MSTRG.10729.1.p1 (mRNA) -

Overview
NameMSTRG.10729.1.p1
Unique NameMSTRG.10729.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000075_pilon:1221683..1225007+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10729.1.p1 ID=MSTRG.10729.1.p1|Name=MSTRG.10729.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3325bp|location=Sequence derived from alignment at sc0000075_pilon:1221683..1225007+ (Clytia hemisphaerica_ch_hm2_pilon)
tGacaaaTTTGTATTAAAGTAATCCTTGAATCACCGCACTAAACCGTTTC
ATCTATATAATGCTATTTTTAATAGGGAATGGACAGAAAATGGTCAGCTA
TGGATTCAACAGGTCTCCAGCACACCAGCCACAAGAATGGATGTCGTCAA
TCTTCAGGTTTGATATACTACAATTTTATGTAATTCTGACCTCAGgaatt
atatttcttatattggCTTAGCTACCTTACTTGACTGAAAATCGATTAAA
GTTTAGATAgaatcgatattttacgtggatagtccaataatctaggactt
ttaggcagtctttcgattgttttcacggggtccacggccagctggcttgg
ctatctatgaactgaacagaacattggaaggagggggattcgaaccgcga
acccctggtttaagacgctgacgcctttgaccacttggccatcgctccgt
TAGGATAACTGATGTTTAGATCAAATATGGTATAATTAACATACAAAACG
GATAGATGATATAGAATGTTCAGTTTGAAAGTGTTGCTGTGTAAAATAGT
TTTTGATAGTGAAAACAGGGTATTTCTGGTAACTCTGTTTCATTTCTTAT
ATGTAGGAACAACTTGATATGCGATTACAGCAAAGGCAAGCCAGAGAAAC
TGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTCGGTATGT
ATAGCTTGGCTCTTCCTGATTGCTTGATATAAAATCTATAACCCTTATCG
CGTGGTATCGAATCCTGAAACAAGTAAAAGATAAAACCTGATCGATAATT
TCAATGATTAAATTTCGAAACATTCATAAAAAATGTgacatgttttattt
tgattttcggTTACACATATCATATGGCTTTATAATGTTTCACTAATGCA
CCTTCTAGGCATACTCTTTtgtagaaagaaaataaattatgaattCGAAA
GAAACTGAAAGCACGCTCATCAATAGCTTAGCTCCTggcaagatttttta
attatacatttatttttttttccattgcAGATGAACTGATCCGACAAGTG
ACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGTGATGA
AATCCGAATGACTATTGCTGCATACCAAACATTATATGAAAGCAGGTTTG
TATAAAGCATATTTTGCAAAAACTACAAATATTTTTACTCACACTTAGTA
TAAAGTTCAATTCCTCTTGTGTTTTACATAGTTACAGAGCCTGGATGTCA
AAATATTATTCATAATATTGACTTTAATTATTGCTACTTTGGATTACCAA
AAAGTATTTCCTTTTTAACAGTGTCGCATTTGGCATGAGAAAAGCATTAC
AAGCGGAGCACGGCAAAACAGATATGGAGAAAAGGGTATGTTTTTAGTTT
TGTAATCTTATCTTTAGTCTTCTCCTTTAGTAGCCTCTAAAATGTGGGAG
CAATTCTTTTTGGTcttatttttgttgatttttgacaCCCAGGTAAGCAA
TGTTTCATAATTATTGAGCAAGTATTACACATTAATTACTTATCAATAGT
TACCTGTGCTTTATAACTTGTATCATAGATTGTTGAGTTAGATGAAGAAA
AATCGGAGCTCGAAAAACAAGTGAATGACTTGAAAGCTAAATGTGATGCA
ATCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAGAAGAAACACGC
TGAGGAAATCCAATTCTTGAAGAGAACCAATCAGCAGTTAAAGGTCTGTT
TCGTTCATCTGGTAGACATTCAAAAAGTCTATTTAATATGCTTTCTTTTT
CCCCGACGGAGAGCGTTTTAAGTTACTTCATTggtaaaaaaagttctttt
taaaaTCGTTTCGAGAAGTTGCGAGTAGCACACGCGGGGTCAaattacat
tattttcaaatattttatgaaaatttcttccataTGAATGATACTGAGAG
GTgtatcatttgaaaaaatacttcgaaaaatcgaaaaatattgataaTtT
CAATCGGACTACTTATCAAACTTTCACCGTTTCTTTTTAGACGCAATTGG
AAGGTATAATTGCTCCATCGAAGAAGTAAACATTGGTATATCGGATTGTA
CGAGTGTTATTGTGCATCAAACTGTTTTGGAAACAGATCCAGTCTTCATG
CGCGAAAATAAATATTTTTCTCATTGTAAATTGTTCCTGATAAATTATTT
