCAGAAACCAAAGCGAAGAAGAAAGATGGT
TCAATGGAGAGAGTTAGAGATGGAGTGATTGTACAACGAGAAGATAGTAC
CATTTCAGTTTCCGTGTGGGGAAAACTAATTGATTCCATGTCCAAAGAAA
GAGTATGTTACGAGTTCATACCCTTAAGACTGAAGCAACTCTATGGGCAC
CCGAAATTAGCTACAGAACCAACAAGTTCAATCAAGCTATCAAAAGATGT
CATTGAAGTTAATTGGGATAAAGTTGAAACACTTGATTGGAAAAAAGTCG
AACAAGATTTTCACGACAATCACTTCCCAACAATACCAGGATCGATAATT
GGATGTTCCGTAGATTTATTTCCGAAATGTGTCTTTTGCAAGAAAAAAAT
CAACATCCCTCAAAATGAAAAGATGTTTTCCTGTCCGTTATGCAACGAAA
GACTAATTACCAAAAAACTGCATTTTGGTTTTGCTGGCCGAATGGAGGTA
GAAAATGGTGAAGACACCCTGTCCCTTACGTTTTTTAAGGAAGTTATGCA
TCCTTTTCTTGGAAAGAATTTTGAATTACAAGATAAACAAACCATTGAAG
ATAAGATTCTTGAATTATCAGATTGTGTCAAGATCACGTATTCGAAGAGT
AAACTTGTTGTAACCAATATTTTGGAAGTGGAAGAGGAGGATGATTTGAT
ATAGAAACTTGGATTTAACACTATGATAGATACTGTACGGAAACTCCTTT
GTCATTTACCTTGTTCCATTGTTTTATTTTTTAGTCTTATTGTTATCATT
CATTTAGGATAGTACACACTTTTCTATTAAAACAACTATAATTACACGGG
TAAAATTGTTGCCTAATCCCCACATAACTCGGGTCTATTGTAAAGAAGCA
TGTCTGCTTTTACACACCATCTAGAAACAGTATGTGCAGGCATATACCGT
TTATAGATGGTTTCTTCATATTGTATTCATTTTACAGAAATTTTCTGATT
TATTTGGAAAACTCATATTCTTACCACAGAGTTTGTATGTAGTTTGTATT
TTCTTGAACACGTGTTCTTTTGTTTTATGTTATTTTTCTATTAGGGATAA
GATTCATTTTACAGAAACTTTCTCATTATTTGAAAAACTCAAATTTTTAC
CACAGAGTTTGTATGTAGTTTGTATTTTTTTGAACAAAGATTCTTTTATG
TTATTATTCTATTAGGGATAAGAGATTCATTTTACAGAAACTTTCTCATT
ATTTGAAAAACTCAAATTTTTTACCACAGAGTTTGTATGTAGTTTGTATT
TTTTGAACAAAACGTTCTTTTGTTTTATTTTTCTTAAGGGATGGGGATAA
AAGAATTATCTCATGTAACAGTATGTAAACGTAAACCATCAAATAAGTTT
TTTCGTCTGTACCTTAATTCAG

Coding sequence (CDS) from alignment at sc0000084_pilon:1229358..1232129-

>MSTRG.11612.1.p1 ID=MSTRG.11612.1.p1|Name=MSTRG.11612.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4896bp|location=Sequence derived from alignment at sc0000084_pilon:1229358..1232129- (Clytia hemisphaerica_ch_hm2_pilon)
ATATGACTGGTTATATCACCAATGTTACCGAAATTGTAACAAGCCGCAAG
TCAGGCAATGATTACTTTGACGTTTATTTGAAGACATCACCTACTGTACA
AGAAGTGATTCGTGTTATGATAAAACACAACAGATCGATTAAAAGATCTT
TCTTTTCAGAAGCTAAAGAGATTCCTGTCAAAATAACCAACCTGACGAAA
CGAGACAACGTCAGCTTTTTTAACTCAAACTTCAATAGCTCATCACTCGT
CAAAACCCATCTTACTACATCGTTTGACTTCGCCGCTGATAATTTATTTT
CTTCAATTGACCACGTTAACACCTTTGAAAAAGGAACATTTAATATCAAA
GGTGCCTTTATCTGGTCATCGGCAGAAACCAAAGCGAAGAAGAAAGATGG
TTCAATGGAGAGAGTTAGAGATGGAGTGATTGTACAACGAGAAGATAGTA
CCATTTCAGTTTCCGTGTGGGGAAAACTAATTGATTCCATGTCCAAAGAA
AGAGTATGTTACGAGTTCATACCCTTAAGACTGAAGCAACTCTATGGGCA
CCCGAAATTAGCTACAGAACCAACAAGTTCAATCAAGCTATCAAAAGATG
TCATTGAAGTTAATTGGGATAAAGTTGAAACACTTGATTGGAAAAAAGTC
