MSTRG.10088.1.p1 (mRNA) -

Overview
NameMSTRG.10088.1.p1
Unique NameMSTRG.10088.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000069_pilon:615300..622381+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.10088.1.p1 ID=MSTRG.10088.1.p1|Name=MSTRG.10088.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7082bp|location=Sequence derived from alignment at sc0000069_pilon:615300..622381+ (Clytia hemisphaerica_ch_hm2_pilon)
TGTAAACTTTAACGATTTGAACGAAGTTTAATAGTAAACTTTCAAAATGT
CTACTTACATCACTGTCACAAAGGCTATCCAAGAGATAGAATATTGGTTG
CGTCTTGCCACCTTACTTCATGAGCCAATGAAAGAATCTCTTCTTAATGT
CTTGCATAACAAGTACAATCAGACTGATTATGTTGGACTCCCCTCAAATC
CTGTTCTTCtaaacacagaacttaaaaaacatcaaaataaaatcaaccaa
ctaaaaggaaagaaacttttaaacaaagatcaaaTTGAACTTTTATTACC
TACTGGTAGTAATCAAACAGATAGTTCAAAGTTCGATATCACTTTGATCA
TACTTTTGATAATTGATTTCACTAATTTACCACCGCCTACAAATGGTTGG
AAAAAGGAACCATCACCAACTGACATGAGTTTGGGTGCATTCGTTCTCCG
TGCCCGCAGGTGGAGAAATGACCTCATTCATGGAGATGCGAGGGGTATTA
CACCACATGATTTCAACCTTCGTTGGACTGAAGGGGAAGTGATCATTAAA
GGTCTTTTACTGGTTAATTACAATACCAATATACTAAGAACCATTACTTT
AGATGTCCGAAATAGCACTGTCTTAAATGCTCTTtcgtttttctccaaaa
aaattCTCGGCCAACTTACTGCACATGACTTAGAACTTAAGGATCACGAG
AATAGGTTAAATACCCATGATACAACACTCGCCGACCATGACGCCATACT
TGCCGACCATAATACAACACTCGCTAAGCATGATACAGCACTCGCTGGCA
ATAATACGACACTCGCCGACCATGATATAACACTCGCCAAGCATGATGCA
GCACTCGCCAAGCATGATACAACACTCGCCGACCATGATACAACACTCGC
CAACCATGATACAACACTCACCGACCATGATACAGCACTCGCCAAGTATG
ATACAACACTCGCCAACCATGATACAACACTCGCCAACCATGATACAACA
CTCGCCGACCATGATACAGCACTCGCCGACAATGATACAAAACTCGCTGA
TCATGATAAAGCACTCGCTAAGTATGATACAGCACTCGCCGATTATAATA
CAACACTCGCCGATCATGATACAACGCTCGCCGACCATGATACAACACTC
GCCGACCATGATACAGCACTCGCCGACAATGATACAAAACTCGCTGATCA
TGATAAAGCACTCGCTAAGTATGATACAGCACTCGCCGATTATAATACAA
CACTCGCCGATCATGATACAACGCTCGCCGACCATGATACAACACTCGCC
GACCATGATACAGCACTCGCTAACAATGTAGCAACACTCGCCAAGCATGG
TGATCAATTAAATAAACAACAGTTTGATTTAGCTGGCCTCGATGCAAAGT
TTGAACAACAAGCGAATAATTTAGCTGATAATAAAGAGTCTTTGCAAGAC
TTGACACAGAAAATAAACGAGAACgaaataaaatttgtacaaacAATTGA
CCGCTTGGAAaaggaatttaattttatccAAGCCATTCCTCAAGAGAAAA
ATGACCAATCGCTAGGTATGTTCAAGTTGAATTTTATCAATATGATAGAT
ACAGTATGGAATATAACTTAACAGCAGCTCTTAGACTCGGCCCGcaaata
ttgttaaaattacTCAACCCTTAGACAATCATGGTGTACTTATAATAATA
GTGTGATGGCTTGACTAGCGACTGGCACTAAAATTAGTCCAAAAGAAGGG
TTCATTTCACAGGATCCTCAGTAAGCAGGTTAGCTTTGGGGTCGAACTCA
