MSTRG.11694.3.p1 (mRNA) -

Overview
NameMSTRG.11694.3.p1
Unique NameMSTRG.11694.3.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000085_pilon:1074412..1076350+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11694.3.p1 ID=MSTRG.11694.3.p1|Name=MSTRG.11694.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1939bp|location=Sequence derived from alignment at sc0000085_pilon:1074412..1076350+ (Clytia hemisphaerica_ch_hm2_pilon)
GCACCGTTGAATGGTCATTGGGGTCGATGGGGAGACTGGGGACAATGTAG
TGTCACGTGTGAAGAAGGTGTGCAAACAAGATCACGTGCTTGTTCTGATC
CTGCTCCAAAGAACGGTGGCAAAGATTGTGTAGGTTCGAGCACTCAATCA
CAAAAATGCATAAAGAGAAGTTGTACTTCAGGTTTGTTTTTTCGTTCTGT
CATCTTTCAGAAACTTTTAGTAAAGACATTTTTAGAGTTGGTGGCATAAT
AaagtgtgtccgaaaaaaaagcgaaaaaagcCGTACATCTAGTTCCGtta
gataaaataaaagagtCCGAGCACCATGGTCAAACTTTACCGACAATATT
ACACTGAtacaactcaaaacaaaatcacagCCACTAACACTCAAAGATAA
AAAGCAAGTCACATAGCATAGAAAAACATATAGGTTCGTCAGATGGAACT
TTTGACCCTGTAATCCTACGAAATAAAGATCATTAGTcgaagatttgaaa
aataaaaaggtaaAATAGTATGGACTTACCAGAAATCTTCAATTTGTTCT
TTCAGGGCCAGCTGACTGTTTCTTCGATATTGACGAAGAGCCATTATGCA
AATGGACGCAAAGTACATCTGATAATCTCGATTGGACAAGAAAGGCCGGA
ACTACCCCTTCATCGAGTACCGGACCCAGTGGTGATCATACAACCGGAAC
AGGTACCTATCTCTCAACATCGTTCAACATTTCTCAGTTGCtgaaatatg
aaaatagtgacaATTAGTCAAGTATTAACAGTATTAAATTctattgaaaa
aagaaagatgaaaaaattaagatttttctaCTGGACCAAAAATGTTATCA
TACcttgctgaaattttgaacttcgtcgaatttgaattttcatgtttctt
agatcaaaagttacaacAGTTAAAAACAGGCAACCTTTTATATTATTCCC
ATTCTCaacggggcactgagacagagGTGTCATCTAGGAGAGAAGTATTT
CGTATATAACatatcaaaaactagaaaaGGAAAAACGTCATTCTAATAAG
CAAATTTCATGAATTACTTTTTCAGGTTACTACCTTTTCATGGAATCATC
GTCACCTGCACAGAACGGCTGGAAAGCTAGATTAGAGAGCCCTGTATTGA
GCAATGTAGAACGGTGCATGAAATTCGCATATCACATGTATGGCCACTCT
ACAGGTAACCTACTAGCCTGTAAACCAACGGCAGGCATATGTAGCTACAC
TTTTGAGGACCTCTATTTGGAACAACCCGTATTCTACCCGCAAGACTGCG
AGGACGCTAGCTAGCGATCTGCTGATTTACTGTCGTCTTCAGTTAGTTAA
AAGTTTAACAAATGAAAAACCAACCGTCTTTTTCGTAGAAAACAAAGAAT
ATATAAACTTTTAACATTCCAAATATCAACTAAGCGAATTTACGTAGGCA
ACATACTTACACCAGAAGAAGAAGTTATTATTCCcgagtgagaaaaaaaa
aatagaaattcttCATTATTCAACCTTTGGTAAACGTCGAATTATTGTTT
TCTTACGCATTGAATTTCTTTCAGGAACGTTATCAGTGCGAGTGAAGAAT
TTGAAGACCAATCAAGAAGAAGAGGTGTTTACGAAAAGTGGAGATCAATT
GAACGAATGGAAAGAAAAAGAACTTGATATTTCATCTGCTGACCAATACA
AAGTAAGAAGCAACAGACGTGCACTCAGATGATCCAGATAGCgtatttat
tttgaatgaaTCCCCAGAAAATATTCAACGTTTTAGGTACCAAATCCTGA
GGAATTTCTTTAATATAATGGTATTGGAAAACTTATTTTGATGTCTTTTA
GGTCATCATTGAAGCAACACGAGCATTTGGATTCCAAGGTGACATAGCAA
TCGACGACATTGTCATTTCAAATGGGAAATGTGGAAGTA