GAACAAGATTTTCACGACAATCACTTCCCAACAATACCAGGATCGATAAT
TGGATGTTCCGTAGATTTATTTCCGAAATGTGTCTTTTGCAAGAAAAAAA
TCAACATCCCTCAAAATGAAAAGATGTTTTCCTGTCCGTTATGCAACGAA
AGACTAATTACCAAAAAACTGCATTTTGGTTTTGCTGGCCGAATGGAGGT
AGAAAATGGTGAAGACACCCTGTCCCTTACGTTTTTTAAGGAAGTTATGC
ATCCTTTTCTTGGAAAGAATTTTGAATTACAAGATAAACAAACCATTGAA
GATAAGATTCTTGAATTATCAGATTGTGTCAAGATCACGTATTCGAAGAG
TAAACTTGTTGTAACCAATATTTTGGAAGTGGAAGAGGAGGATGATTTGA
TATAGGTACGCCAGCAAAAAGAATTTACTACTCTCCATCCACACCCTCAA
CAAAAACACCAACTAAAGACAGTGATAAGATCGATCCTGCTGAAGCAACT
GAAGTGTTTGGAACACCAAAGAGAAAACTAACAAAAACCGAAGATGGAAG
AAAAATCTCCTGTTATTGAAACTGATATGACTGGTTATATCACCAATGTT
ACCGAAATTGTAACAAGCCGCAAGTCAGGCAATGATTACTTTGACGTTTA
TTTGAAGACATCACCTACTGTACAAGAAGTGATTCGTGTTATGATAAAAC
ACAACAGATCGATTAAAAGATCTTTCTTTTCAGAAGCTAAAGAGATTCCT
GTCAAAATAACCAACCTGACGAAACGAGACAACGTCAGCTTTTTTAACTC
AAACTTCAATAGCTCATCACTCGTCAAAACCCATCTTACTACATCGTTTG
ACTTCGCCGCTGATAATTTATTTTCTTCAATTGACCACGTTAACACCTTT
GAAAAAGGAACATTTAATATCAAAGGTGCCTTTATCTGGTCATCGGCAGA
AACCAAAGCGAAGAAGAAAGATGGTTCAATGGAGAGAGTTAGAGATGGAG
TGATTGTACAACGAGAAGATAGTACCATTTCAGTTTCCGTGTGGGGAAAA
CTAATTGATTCCATGTCCAAAGAAAGAGTATGTTACGAGTTCATACCCTT
AAGACTGAAGCAACTCTATGGGCACCCGAAATTAGCTACAGAACCAACAA
GTTCAATCAAGCTATCAAAAGATGTCATTGAAGTTAATTGGGATAAAGTT
GAAACACTTGATTGGAAAAAAGTCGAACAAGATTTTCACGACAATCACTT
CCCAACAATACCAGGATCGATAATTGGATGTTCCGTAGATTTATTTCCGA
AATGTGTCTTTTGCAAGAAAAAAATCAACATCCCTCAAAATGAAAAGATG
TTTTCCTGTCCGTTATGCAACGAAAGACTAATTACCAAAAAACTGCATTT
TGGTTTTGCTGGCCGAATGGAGGTAGAAAATGGTGAAGACACCCTGTCCC
TTACGTTTTTTAAGGAAGTTATGCATCCTTTTCTTGGAAAGAATTTTGAA
TTACAAGATAAACAAACCATTGAAGATAAGATTCTTGAATTATCAGATTG
TGTCAAGATCACGTATTCGAAGAGTAAACTTGTTGTAACCAATATTTTGG
AAGTGGAAGAGGAGGATGATTTGATATAGGTACGCCAGCAAAAAGAATTT
ACTACTCTCCATCCACACCCTCAACAAAAACACCAACTAAAGACAGTGAT
AAGATCGATCCTGCTGAAGCAACTGAAGTGTTTGGAACACCAAAGAGAAA
ACTAACAAAAACCGAAGATGGAAGAAAAATCTCCTGTTATTGAAACTGAT
ATGACTGGTTATATCACCAATGTTACCGAAATTGTAACAAGCCGCAAGTC
AGGCAATGATTACTTTGACGTTTATTTGAAGACATCACCTACTGTACAAG
AAGTGATTCGTGTTATGATAAAACACAACAGATCGATTAAAAGATCTTTC
TTTTCAGAAGCTAAAGAGATTCCTGTCAAAATAACCAACCTGACGAAACG
AGACAACGTCAGCTTTTTTAACTCAAACTTCAATAGCTCATCACTCGTCA
AAACCCATCTTACTACATCGTTTGACTTCGCCGCTGATAATTTATTTTCT
TCAATTGACCACGTTAACACCTTTGAAAAAGGAACATTTAATATCAAAGG
TGCCTTTATCTGGTCATCGGCAGAAACCAAAGCGAAGAAGAAAGATGGTT
CAATGGAGAGAGTTAGAGATGGAGTGATTGTACAACGAGAAGATAGTACC
ATTTCAGTTTCCGTGTGGGGAAAACTAATTGATTCCATGTCCAAAGAAAG
AGTATGTTACGAGTTCATACCCTTAAGACTGAAGCAACTCTATGGGCACC
CGAAATTAGCTACAGAACCAACAAGTTCAATCAAGCTATCAAAAGATGTC
