MSTRG.11442.4.p1 (mRNA) -

Overview
NameMSTRG.11442.4.p1
Unique NameMSTRG.11442.4.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000083_pilon:90092..96555-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11442.4.p1 ID=MSTRG.11442.4.p1|Name=MSTRG.11442.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6464bp|location=Sequence derived from alignment at sc0000083_pilon:90092..96555- (Clytia hemisphaerica_ch_hm2_pilon)
GGGATATGATAAAGCGATTGTGAAATTACTGTTTTACTACTGGGTGTCCC
AGAAAAAAATACCCTTCTTTGAAGTGAATTTTCTCGAGTTCTATGAACTT
TTAAAGAATCAATCCTTTTGCAGTGGAAAGAGGAAAGATAAAATTAAACT
TTGAGGGGTCATTTGTCAAATTTAGTCGACTAGATAAAAAGCTGTGTGGC
CTTAATGCTAAAACATTACTTTTGCATGGGTCTTATAATTACTGTAGATG
AAAAAGGGTTGAGCTTTATTCTTCAATTTTTCACCCCTCAGAGCCACTAT
TCTCAACCTATTATCTTGTTACCCCTTGCTACCCTGTATTACTCCCCTGT
TACCATGTGTTACCTTTTTTAGTAACAAAACACACTGTTTCAGGGTGCTG
GTGCTTAGAAACACTGTACCTCACACTAAAGAAAGTAACCAAAGTCAATT
GACATTAACCTATTAATCAATTTTTTTGGCTCTCATTTTAACCTGATTAA
AGTATTCAGTTTAGAATTAAGATGTCAATTAAAGCTGAAAAAATTAAATG
CAATGCAGAAGAAGACTTGTTTGATAAACTTAATGTAATTTATGTAATTT
TAATTTTTGTTAAAACAATTCTGATGATATGTAGAAAGTTGATATTTTCA
AGTTTCAATGAAAATTTATCTTTCTTAGGTTTTTAAGTCTCACACTTTAG
TAATTTTTCATAAAAGACTAATTTTGAACTTGAATAGGTGATAAAATTCT
AATTATATTAAAATGATTTTATCAAAGGTGAAGATTGAAGAGATCCAGCA
AGACTATGTTTTGGTTAGTAAGCAGAAAATGGCTCAGCTAACTCTTGAAA
TCAATCAGCTCAAAGATGGTCTTGCCAAGGTTATATATTTAAAAAAAACT
CAATTTAATTATTTCTTGTTAAATTCAAAATTAAAATTTGTCAATATAAA
ACCTCTACCTTTTTGGTATTATATTTCATGTGTTACAAAATTTCGTGGTT
ACAGTATGTGGCCCCCAAAATGACTATCCAAATTGAAATCTTTCTAGTGA
ATTCAGAAAATAGAGATTAAGTTAAAAAATTTTCTTGTGAATTAAGCTTC
AACATGTCTAGTTTCTTTCCCAAAAGATAACTTTCTTAGAATAAAGGTTT
TTGTATGATTTTTTTTCAGTCAAAGTTGAGTCCCATTTTTCTAATGGCCC
CCAAAACGGAGGTTTAGTTTTTTCGAAATATCTTAATCAAAAAGCATAGC
ACCGATATCAAATTACTATCAATAGGTATCAAGGCAATGCTTTACGACTT
AAAAAAGTCAAAATTTACTTTTCTCTTTATCTTCGTCTTCATACAAATGG
TTGTCAAAATGGATGTTAGTGACCCCCAAAACGTTGATTCAATTAAATTG
AAATTGTTAAAAACCCATCACTTAATCATGTCTCGAATTAAAGACATGAT
AAAATAATTTGTTTGTTGATAATTTTGCAAAAAAAATTCATCCCAAAACA
ATAAATGTTTCAGGCCAGGCTGAGTGCAAAATTCTGTGCAAAATACTAGC
AATGCCTCCGATGTTAATTTTATCGTGCTATATTTAGAATTTTCTGAAAA
ACTTTGACCTACTGAGTTGGTATGTTGGTATATGTTTATACTTTCCAGAG
TTACTCAGCTTTTAGGGGTTAATTTCCAATCTGACTTTTGACGGTTTTAG
TCCAAAAAAAGGAATTTTCAAAACTAATTTTTGAAAAACAAGGAAGAAGA
AAATTAGCCATTTAAAAATTTTATTATCAAAAATACAAAATACCTATTTG
TTATACTTAGTTATTATTTTTGTCACTAGTTTTGTTACTATTTTTGGTAT
CTTTATACCCCAATACGTTGCGTTTCAAGCGAAATCAGTCATTTTCTTGC