Coding sequence (CDS) from alignment at sc0000085_pilon:1074412..1076350+

>MSTRG.11694.3.p1 ID=MSTRG.11694.3.p1|Name=MSTRG.11694.3.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2172bp|location=Sequence derived from alignment at sc0000085_pilon:1074412..1076350+ (Clytia hemisphaerica_ch_hm2_pilon)
GCACCGTTGAATGGTCATTGGGGTCGATGGGGAGACTGGGGACAATGTAG
TGTCACGTGTGAAGAAGGTGTGCAAACAAGATCACGTGCTTGTTCTGATC
CTGCTCCAAAGAACGGTGGCAAAGATTGTGTAGGTTCGAGCACTCAATCA
CAAAAATGCATAAAGAGAAGTTGTACTTCAGGGCCAGCTGACTGTTTCTT
CGATATTGACGAAGAGCCATTATGCAAATGGACGCAAAGTACATCTGATA
ATCTCGATTGGACAAGAAAGGCCGGAACTACCCCTTCATCGAGTACCGGA
CCCAGTGGTGATCATACAACCGGAACAGGAACGTTATCAGTGCGAGTGAA
GAATTTGAAGACCAATCAAGAAGAAGAGGTGTTTACGAAAAGTGGAGATC
AATTGAACGAATGGAAAGAAAAAGAACTTGATATTTCATCTGCTGACCAA
TACAAAGTCATCATTGAAGCAACACGAGCATTTGGATTCCAAGGTGACAT
AGCAATCGACGACATTGTCATTTCAAATGGGAAATGTGGAAGTGCACCGT
TGAATGGTCATTGGGGTCGATGGGGAGACTGGGGACAATGTAGTGTCACG
TGTGAAGAAGGTGTGCAAACAAGATCACGTGCTTGTTCTGATCCTGCTCC
AAAGAACGGTGGCAAAGATTGTGTAGGTTCGAGCACTCAATCACAAAAAT
GCATAAAGAGAAGTTGTACTTCAGGGCCAGCTGACTGTTTCTTCGATATT
GACGAAGAGCCATTATGCAAATGGACGCAAAGTACATCTGATAATCTCGA
TTGGACAAGAAAGGCCGGAACTACCCCTTCATCGAGTACCGGACCCAGTG
GTGATCATACAACCGGAACAGGAACGTTATCAGTGCGAGTGAAGAATTTG
AAGACCAATCAAGAAGAAGAGGTGTTTACGAAAAGTGGAGATCAATTGAA
CGAATGGAAAGAAAAAGAACTTGATATTTCATCTGCTGACCAATACAAAG
TCATCATTGAAGCAACACGAGCATTTGGATTCCAAGGTGACATAGCAATC
GACGACATTGTCATTTCAAATGGGAAATGTGGAAGTGCACCGTTGAATGG
TCATTGGGGTCGATGGGGAGACTGGGGACAATGTAGTGTCACGTGTGAAG
AAGGTGTGCAAACAAGATCACGTGCTTGTTCTGATCCTGCTCCAAAGAAC
GGTGGCAAAGATTGTGTAGGTTCGAGCACTCAATCACAAAAATGCATAAA
GAGAAGTTGTACTTCAGGGCCAGCTGACTGTTTCTTCGATATTGACGAAG
AGCCATTATGCAAATGGACGCAAAGTACATCTGATAATCTCGATTGGACA
AGAAAGGCCGGAACTACCCCTTCATCGAGTACCGGACCCAGTGGTGATCA
TACAACCGGAACAGGAACGTTATCAGTGCGAGTGAAGAATTTGAAGACCA
ATCAAGAAGAAGAGGTGTTTACGAAAAGTGGAGATCAATTGAACGAATGG
AAAGAAAAAGAACTTGATATTTCATCTGCTGACCAATACAAAGTCATCAT
TGAAGCAACACGAGCATTTGGATTCCAAGGTGACATAGCAATCGACGACA
TTGTCATTTCAAATGGGAAATGTGGAAGTGCACCGTTGAATGGTCATTGG
GGTCGATGGGGAGACTGGGGACAATGTAGTGTCACGTGTGAAGAAGGTGT
GCAAACAAGATCACGTGCTTGTTCTGATCCTGCTCCAAAGAACGGTGGCA
AAGATTGTGTAGGTTCGAGCACTCAATCACAAAAATGCATAAAGAGAAGT
TGTACTTCAGGGCCAGCTGACTGTTTCTTCGATATTGACGAAGAGCCATT
ATGCAAATGGACGCAAAGTACATCTGATAATCTCGATTGGACAAGAAAGG
CCGGAACTACCCCTTCATCGAGTACCGGACCCAGTGGTGATCATACAACC
GGAACAGGAACGTTATCAGTGCGAGTGAAGAATTTGAAGACCAATCAAGA
AGAAGAGGTGTTTACGAAAAGTGGAGATCAATTGAACGAATGGAAAGAAA
AAGAACTTGATATTTCATCTGCTGACCAATACAAAGTCATCATTGAAGCA
ACACGAGCATTTGGATTCCAAGGTGACATAGCAATCGACGACATTGTCAT
TTCAAATGGGAAATGTGGAAGT
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11694MSTRG.11694Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11694.3.p1.exon1MSTRG.11694.3.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11694.3.p1.exon2MSTRG.11694.3.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11694.3.p1.exon3MSTRG.11694.3.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11694.3.p1.exon4MSTRG.11694.3.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11694.3.p1MSTRG.11694.3.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000085_pilongenomesc0000085_pilon:1074412..1076350 +