TTCTACAAATTTAATTTTGATGATTTTTTTTTCTTAGTAGTAATAATGAC
AGTGAAGTAATAAGCGGAAAAGCTGAATTGTAGTGTTGACATTCGTGAAG
AAAATGCAACAAAATGGAAGAACATTCGTCAATATTAAAGAAGTAATTCA
TGATATGCACCACTGCAATGACTTCACGAAATTAtgcaacttttctgttt
ttgttccacccaatacgtcactttttctattgcttaggtgacgtattggg
tggaaaattttaaaagttctcagaagactttccagtggtgcatatcatga
acagGACATTCGAAAGAGAGAAACTTATGTTTCTAAATAAGCCTATTCCA
GTTCTTTGAATGCCattgtataagaaatttaatcacTTTTCGATCGATAT
AGGATTGCATTAAAACTGCCGTGGCGGCACGTTTGCCAGACCTGTATCCT
AGAACGCCATGGCCTATCCGCCTTTTCAACATATAGAAAACTTGTAAATA
ACTTTATTTCGTTGTAATTATTAATTTAGGGCTTTAAGTAATATATTAAG
TATTATACCAAAACCtaggaatttatttttttctaacagAGTGCATTatt
ctagtattttttcagtttgaagtatgttatttttcaagaaatattatttt
tgagTGCTAACACTAACATTGTAAATCACGATTTCAGTTCAATTAACCCT
TTGCTTTGAGCAACTTCCTATTTCTAACTAGGGGGAGCATCTAggggggg
ggCTTGAGGCcccctttttctcaaaattgcaGATgcgatggagtttttat
aagatacttttaaataattggtcatttgaagtaataaatgacgcgttctt
tagaaaaagtaacaaaattgctttgttactggttaacgaccaaccaaatc
aaataagggcttgtaaaaactccatctcgtcccgttTTAACATGTGACTT
CAGAcattaggatctcaggatccaaatgttcaaaaatggtccaataaggc
tcataatatagcctggaggtctatgaacccgagccaaattgaaatatccg
attaagggctctggtcatagtgaaaaatcaatctcagaatttgaagataa
aaccttatgttttcgcttctttgac

Coding sequence (CDS) from alignment at sc0000075_pilon:1221683..1225007+

>MSTRG.10729.1.p1 ID=MSTRG.10729.1.p1|Name=MSTRG.10729.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2952bp|location=Sequence derived from alignment at sc0000075_pilon:1221683..1225007+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATGTCGTCAATCTTCAGGAACAACTTGATATGCGATTACAGCAAAG
GCAAGCCAGAGAAACTGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCC
AATGTTTCGATGAACTGATCCGACAAGTGACCATCAACTGCGCTGAACGC
GGTTTATTGTTGTTGAGAGTTCGTGATGAAATCCGAATGACTATTGCTGC
ATACCAAACATTATATGAAAGCAGTGTCGCATTTGGCATGAGAAAAGCAT
TACAAGCGGAGCACGGCAAAACAGATATGGAGAAAAGGATTGTTGAGTTA
GATGAAGAAAAATCGGAGCTCGAAAAACAAGTGAATGACTTGAAAGCTAA
ATGTGATGCAATCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAGA
AGAAACACGCTGAGGAAATCCAATTCTTGAAGAGAACCAATCAGCAGTTA
AAGACGCAATTGGAAGGTATAATTGCTCCATCGAAGAAGTAAATGGATGT
CGTCAATCTTCAGGAACAACTTGATATGCGATTACAGCAAAGGCAAGCCA
GAGAAACTGGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTC
GATGAACTGATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATT
GTTGTTGAGAGTTCGTGATGAAATCCGAATGACTATTGCTGCATACCAAA
CATTATATGAAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCG
GAGCACGGCAAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGA
AAAATCGGAGCTCGAAAAACAAGTGAATGACTTGAAAGCTAAATGTGATG
CAATCGAGAAACGCGAGACCGAGCGACGTGCCATTGAGGAGAAGAAACAC
GCTGAGGAAATCCAATTCTTGAAGAGAACCAATCAGCAGTTAAAGACGCA
ATTGGAAGGTATAATTGCTCCATCGAAGAAGTAAATGGATGTCGTCAATC
TTCAGGAACAACTTGATATGCGATTACAGCAAAGGCAAGCCAGAGAAACT
GGTATCTGTCCTGTCCGTCGTGAACTTTACTCCCAATGTTTCGATGAACT
GATCCGACAAGTGACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGA
GAGTTCGTGATGAAATCCGAATGACTATTGCTGCATACCAAACATTATAT
GAAAGCAGTGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGG
CAAAACAGATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGG
AGCTCGAAAAACAAGTGAATGACTTGAAAGCTAAATGTGATGCAATCGAG
AAACGCGAGACCGAGCGACGTGCCATTGAGGAGAAGAAACACGCTGAGGA
AATCCAATTCTTGAAGAGAACCAATCAGCAGTTAAAGACGCAATTGGAAG
GTATAATTGCTCCATCGAAGAAGTAAATGGATGTCGTCAATCTTCAGGAA
CAACTTGATATGCGATTACAGCAAAGGCAAGCCAGAGAAACTGGTATCTG
TCCTGTCCGTCGTGAACTTTACTCCCAATGTTTCGATGAACTGATCCGAC
AAGTGACCATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGT
GATGAAATCCGAATGACTATTGCTGCATACCAAACATTATATGAAAGCAG
TGTCGCATTTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAACAG
ATATGGAGAAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGAA
AAACAAGTGAATGACTTGAAAGCTAAATGTGATGCAATCGAGAAACGCGA
GACCGAGCGACGTGCCATTGAGGAGAAGAAACACGCTGAGGAAATCCAAT
TCTTGAAGAGAACCAATCAGCAGTTAAAGACGCAATTGGAAGGTATAATT
GCTCCATCGAAGAAGTAAATGGATGTCGTCAATCTTCAGGAACAACTTGA
TATGCGATTACAGCAAAGGCAAGCCAGAGAAACTGGTATCTGTCCTGTCC
GTCGTGAACTTTACTCCCAATGTTTCGATGAACTGATCCGACAAGTGACC
ATCAACTGCGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGTGATGAAAT
CCGAATGACTATTGCTGCATACCAAACATTATATGAAAGCAGTGTCGCAT
TTGGCATGAGAAAAGCATTACAAGCGGAGCACGGCAAAACAGATATGGAG
AAAAGGATTGTTGAGTTAGATGAAGAAAAATCGGAGCTCGAAAAACAAGT
GAATGACTTGAAAGCTAAATGTGATGCAATCGAGAAACGCGAGACCGAGC
GACGTGCCATTGAGGAGAAGAAACACGCTGAGGAAATCCAATTCTTGAAG
AGAACCAATCAGCAGTTAAAGACGCAATTGGAAGGTATAATTGCTCCATC
GAAGAAGTAAATGGATGTCGTCAATCTTCAGGAACAACTTGATATGCGAT
TACAGCAAAGGCAAGCCAGAGAAACTGGTATCTGTCCTGTCCGTCGTGAA
CTTTACTCCCAATGTTTCGATGAACTGATCCGACAAGTGACCATCAACTG
CGCTGAACGCGGTTTATTGTTGTTGAGAGTTCGTGATGAAATCCGAATGA
CTATTGCTGCATACCAAACATTATATGAAAGCAGTGTCGCATTTGGCATG
AGAAAAGCATTACAAGCGGAGCACGGCAAAACAGATATGGAGAAAAGGAT
TGTTGAGTTAGATGAAGAAAAATCGGAGCTCGAAAAACAAGTGAATGACT
TGAAAGCTAAATGTGATGCAATCGAGAAACGCGAGACCGAGCGACGTGCC
ATTGAGGAGAAGAAACACGCTGAGGAAATCCAATTCTTGAAGAGAACCAA
TCAGCAGTTAAAGACGCAATTGGAAGGTATAATTGCTCCATCGAAGAAGT
AA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10729MSTRG.10729Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10729.1.p1MSTRG.10729.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10729.1.p1.exon1MSTRG.10729.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10729.1.p1.exon2MSTRG.10729.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10729.1.p1.exon3MSTRG.10729.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10729.1.p1.exon4MSTRG.10729.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10729.1.p1.exon5MSTRG.10729.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10729.1.p1.exon6MSTRG.10729.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000075_pilongenomesc0000075_pilon:1221683..1225007 +