TAACCTTACGCACCGTAGCTGAATGATTTACCTTCGTGCTAGGACTGCAG
GTTAGCTATCTCAGCAACACGAGTTTCTCAACGGTCTCAAAAAGCTTTTA
TGAATGACTTATTTTAGAGCCACAGTTTAAACGTTTTATATAGAGAAAAC
GGTAAGAAAATGCCAACTCTAAAAACAGTATCCTGTAGAGTGGATCTGAT
CTTTCCTTTGGTTTATTACATTTGTTGAAAGATCACATACCCGATTCTTA
TATGTTATTTATCTTAGAACCAAGAGGTCTTTGTTTGGCTGAGGTTCTCG
AACACATCTTAACAAACATTGGTCCACAGGAAGACGAATTACTTAAACGA
CTAGGATTAGAAAATGTGGAAGAAGATAATGTTTATGAGCTCCTTAAATT
TGTACCTTGGTCTCGTATCAAGTTTCATCTCGAGCGACTCGAAAGATCAG
ACATCGTAGATTTTATCACTGCAAATACACTTATTACCGAAGGTACAGGT
TCTTCCACATTTAGATTTTCGCCTATACCTTCCGAATTCATGAGCAAATT
AAAACTAGTACCTAGCTAGATTTCTCAAATGATTTAGTTATTTACAGTTT
ACACTTTTTGATTCGCAAAACGTTCCTAAACATTCCTAAACAACGCTTTG
CTGTtcaatacgctcccttattcgatgaaataaTTAGAGAGTATCAATGA
ATCGGGttctagggcaaaatgggttatgGGAATGCGCCGCTggttagggt
accttttttatcCTCCACCAGTCCCAGTTAGGGTcgcaaaaatactaaaa
tagaaaaatcagtccctcgtagggtgccttttttggaaaatttggggaaa
aagtagaaaatttcatctcatcatcatcatcatcaaaattttggaatttt
agtcccattcagggtcacttttttcgcaaatttcgagtcccccgtcggtc
ggcaagggtagtacccccccccccgccaggTAGTGCTGACGCCTTAGACC
ACTAAATCGTTTCTCCTACCTTGTCTTTTCTGTCTTTGTAGACATAAAAC
TTGCATCTACCAAACTCCGATGTAGATACTCTGAAGAAGTCATCATATCC
CTTGCTAACCAATCTTTGAGTGGAAGTCAAGAGACATCGTATTACAACAG
TAATGATATGTATACAGACTTAGCTGTCCTTAAAGCAAACGTTGTCGACA
GTGAAATTGACAACTCTGATCGAAAAGCGCTCATGGAACAAAGATATTTC
GACAAAGAGAGTATTGAACTCGATGATTTGTTTCAGCAAAAGAATGACAC
TGTATTCGTACGTGGCGTTGGAGGTATTTTTATTCTTCTAGCTTTTTGTT
CAAGAGTTACAGTCTTAGGAGGCTGTCGGTTGAATACCCGGCGGGAGGTg
gcactcatatggtctgaCCCACGTGCAGCCCTAGGTTTTTCGAGAGCCtc
taaatgcactgtaagggtgtacttttgaaaGAGCGCACTATAAGGGTTTT
CTTTTAGCcggatacactgtaagggtgtgtttggggactactgaattgca
agtctgacagtaaaaatctgacaAAGTTTTAACCCGcgcccattttgatt
tgttttacacattgtgtcgacatctctGGCTCACTTTTAGGTGCCTTTAg
caaataagatatgaaatcaaactataCTGTCAAACATGCTGTCGTTTAAA
ATCGAGCCCCCTCCCCGGGgtgaatggtgtttttttttcggatgattttt
ttcagataattttcaggCACGGTCCAATGTTTGTGGTAAACTCTCATTCT
GTGGGGACCACTGTATAGAAGTACCATCACTTTAAATTTcggaaaattgt
ttgtttgatttCAACGAGACTTCAcacccaaaataaaaaaatgttgtcAC
TCTCGACTTAATTCAGGTGGGGTCAAAAATAAGACGGCGCCGGTCGTGGC
ATTTAGACCTACCGGGAATTATCTTATAAGATGCCAATGGCTCTTGATAG
GTTAAcataatttgtatttttttgtcttAGGTATGGGCAAAACGACGATG
CTCGAAATGTATAcgttaaaatgggcaaaaaaggAACTTGAACTTGACCT
TCCTCTAGAAttcattttcttgttttcatgTCGAGAACTGAACCGATTGA
CTGGGCGTATTACATCAATTGAAGATTTGTTCACAGAAAAGTATCCCGAA