TTTATTCCCACTTTTTGAAAATGCCTTATTTAGTGAATCGTGAAATTTAA
TACATGCAAAAATTTCCAAAAACTGGCAATCGCAAAATTTAGTACACGCA
AAAAACATTTCCTCTAAAAAATGAGATATAACATACACGCGAAATATAAT
ACCAATAAGGTAATTGGAAAAAAATCTTCCAAATCTTCAGGAGAACTTGA
ATTCAATATCTTTTCGCTTTGATATTAATCTTAATTTTTCCTAATTACAA
AATTTCCATGTAGGTTGTAAACAAAGATGTGATTCAATCAACATTCAAAC
AACACACAAAGCAGCTTGGTATGTTTTAATTTATTGAAGATTTTTTTAAA
TAAAACACTAGTAGTCTCAGACAGCGCCCAGACAGCTACATCATTAGAAT
GTGATGTCTTCTTTCCTAATGGTTAATACTTTTTGAATTTTCCTACTTTG
AATGGTAGCTATTTCTTATATACTAGCAATTGGCACTCTTTTAAACTAGT
TCCCAATTTTATTTTGATTATATCAGAATGCAGATCAATTGCAGCAGAGA
AACAGAAACTCCAAAGAGAACTAGAGCTTTTCAATTCTAGACATGAATCA
ACTTTAGTTGAGTTAGAAAAAGAGAGACAGGTTTGTAATTTTCCTTGTAT
TTTCAAGTAAATTTGAATTAAAGCTCATTTAAATTACGCAGTGAATAAAA
AATACTACTCAGCTTTTTTATGGAAACTTATACTGAGCTGATTTGAAAGT
TTTCTTTTATTCTTAGACTTGTGTTTTTAAACGAAAACTTTCTTTTGTTT
TTAGAAAGCAGCACAACTTCTAGTAAGTTAATAAAGACAGTGATTATTTT
ATTTTATTTTATATGAGTGTGTATGACATGTTTTGAGTGTAGATATGGAT
TTTAACTGTTTTTAATGTTTTTATATATTATTTCTTTTAGACCTGAAGAT
GGACATTATGTCCGAAATATATAGTCAAAAATAAAATAATATTAATTGTT
GGCTCAACTTTACTTGATATTTTATTTTAGAAATATGATTTTTCTTCTGT
CATCTGAACCTAGTGGACAATAGGTTGTAAAATCATTTTTTAGGGCCTGG
ATTAAATATCAAGATTTTGTTAAAAGCTTTATTTTATACATAATTGTTCC
CGTTTCATATCAGATACATATTTCATATAAGGACGTGTTTCCCTATTGTT
ATATTGTGCTGAATAAACAAAAAAATTGGTCTTTCTGACCAATCTTGCTC
CACATCCGTGTCAATCCAATGTGAAAAACTTGTAAATTAAAATTGATGAG
TAAGCAAATGATATCACTTTTATTTAAAAACAAAACCTTGAAGTAAAAAG
ATTATTTTCCAGAATGTTACAGTCATTGCAGTATATTGTTTTATTTTCAT
TTAAGAAGATCGAAGAGATGATTGAGACAGCTTCTTTGATTTCATTCTTA
TGAGTAAAAGTGAGGTCGAATATATAATTTTGAGGTCTAAAACAAACTAA
TTATTCCTATAGTCTTATTTTTATTAGCAACAAAGCAAGGACATGTCTGA
TGCAATGGTTGAACAATCATTATTTTGGACAAAGTTTGGCAGTAACGTTT
GTACACTTCTCTGGAAAGCCTCTAATAATGATGAATCTGTCAAAGCTATG
CTGAATGGTGTAAGACAGTTTTTTGTAAAGTGTCTTGCCCCTCTCCTAGT
CTAAAGAGTTTTTTTTCTTTATCAATATCCCATGGCTTATTTTTTTCGAA
TCATTTTTCAATAAAGTTATCCTTATTCAAGAATTTAATCAACCAATTGA
AAAACAATTCTCAGATAAAAAAGGTTTATTTTTTTTAATATTATTGTGGT
TATCAAAATCAAAGTTTCATTTGTCTATTTCTATCCAACCATTGTAAGAA
GTGTGACAACTAAAATCTTAGCGTTTTGATTTCTCTTATTCTTTAGGATT
CAGGATTGAAATTTCTAGAGGTTGCTTCTTATGCTTACGAAAGCTATTTT
ACAGCTCTTCGTCTTCACAAGTTTGCCAAAGCCAAAGAACTTTCCGCTGA
ACATGATTTCATTTTCATGTTGACTGGTTTTCTAACAAACATGACTGCAT
CCTCATTTGGTAGAGAGTTTTTGATGAAAGCGACAGATAAAGATTCTTTG
TTGGATACTGCTTCCCAATTATTGGTAGATTTATCATTGAAGGACCTTGA
ATGGGCTAAACTACGGAATTTACTTTTGAAAATCTTCTACAATTTAAGGT
CAGAAATCATTGCATTGGCTATTTTTCTAGATTGTAAGTACAGTGCTGTC
AAAGCATGTAAAAAGAAAAAAAATTTAAGATTTGTATTTAAAGAATAAAC
