MSTRG.11572.1.p1 (mRNA) -

Overview
NameMSTRG.11572.1.p1
Unique NameMSTRG.11572.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000084_pilon:797475..801797+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11572.1.p1 ID=MSTRG.11572.1.p1|Name=MSTRG.11572.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4323bp|location=Sequence derived from alignment at sc0000084_pilon:797475..801797+ (Clytia hemisphaerica_ch_hm2_pilon)
ATTCCCCTCCTaagtttgaatattttcataCCGATTCAGCCCAATATGGG
GTAAATTTATATATTACTTAAATACAAatcatcattttatttttccagat
tattaaaagtgaaaataaagatgatttgaaaaaaaaggcaATTTGAGAGT
ATCATTTAACTAAGGCTGGTTGGTCATGTCTTTATCTCGAGACCGTCTCA
AACAATTAGAGGAAGTTGAAAAGGACGTTGTGGTAGTCATTGAATCTGCT
TCTCAGTCTCTCTTGGAATTGTCAAAACAACAACCATCTGAAGAATACGT
TATTGCAAGAACCACCGAATTTTTAAAAGGTATCAGATcttatttcattt
gtttattcactaattcattcatttcattcttgtatcgatttagtctcgca
ttcattcattcattctcatattcattcatttcttccttcatttattcgtt
cattcattcattcattcattcattcacacatatattcattgcgaattaac
catacattattgcattcatttcTTCCTTCATTATTTCATCTCTATCTATA
TTCTTACAAtcattcagtttgcattcgttctttctagcacttttccattc
attcattcattcattcacttaaccatacattattgcattaattttttcat
tcattattgcatCCGTATATTCTTACAATCATTTAGTTTGCATTCGTTCT
TTCTAGCACTTTTCTGTTaattcatttattcattcattcattcaaataaT
TTACTTTATTTCATAGGACTTGAAGGCGTTGAGCGAAAATTAAACGAGCA
TATTTCGTACTTGAGTCAAGTCTCCACAAATCAACAACACGAAGGCAGCA
TTTACTCTGAAGAAAAACGTTTCCAATTAGTTTGCGAGAGCACTGATATT
GTCTTGAAGAGGATCAAGGCACTAGAGAAGAGAGTTTACCCTAAAAAGGA
AACTTAAATTAAAAGGTACATATGACTTTCTACTACAACCATGGACAGAA
ATGTAAGAAACAAACACTTTCATGATTTTGCGtttttttACTGCCAAATT
ATACAGACTTGTTGATACAGACTTTATTCCCGGATGATACCTTATTTCGC
GAAATCTATGAGATTAAATCCCCCATTAAGGGACTTCCTTTACAACGAAT
TTAATGAGGTAAAGAGTAATCAAAACTAGGCCAACATCAAGCAGCATAAA
GACCTATTACATAATCATaaggaaatATAAAATTTGTTGAATAAGACATT
CCTTTCATTCGGCTTATATGTGTCTGATATGAAACGGGAAAACTATGTAA
AACTAAAGCTTTTAATACTCAGAAATAGGTTTATATATAACAACATTTTA
ATTTCTCTTTTCTTAGAGCATCATACCTTTTCATCGAATCCAATTTCGTA
ATGATCTCCCAATTCTTCAttctttctgaaCGCGGTGACACATTAGCATA
TCGAGATTACCGTGGCGATGTTGTGTCAATCACTCCAGAAATCTTTCATA
GGCGTTTGAAAATGTTACGCACAAATGGCACACATCCACCACCGATATTT
AACGTCGAAGGCACGCAATTCGTATACATCATTCAATACGGGTTATATTT
CGTATGCACCACTATTGAGAATGTCTCGCCTGCTTTTATATTAGagtttt
tacagaaaatcgCATCTTTGTGTAAAGACTATTGTGGCGTGGTACATGAG
GAAGCTGTACGCTATAACTTTGCTTTAATTTACGAACTCTTAGATGAAGT
GTTGGATTATGGGTATCCACAGTCCACCTCGACTGATGAATTAAAGGAGT
TTATTTTTAACGAACCGCATCCATTGCAACGTTCAAGCGCCGCTCCAAAA