ATATTCTCCATAGTTTCTTTGGAAAACCTTGCACAAATAGCTGATCGAGT
CTTAATCATCATCGACGGTCTTGACGAAGTTCATGGTGTTTATGAAACAG
AGGTATCCAAAAACAGTCCATCTTTGACATCCATTCAAATATTATCAGAA
TTAATCAACACCCAAGGACCTCTTCTAAAAGGACATAAATGCATTGCTTG
TGGTCGACCAAAGCTTGTGATTTCATCAAGAGaaaaatacatcaaatggA
AAGGCACTCAACGAAAGTGGCAACTAACATTAAAACTGTTGAAGTTTGTG
GTTTCAGTAAAGCTAATGTTgagaaatatattgaaaaattcTTTGCAGGT
AACACTGAAAAGGCGAATCGTGTTCGAGAAGCGATTAAAACCTCAGAGAA
TTTACGTGTAATGGCATCTGTACCTGTATTCATTTGGGTTATCGTGAATG
TTTATAGCGAAGACCTGATCACGAAGCCACTGAACACGCATACAGAATTA
TACATGTACGCTTGTCTTGTGTTCCTAAGAAACCACATGCATGGTGTTGG
GACGAAAGATTACaaaacattgattgaacttCTGGAAGATAACACCATTT
TTGAGGTTGTTTACTCGCTGATGACTCTTTCAGTGAAAACTTACATGAAC
AACAAAGTTTTATTCACGGAACAGGATATCAAAAGTTTGAACTGTCCTAT
TCATTTGGAGCAGACTGGCCTCATTGTTAAGTATAGTCGTGGTGAAATAC
AAGAGCCGATATACCAGTTTAAGCACATTGTGCTTCAAGAGTTCCTAACG
GGACTTTTCTTTTGTGTGACTAAAGGGATTTCGCCCTACTTAACTAACCG
TGAGTTGTCAAGTTGTTCACCTATTATCTTTGGTATTCTTAGGTTGCTCG
AAGAAAACGACAATAAGCTATTTGTTGAGTTCTTTACTCGCTTAACAGGG
GTTCATCGAATGAAATCAAGCCTTTTTAAGAGGATCCAAGGAACATTTCA
AGCCcgaacatttcaaaaatttatctcTCGCAATACAATCGAATTTCCGA
AATGCATGATCTATTTTGATTCATTAGTCATAGACACAACCATACCGGAA
TGTCAAGAATTCTTGACAGTTTTCTACGAagctaaattcaaaattgaatg
tCCGTTTGCCACCGTTGAAATTTTTGGTTGTCCTATCGGTATTGAAAAAa
ggaatatagtttttcttatttggtatCTGAACCTTGAACTGAAACTGCCA
AATTGCATGTGGAGCTGCTCTGGATTATCACTTACTACAAAACCCGAGTG
TAATCACTTCATATCACTTTATTATGGAAATGGAGACAGAATCAAAGTAC
AAAACCATTTTCGAAAGCTGACAATAGATGAACCAATAAGTAATTTCAAC
AAAGAGGAAATCTTGTATctgattgaaaaattgaatctaAAATCTTTAGA
GATCCCGAGGTATATGTTTACAAGTTCTAGAGAGCGAACTGAACTAACTA
TAGATGCTAGGAATCTACAATGTTATCAATTCATTGAATTTGTTTGCGAA
AATAAACTGAATGTTGAATGCGATGGGTTTAAAATGGTTGAACTGCGAGG
AAAGTTTAATGAAAAGAGCAGGAGAAATGCTTTCTTCCTCATGGATCAAC
TTGAGCTTTCGTTGAAAATTCCAGAATCCATGATTTTGAATGATACGTTA
ACAATGGATGATCGTGTGAATCACATCACATTTCTGGATGCTTTTCAACA
CGGAAGAAAAATAAGCACTCACGGTTTGCAGGGAGTCATTAAAGCACAGA
TCATGCCGtcttttgtttcaaaacatCCTTTGGAGCCGTATGCAGTACTG
CTTCATCATTTGCAGATATTGGAAATCAAAGTTCCGCCTAGTATGATATA
TAATCGGGACTCTGTAATCATTGATGCGGATTCTAAAAAGTGTATGGCTT
GCTTAAAGCTTTTTACATGTCTCGCTAAACTGACGGAGAAGATTCGCACT
ATAAAAGAGAGTTTTCCAGAATTAAAGTACGCCAATGTAAGGTTCGATAA
AATTGGCGATTACGACAGCGTAGCTTGTTTCATTTCGAAATGCGGACTTT
TGATCAGGTTGCCACCAACAATGACTATAAGCAGTTGTGTTTTCTTCAGC
GATGGCGAGAGGTATAATTTTGATAACTTCTATAATCTTTTGAAATATGA