GAACAATATAATGTATATGTTAATTGCACTTAAAGTTTGATATTTATTAA
TGTCCATAGGCTTTAGCTGTGGTTTATAAAGTTGACTTATTATTACACTT
GTTTTAAAGCTTGTTGTTATATCATCATCATTTTAATTAATTTTTAGCTT
AAACGAGAGAGGTTTGTTATTTGTATCTGAACAGCAGAATCTACTGAAAG
CTCTTTCCCAATCACTTTCAGGTATTGTTTTGTTTTCTAAATTCAAAAAC
ATGTAACTGTTGCTTTGCATCTTTTGCAGTAAAATTACAAGAATTGCTGG
GAAAAGGTTCTTAAACCTGAGGTCTTTGGTCTCACATCATATTTCATTAC
ATATGCTGATAAAAGATAAAAGAGAAACAGGGATCAGTAGCTTTACTTCT
TTTATTCTTTTATGTTTAGATGACCAATGTATGGAAAATAAACTACAATC
TATCAGGTATGATTCCAATTGCTCTTTTGCGGGAGAATTCCGTACCCTAA
GTGATAGCATCAAAATAAATTCCCTTTCAAAAGCCAAACAAGCATATGGG
GGTACTGGTTGTTTTTACTTCATTTTAATGCAGTCCTGCGCAGTGATCTC
TGACTTAAAATATAGCCTATTCCAACTTTATGTTAAAGACTAGAAAGGCT
GGTGTTAAATCTGATAAACAACATAAATGAATATATAAATATTTCGTCTT
CTTAGAATATTACACTCGATACTTTTGGAACCTGGAATGACAAACGCTAT
CCAACAAGTATTACACTTGGTGAGATTTTATTTTTTGACGTACATGGGGA
GGTCATATAAATTAACCTTCGTTCCTTCGTTACTAACTTTTGTCGGGATT
GGCTCATAGTATTTATTAGATTTTTGGCACAAAGATGCAAAATGGTAATG
CTCAAAATGTGACAAAAGCCGATTTTTGAAAGAAAAATTTCCTGTCGCCA
GATCTGGGAATTTCCCGGAAAAAGCGGTTTTCTGTATTTTCTTGAGATTC
TACTATTGGTTTTTCCTGGTTTTTCTAAATAGATGCGTTTTAGTTTTGCC
ATCAATGTTTCAAAAACAGTTTTCGATTTCCCTGTACGATTCTGGAAATA
CGCCAGAAATCAATGTTTTTTCCGTAATTCTGTGACAAAGTTTGTTAATC
ATTGACCGACATTTAAGAAAAGATTTCTCTAAGGGTTTGTCTTTTTGAAA
ACCTAGTACTCCGCCACCCTGGCCGACTGGGCAAGACTACATTCACGTGC
GGTGTAATTGATCTAATAAATTTATTTATGGTCATTGTTTTTTCCTGATT
AGATACCAAGAGAAAAACTATCAAGTCATCTACAATACAGTAGTGGAGAG
GTAACGATTATCAGCGGTCTTTTGTTCCCTTAAGTCGTCAACGATTGCAA
CGATTTTGCTTTCTATGAATCTGTCACACAGCTGAATTTTGTTTTATACA
CCCACTTCTCCCGGTAGGATTTCAGACAGTGGGGATAAAAATAACGGACT
GAAACTGGACGGGGATTGATATTCTAATGTTTTAATGGCTTGGGATTCCA
ATTCTTTTGTTTTCAAGTTAGAAAATTCAGTGGGGATGGCAAAAAAAATA
TCATAATTTGCAGTGAGGATTGGTTTATTTGATCATTTTCAGTGGGAACA
AAAATTGAAGGATAATTTTCCACAAGGGATGATATTTTGGCCAATTTTTC
CAGTGGGAAGGGGTCCCAATGGATCTGTTTTCACGTACTGTATAGCAATT
TCAATGTTTCAGTAGGATGAATGTAGGAAGAATTATCATAAATGTCCTCT
CTTATAATAAAATGAATAAATTTCTGTGCTATATTGATGTTTTCAGGTCA
AAGAAGCACTTCAAGAATTAGAAATGGAGTATCGTGTCCATGGAAGAGAA
TCGTAAACTTGATGTCACATGATGTTTCAAGGATATGTATGGTTGATTGA
AATTGTAACCAAAACCTAATTTCTCTTAGGTCATTTGAAGGTCTAAATGA
ATCATTGGTAGCCAAGACCAATATAGCCTCTTTTAGTAGGGGGAATTTTG
TTCGATTTTTTGGAATCGCTCGAATGTTTTGTTAGAAGCACTTGTTATAT
ATTTTTGGAAAGCTAAGGGGTAGGGGAATCGAAATTACAATGTTTCCAAT
TTTTTTTCGGACACTTTGGTGTGATTTTCGGTCAAATATGACGGTCTCAG
GCAAAAATCATAGG

Coding sequence (CDS) from alignment at sc0000083_pilon:90092..96555-