ATTGAAGTTAATTGGGATAAAGTTGAAACACTTGATTGGAAAAAAGTCGA
ACAAGATTTTCACGACAATCACTTCCCAACAATACCAGGATCGATAATTG
GATGTTCCGTAGATTTATTTCCGAAATGTGTCTTTTGCAAGAAAAAAATC
AACATCCCTCAAAATGAAAAGATGTTTTCCTGTCCGTTATGCAACGAAAG
ACTAATTACCAAAAAACTGCATTTTGGTTTTGCTGGCCGAATGGAGGTAG
AAAATGGTGAAGACACCCTGTCCCTTACGTTTTTTAAGGAAGTTATGCAT
CCTTTTCTTGGAAAGAATTTTGAATTACAAGATAAACAAACCATTGAAGA
TAAGATTCTTGAATTATCAGATTGTGTCAAGATCACGTATTCGAAGAGTA
AACTTGTTGTAACCAATATTTTGGAAGTGGAAGAGGAGGATGATTTGATA
TAGGTACGCCAGCAAAAAGAATTTACTACTCTCCATCCACACCCTCAACA
AAAACACCAACTAAAGACAGTGATAAGATCGATCCTGCTGAAGCAACTGA
AGTGTTTGGAACACCAAAGAGAAAACTAACAAAAACCGAAGATGGAAGAA
AAATCTCCTGTTATTGAAACTGATATGACTGGTTATATCACCAATGTTAC
CGAAATTGTAACAAGCCGCAAGTCAGGCAATGATTACTTTGACGTTTATT
TGAAGACATCACCTACTGTACAAGAAGTGATTCGTGTTATGATAAAACAC
AACAGATCGATTAAAAGATCTTTCTTTTCAGAAGCTAAAGAGATTCCTGT
CAAAATAACCAACCTGACGAAACGAGACAACGTCAGCTTTTTTAACTCAA
ACTTCAATAGCTCATCACTCGTCAAAACCCATCTTACTACATCGTTTGAC
TTCGCCGCTGATAATTTATTTTCTTCAATTGACCACGTTAACACCTTTGA
AAAAGGAACATTTAATATCAAAGGTGCCTTTATCTGGTCATCGGCAGAAA
CCAAAGCGAAGAAGAAAGATGGTTCAATGGAGAGAGTTAGAGATGGAGTG
ATTGTACAACGAGAAGATAGTACCATTTCAGTTTCCGTGTGGGGAAAACT
AATTGATTCCATGTCCAAAGAAAGAGTATGTTACGAGTTCATACCCTTAA
GACTGAAGCAACTCTATGGGCACCCGAAATTAGCTACAGAACCAACAAGT
TCAATCAAGCTATCAAAAGATGTCATTGAAGTTAATTGGGATAAAGTTGA
AACACTTGATTGGAAAAAAGTCGAACAAGATTTTCACGACAATCACTTCC
CAACAATACCAGGATCGATAATTGGATGTTCCGTAGATTTATTTCCGAAA
TGTGTCTTTTGCAAGAAAAAAATCAACATCCCTCAAAATGAAAAGATGTT
TTCCTGTCCGTTATGCAACGAAAGACTAATTACCAAAAAACTGCATTTTG
GTTTTGCTGGCCGAATGGAGGTAGAAAATGGTGAAGACACCCTGTCCCTT
ACGTTTTTTAAGGAAGTTATGCATCCTTTTCTTGGAAAGAATTTTGAATT
ACAAGATAAACAAACCATTGAAGATAAGATTCTTGAATTATCAGATTGTG
TCAAGATCACGTATTCGAAGAGTAAACTTGTTGTAACCAATATTTTGGAA
GTGGAAGAGGAGGATGATTTGATATAGGTACGCCAGCAAAAAGAATTTAC
TACTCTCCATCCACACCCTCAACAAAAACACCAACTAAAGACAGTGATAA
GATCGATCCTGCTGAAGCAACTGAAGTGTTTGGAACACCAAAGAGAAAAC
TAACAAAAACCGAAGATGGAAGAAAAATCTCCTGTTATTGAAACTG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11612MSTRG.11612Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11612.1.p1MSTRG.11612.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11612.1.p1.exon4MSTRG.11612.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11612.1.p1.exon3MSTRG.11612.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11612.1.p1.exon2MSTRG.11612.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11612.1.p1.exon1MSTRG.11612.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:1229358..1232129 -