TGGTATTCAATGTGCTTTGGGCGGGGTGACCCATTTTTCCGTATTTGATA
CAGAATTTGAAGAATCGTGGcttcaaaaactaaaatttatcgTATCAAAA
TTAAGGCTGGATTTGGAATTACCACATAACTTTCTAAAAGGAAAGGATGT
TTGCATCAAATCAGACAGAGAtcaaataagatttttcaaaatcgcaAATA
TTCTACCCTCCACAATCGAACGACCATTCAATCCAAAATATGCAAGTATC
TATTTACTACCACCTGATACCAGAGAAGTTTCTACATTTATCAAATATCA
TAATTTAACCGTTAAAATTCCAGACCAACTGCTGATGGCAGACGGTATAT
TAAACCTCGATTTTAACTTACCTCTAACAACCCCTTTCCTGAAGATGATT
TATGAAGAAAATCTAAccttacaaaatgaaaatttgaatcacGTAAAAAT
AATTGGTGAAACCTCTATAGATGTTTTAAATGCTGTTGTCAGTCTTATCA
CAAActtaaaattgaatattttggcGCCCGAAAAGCAATTCAATGATTAT
GGATTATTCACAATTGATATTACTGTACCAGAAAGTTTTAACTTCATTTA
TGTTGTACCACGTATTCAGCAAAATGTTGACCATTTGCATTTCTatgtaa
aacatttttgttcTGAAGATGAAATTGTTGAAGAATTTTTGCAACATATC
TGTTACAGTTGTTATTatgaataattttatttttaagatgaTGCTCTTAT
ATGTGttacaatcggcgccgaaatatattggcacttttgggtattttaac
gtttttcagaatttaaagatcgggcgagaattgcactttcagtacttcca
ctttgtttcattggatttttttacttgagagg

Coding sequence (CDS) from alignment at sc0000069_pilon:615300..622381+

>MSTRG.10088.1.p1 ID=MSTRG.10088.1.p1|Name=MSTRG.10088.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000069_pilon:615300..622381+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCATTGCTTGTGGTCGACCAAAGCTTGTGATTTCATCAAGAGaaaaat
acatcaaatggAAAGGCACTCAACGAAAGTGGCAACTAACATTAAAACTG
TTGAAGTTTGTGGTTTCAGTAAAGCTAATGTTgagaaatatattgaaaaa
ttcTTTGCAGGTAACACTGAAAAGGCGAATCGTGTTCGAGAAGCGATTAA
AACCTCAGAGAATTTACGTGTAATGGCATCTGTACCTGTATTCATTTGGG
TTATCGTGAATGTTTATAGCGAAGACCTGATCACGAAGCCACTGAACACG
CATACAGAATTATACATGTACGCTTGTCTTGTGTTCCTAAGAAACCACAT
GCATGGTGTTGGGACGAAAGATTACaaaacattgattgaacttCTGGAAG
ATAACACCATTTTTGAGGTTGTTTACTCGCTGATGACTCTTTCAGTGAAA
ACTTACATGAACAACAAAGTTTTATTCACGGAACAGGATATCAAAAGTTT
GAACTGTCCTATTCATTTGGAGCAGACTGGCCTCATTGTTAAGTATAGTC
GTGGTGAAATACAAGAGCCGATATACCAGTTTAAGCACATTGTGCTTCAA
GAGTTCCTAACGGGACTTTTCTTTTGTGTGACTAAAGGGATTTCGCCCTA
CTTAACTAACCGTGAGTTGTCAAGTTGTTCACCTATTATCTTTGGTATTC
TTAGGTTGCTCGAAGAAAACGACAATAAGCTATTTGTTGAGTTCTTTACT
CGCTTAACAGGGGTTCATCGAATGAAATCAAGCCTTTTTAAGAGGATCCA
AGGAACATTTCAAGCCcgaacatttcaaaaatttatctcTCGCAATACAA
TCGAATTTCCGAAATGCATGATCTATTTTGATTCATTAGTCATAGACACA
ACCATACCGGAATGTCAAGAATTCTTGACAGTTTTCTACGAagctaaatt
caaaattgaatgtCCGTTTGCCACCGTTGAAATTTTTGGTTGTCCTATCG
GTATTGAAAAAaggaatatagtttttcttatttggtatCTGAACCTTGAA
CTGAAACTGCCAAATTGCATGTGGAGCTGCTCTGGATTATCACTTACTAC