>MSTRG.11442.4.p1 ID=MSTRG.11442.4.p1|Name=MSTRG.11442.4.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1269bp|location=Sequence derived from alignment at sc0000083_pilon:90092..96555- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGATTCAGGATTGAAATTTCTAGAGGTTGCTTCTTATGCTTACGAAA
GCTATTTTACAGCTCTTCGTCTTCACAAGTTTGCCAAAGCCAAAGAACTT
TCCGCTGAACATGATTTCATTTTCATGTTGACTGGTTTTCTAACAAACAT
GACTGCATCCTCATTTGGTAGAGAGTTTTTGATGAAAGCGACAGATAAAG
ATTCTTTGTTGGATACTGCTTCCCAATTATTGGTAGATTTATCATTGAAG
GACCTTGAATGGGCTAAACTACGGAATTTACTTTTGAAAATCTTCTACAA
TTTAAGATGTCTGATGCAATGGTTGAACAATCATTATTTTGGACAAAGTT
TGGCAGTAACGTTTGTACACTTCTCTGGAAAGCCTCTAATAATGATGAAT
CTGTCAAAGCTATGCTGAATGGTATGAGATTCAGGATTGAAATTTCTAGA
GGTTGCTTCTTATGCTTACGAAAGCTATTTTACAGCTCTTCGTCTTCACA
AGTTTGCCAAAGCCAAAGAACTTTCCGCTGAACATGATTTCATTTTCATG
TTGACTGGTTTTCTAACAAACATGACTGCATCCTCATTTGGTAGAGAGTT
TTTGATGAAAGCGACAGATAAAGATTCTTTGTTGGATACTGCTTCCCAAT
TATTGGTAGATTTATCATTGAAGGACCTTGAATGGGCTAAACTACGGAAT
TTACTTTTGAAAATCTTCTACAATTTAAGATGTCTGATGCAATGGTTGAA
CAATCATTATTTTGGACAAAGTTTGGCAGTAACGTTTGTACACTTCTCTG
GAAAGCCTCTAATAATGATGAATCTGTCAAAGCTATGCTGAATGGTATGA
GATTCAGGATTGAAATTTCTAGAGGTTGCTTCTTATGCTTACGAAAGCTA
TTTTACAGCTCTTCGTCTTCACAAGTTTGCCAAAGCCAAAGAACTTTCCG
CTGAACATGATTTCATTTTCATGTTGACTGGTTTTCTAACAAACATGACT
GCATCCTCATTTGGTAGAGAGTTTTTGATGAAAGCGACAGATAAAGATTC
TTTGTTGGATACTGCTTCCCAATTATTGGTAGATTTATCATTGAAGGACC
TTGAATGGGCTAAACTACGGAATTTACTTTTGAAAATCTTCTACAATTTA
AGATGTCTGATGCAATGGTTGAACAATCATTATTTTGGACAAAGTTTGGC
AGTAACGTTTGTACACTTCTCTGGAAAGCCTCTAATAATGATGAATCTGT
CAAAGCTATGCTGAATGGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11442MSTRG.11442Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11442.4.p1.exon9MSTRG.11442.4.p1.exon9Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon8MSTRG.11442.4.p1.exon8Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon7MSTRG.11442.4.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon6MSTRG.11442.4.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon5MSTRG.11442.4.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon4MSTRG.11442.4.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon3MSTRG.11442.4.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon2MSTRG.11442.4.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11442.4.p1.exon1MSTRG.11442.4.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11442.4.p1MSTRG.11442.4.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000083_pilongenomesc0000083_pilon:90092..96555 -