CCCCTTCCAACGATGAATTTATTTGGCGCCCCTTCCGCCCCCGATAAAAA
AGTTGCCGCCAGCTCGGCTCCCATGAAATCAGTCatgaaagagaaaaatg
aagtttttattGACGTCATTGAAAGACTGACTGTGGTGGTTTCAGACAAT
GGCCAAATTATTAAATACCATTTAGACGGATGTATTAAAGTTCAGAGTTT
CCTAGCCGGGAGTCCACAAATCCGAATTGATTTGAACGAGAATTTACGTA
TAAGGAACTGGGAAAATAATGCGGTTAACCGTGATATGACGAGTGCTATA
TTCGACGATGTTTCATTGCATGAGTGTGTCAACCAAGATGAATTCGAGAA
ACACAGATCCCTTTTATTTTCTCCACCCGCCGGTGGATGGGTGGCTTTCC
GCTATAGCATTTTCAATCTGTCAGAATTACCGTTTCAAGTAAATTCGTTT
TTAGAAGAGTCAGGGGATGATACGCTTGTATTGCGTTTACGTGTTCGCTG
CACTGTACCATCACAACATCACGCTGTTGCCGTAGCCGTCACCGTACCGT
TACCGAAATCAACAACAAATGATCCGTCGCTTGGCAACCCAGCCATGgaa
tataaacaaaaagagaaactCTTGGTTTGGAACATAAAGCGTATCCACGG
CGGTTCAGAACAATCatgtaatatcaaaattaaCGTACCCACAATCACTA
GGAAATGTAAACAAGAGTTCGGTCCCGTACGTTTAACTTTTGAGTTCCCA
GCTTTCGTTAAATCTGGTCTGAAAGTGAAAACACTAAAAGTCATCGAAGC
GAATGGTATGTACACACCAGCACGTTGGATTCGATATATTACGCATACTG
ATTCTTTTGAAGTTCGATTTTAAGATAATTGTTTAGTTTTAGATTTTCTA
GATTTGATTAGAACCCTTGTTTGAAGGACACACATTAGTttgttttgtca
aatttttaaagattgaaattttcgaaatgcTACTATAACAATTGTTTTCA
GGAACACTAAgttatgttttttcttcttcattacaAAAGGTTTGAAATCA
CAatgctctgaattatcttttcaatggtaattttttattaattatattat
tatattattagtTAGAACTGAAGCATTGATTGAACCGACAAACCTCTGGA
GCAGACATTTTAATTTGTTTCGACTCGTTTAATAGAAATCTCTCTTGCTA
TCTTTTCTTGAttcttggtatttttttatttcaagatagattttattttt
tgctatattagcattttatGTAGGATGCTGTGATTGCATTGCCAAATGCG
AGCGAAGAAGAAATAAACGAATAAACGTTTATGAAATACGACTTCTTTGa
ttaaaattgtaatttttggcACATGTTTTCTTTCTTACCGCTTCCCATTC
AACCAAGATGAATTCGAGAAACACAGATCCCTTTTATTTTCTCCACCCGC
CGGTGGATGGGTGGCTTTCCGCTATAGCATTTTCAATCTGTCAGAATTAC
CGTTTCAAGTAAATTCGTTTTTAGAAGAGTCAGGGGATGATACGCTTGTA
TTGCGTTTACGTGTTCGCTGCACTGTACCATCACAACATCACGCTGTTGC
CGTAGCCGTCACCGTACCGTTACCGAAATCAACAACAAATGATCCGTCGC
TTGGCAACCCAGCCATGgaatataaacaaaaagagaaactCTTGGTTTGG
AACATAAAGCGTATCCACGGCGGTTCAGAACAATCatgtaatatcaaaat
taaCGTACCCACAATCACTAGGAAATGTAAACAAGAGTTCGGTCCCGTAC
GTTTAACTTTTGAGTTCCCAGCTTTCGTTAACTCTGGTCTGAAAGTGAAA
ACACTAAAAGTCATCGAAGCGAATGGTATGTACACACCAGCACGTTGGAT
TCGATATATTACGCATACTGATTCTTTTGAAGTTCGATTTTAAGATAATT
GTTTAGTTTTAGATTTTCTAGATTTGATTAGAACCCTTGTTTGAAGGACA
CACATTAGTttgttttgtcaaatttttaaagattgaaattttcgaaatgc
TACTATAACAATTGTTTTCAGGAACACTAAgttctgaattatcttttcaa
tggtaattttttattaattatattattatattattagtTAGAACTGAAGC
ATTGATTGAACCGACAAACCTCTTGAGCAGACATTTTAATTTGTTTCGAC
TCGTTTAATAGAAATCTCTCTTGCTATCTTTTCTTGAttcttggtatttt
tttatttcaagatagattttattttttgctatattagcattttatGTAGT