AAAACCCGAGTGTAATCACTTCATATCACTTTATTATGGAAATGGAGACA
GAATCAAAGTACAAAACCATTTTCGAAAGCTGACAATAGATGAACCAATA
AGTAATTTCAACAAAGAGGAAATCTTGTATctgattgaaaaattgaatct
aAAATCTTTAGAGATCCCGAGGTATATGTTTACAAGTTCTAGAGAGCGAA
CTGAACTAACTATAGATGCTAGGAATCTACAATGTTATCAATTCATTGAA
TTTGTTTGCGAAAATAAACTGAATGTTGAATGCGATGGGTTTAAAATGGT
TGAACTGCGAGGAAAGTTTAATGAAAAGAGCAGGAGAAATGCTTTCTTCC
TCATGGATCAACTTGAGCTTTCGTTGAAAATTCCAGAATCCATGATTTTG
AATGATACGTTAACAATGGATGATCGTGTGAATCACATCACATTTCTGGA
TGCTTTTCAACACGGAAGAAAAATAAGCACTCACGGTTTGCAGGGAGTCA
TTAAAGCACAGATCATGCCGtcttttgtttcaaaacatCCTTTGGAGCCG
TATGCAGTACTGCTTCATCATTTGCAGATATTGGAAATCAAAGTTCCGCC
TAGTATGATATATAATCGGGACTCTGTAATCATTGATGCGGATTCTAAAA
AGTGTATGGCTTGCTTAAAGCTTTTTACATGTCTCGCTAAACTGACGGAG
AAGATTCGCACTATAAAAGAGAGTTTTCCAGAATTAAAGTACGCCAATGT
AAGGTTCGATAAAATTGGCGATTACGACAGCGTAGCTTGTTTCATTTCGA
AATGCGGACTTTTGATCAGGTTGCCACCAACAATGACTATAAGCAGTTGT
GTTTTCTTCAGCGATGGCGAGAGGTATAATTTTGATAACTTCTATAATCT
TTTGAAATATGATGGTATTCAATGTGCTTTGGGCGGGGTGACCCATTTTT
CCGTATTTGATACAGAATTTGAAGAATCGTGGcttcaaaaactaaaattt
atcgTATCAAAATTAAGGCTGGATTTGGAATTACCACATAACTTTCTAAA
AGGAAAGGATGTTTGCATCAAATCAGACAGAGAtcaaataagatttttca
aaatcgcaAATATTCTACCCTCCACAATCGAACGACCATTCAATCCAAAA
TATGCAAGTATCTATTTACTACCACCTGATACCAGAGAAGTTTCTACATT
TATCAAATATCATAATTTAACCGTTAAAATTCCAGACCAACTGCTGATGG
CAGACGGTATATTAAACCTCGATTTTAACTTACCTCTAACAACCCCTTTC
CTGAAGATGATTTATGAAGAAAATCTAAccttacaaaatgaaaatttgaa
tcacGTAAAAATAATTGGTGAAACCTCTATAGATGTTTTAAATGCTGTTG
TCAGTCTTATCACAAActtaaaattgaatattttggcGCCCGAAAAGCAA
TTCAATGATTATGGATTATTCACAATTGATATTACTGTACCAGAAAGTTT
TAACTTCATTTATGTTGTACCACGTATTCAGCAAAATGTTGACCATTTGC
ATTTCTatgtaaaacatttttgttcTGAAGATGAAATTGTTGAAGAATTT
TTGCAACATATCTGTTACAGTTGTTATTatgaataa
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.10088MSTRG.10088Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10088.1.p1MSTRG.10088.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.10088.1.p1.exon1MSTRG.10088.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10088.1.p1.exon2MSTRG.10088.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10088.1.p1.exon3MSTRG.10088.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.10088.1.p1.exon4MSTRG.10088.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000069_pilongenomesc0000069_pilon:615300..622381 +