ATGCTGTGATTGCATTGCCAAATGCGAGCGAAGAAGAAATAAACGAATAA
ACGTTTATGAAATACGACTTCTTTGattaaaattgtaatttttggcACAT
GTTTTCTTTCTTACCGCTTCCCTCTGAaacattgattgattgattgattg
attgattgattgattgattgatt

Coding sequence (CDS) from alignment at sc0000084_pilon:797475..801797+

>MSTRG.11572.1.p1 ID=MSTRG.11572.1.p1|Name=MSTRG.11572.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1323bp|location=Sequence derived from alignment at sc0000084_pilon:797475..801797+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATCTCCCAATTCTTCAttctttctgaaCGCGGTGACACATTAGCATA
TCGAGATTACCGTGGCGATGTTGTGTCAATCACTCCAGAAATCTTTCATA
GGCGTTTGAAAATGTTACGCACAAATGGCACACATCCACCACCGATATTT
AACGTCGAAGGCACGCAATTCGTATACATCATTCAATACGGGTTATATTT
CGTATGCACCACTATTGAGAATGTCTCGCCTGCTTTTATATTAGagtttt
tacagaaaatcgCATCTTTGTGTAAAGACTATTGTGGCGTGGTACATGAG
GAAGCTGTACGCTATAACTTTGCTTTAATTTACGAACTCTTAGATGAAGT
GTTGGATTATGGGTATCCACAGTCCACCTCGACTGATGAATTAAAGGAGT
TTATTTTTAACGAACCGCATCCATTGCAACGTTCAAGCGCCGCTCCAAAA
CCCCTTCCAACGATGAATTTATTTGGCGCCCCTTCCGCCCCCGATAAAAA
AGTTGCCGCCAGCTCGGCTCCCATGAAATCAGTCatgaaagagaaaaatg
aagtttttattGACGTCATTGAAAGACTGACTGTGGTGGTTTCAGACAAT
GGCCAAATTATTAAATACCATTTAGACGGATGTATTAAAGTTCAGAGTTT
CCTAGCCGGGAGTCCACAAATCCGAATTGATTTGAACGAGAATTTACGTA
TAAGGAACTGGGAAAATAATGCGGTTAACCGTGATATGACGAGTGCTATA
TTCGACGATGTTTCATTGCATGAGTGTGTCAACCAAGATGAATTCGAGAA
ACACAGATCCCTTTTATTTTCTCCACCCGCCGGTGGATGGGTGGCTTTCC
GCTATAGCATTTTCAATCTGTCAGAATTACCGTTTCAAGTAAATTCGTTT
TTAGAAGAGTCAGGGGATGATACGCTTGTATTGCGTTTACGTGTTCGCTG
CACTGTACCATCACAACATCACGCTGTTGCCGTAGCCGTCACCGTACCGT
TACCGAAATCAACAACAAATGATCCGTCGCTTGGCAACCCAGCCATGgaa
tataaacaaaaagagaaactCTTGGTTTGGAACATAAAGCGTATCCACGG
CGGTTCAGAACAATCatgtaatatcaaaattaaCGTACCCACAATCACTA
GGAAATGTAAACAAGAGTTCGGTCCCGTACGTTTAACTTTTGAGTTCCCA
GCTTTCGTTAAATCTGGTCTGAAAGTGAAAACACTAAAAGTCATCGAAGC
GAATGGTATGTACACACCAGCACGTTGGATTCGATATATTACGCATACTG
ATTCTTTTGAAGTTCGATTTTAA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11572MSTRG.11572Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11572.1.p1MSTRG.11572.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11572.1.p1.exon1MSTRG.11572.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11572.1.p1.exon2MSTRG.11572.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11572.1.p1.exon3MSTRG.11572.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000084_pilongenomesc0000084_pilon:797475..801797 +