MSTRG.11063.1.p1 (mRNA) -

Overview
NameMSTRG.11063.1.p1
Unique NameMSTRG.11063.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000079_pilon:314881..317543+

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11063.1.p1 ID=MSTRG.11063.1.p1|Name=MSTRG.11063.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2663bp|location=Sequence derived from alignment at sc0000079_pilon:314881..317543+ (Clytia hemisphaerica_ch_hm2_pilon)
aaccaatcagattgctcgtTAAATATTAACCAATCACAGTGGTTGATTTA
GTACACAAAACACGTCATTTATACCATACAATACAGATGACGTAAGATGA
AAGATATAAATAAAAGAACAGGAGAGGGGAATAGATAACAACATTCACaa
cttgaatttctcaagacgAACACATCGTAGAGAACAAAATTCAAGAGAGG
AAAGGcgaaagttttttaaagtgGTGACATACACTAAACTTTAAAATCAC
TAGTTATATCATAGTTTGTCTTTCGTTGATTCAGCAATAAACATCATTAA
TAATGGCTTCAGAACAAGTACCAGAGATTCAAGTGGAATTCCAAAAAGTT
GAATTGGAACGACATGAAGATGGCTTCACTACAAGCTCTTCTGATGAAGA
AAGAAGATCACCGACGGCCATGCGGACAATCAAACTGGTCCCGCGCGCAC
AATTCGAACGCTTAGATTCAGGTTCGTCCATTGGTGAAGAGGAGGATCCA
CAAGAGCTGACAGAAGAACTCCGTGAGAAAATCATCATCCAAGCTGAATA
TTATTTCTCTGATGAAAACCTGAAGAAAGATGGATTCCTTTTGAAGCACG
TCAAACGAAACAAAGAAGGCTTCGTCAACCTGAAGCTTCTTGCTTCCTTC
AAAAAGATGAGATCGTTGAGCCGTGATTATCGTGTTATCGGTGAAGCATT
GAAAGACTCCAAAGAGCTTGTTATCAACGAGACAGGTTTGAAATTGAAAC
GAGTGACACCGCTACCAAAAGAACTTTTAGATCAAGCTCGTGTCAAACAT
ATTGTCCTCACCAAAATCCCAAACGAGAATCCTTCAATGAATTACATCAA
TGAAGCCTTTGAAGGTCACAAAGATGATGTCGTTTCTGTCAGAATTATCA
AACCTGGAAAGAAATTCCCTAACGATTTACAATCCCATTTCTCAAGACAT
CCAGAGCTTCGTGAAGAAACAGTCGCTGTTGTCGAATTCGAAAATCCAGA
CATTGCCAACGAAGCAATCAAAACCAAATTCTCCAACAAATACCAAGGAC
TTCAAGCTAAGTTATTGGAATTGGGACCCAAACAAGCCAAAAAGATCAAC
AGCGCCAATAACAGTGACGCCGGAGATTCAGACTCTGCCGTCGAGCGACG
TGGCTCAACCAAAGGGAAACGAAACAGTCGCTTATTGGAGGTATCCGGAC
AAGAAGACTATCCGTCATCTGGCGGTTCCGATACCGAATTCTCCGCTTTT
AGCAGCTGTAACAAACGATACAACAGATCCAGAGGAAATTCACCAGCAAC
AAGCCCAAAGCTGACTCGAAAGGCTGGTAACTCACCCAACGCTAGCCCCA
AAACCTCACCTAAAAATGGACGCAAGAACAAAGTCTCACCAGAACGTAAA
CAAAGCAGTAACCAACATAAGTTGTCTCCACTCGTCAATGGTGTACAGAA
AAACAGCCCCAATTCCAGCCCAGAATTCGAACGACGTGGTATAAACAAAT
CAAGAAACAACTCATGGAACGAGCGCCGGTCGCGCGGAAATTCATTCGAA
GGTGAATGGCGCGCCAAATCAAGAGGAAACTCATTCAACGAAGACGCACC
ATCTTCGACAAAAGAAGCAGAACTTTCACCATGGTTAAAACGAAGAATGA
TGGCCGCCGcagaacaaaatttgaaaaattcaccAATCGCCAACAATATC
CCACAACTCGAAATTATCCGCCAACCAAAAGGACCCGATGGTTCAATTGG
CTTCTCAAACCATCCTTTGAAGAAATACGTATTGGTACATGCTTACTGAG
AAGCTCCAAGCATCTCTAAAACAGACAATTACAAATAAACTTACATTACC
CttttcctcaaaaaaacgaaaattatttCCTTCAAAAACACACCATGTAC
ATATATAtttttaacgattttatttttttggaaactttttacATAATTAT
Ttgttaaactgaaaatattgtattgtattttaagaaaattctaaatatga
aaaaaatgatgcaaaatgtaaaggagattttcattttttattgtctttaa
ttttaaattaagAAGAAATTCTAAGTGCTTCCTATAATGGTAAAGAAATT
GTGAAAGAAGAtaattattttgtaaatctGCAAGGATTTCAAAATACCAT
CAAAGTAATTAAATTTAATGATACTATTTTGGTTGAGGAAAGGATATTCG
ATtcgatttgcaaaaaaaaaaaaataaggtttCGTAATGCGAtcagaaat
aattttgtttCACTGTCGTCTACTTATTCCAATCGAGTATGCTTCTTATC
TCCTTAATCCTGACAAAAACAGGACGTAAAGATAaacatcttttcttttt
caaagaaaaatgataaatttcattcttcttttAAGGTAGCTTCTAAGTTT
AGccccttttttatcaaaatataccTTTATAAACACATTATCAGACTGCT
TATCGGTCTTTAAATCTCTCTTGTGACGTATTTGGGTATTTGACCTACAC
Acgatcttttttataagaacatccaaattttttgaagccttcagaagttc
ttaactttttgagtttaaagcctaaaaatgttcctaacgtgttcttattt
tgaccattttgtgagtatttttgaccattttcctatgaaatagggtgttt
ttgagtctacAAA

Coding sequence (CDS) from alignment at sc0000079_pilon:314881..317543+

>MSTRG.11063.1.p1 ID=MSTRG.11063.1.p1|Name=MSTRG.11063.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1497bp|location=Sequence derived from alignment at sc0000079_pilon:314881..317543+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTTCAGAACAAGTACCAGAGATTCAAGTGGAATTCCAAAAAGTTGA
ATTGGAACGACATGAAGATGGCTTCACTACAAGCTCTTCTGATGAAGAAA
GAAGATCACCGACGGCCATGCGGACAATCAAACTGGTCCCGCGCGCACAA
TTCGAACGCTTAGATTCAGGTTCGTCCATTGGTGAAGAGGAGGATCCACA
AGAGCTGACAGAAGAACTCCGTGAGAAAATCATCATCCAAGCTGAATATT
ATTTCTCTGATGAAAACCTGAAGAAAGATGGATTCCTTTTGAAGCACGTC
AAACGAAACAAAGAAGGCTTCGTCAACCTGAAGCTTCTTGCTTCCTTCAA
AAAGATGAGATCGTTGAGCCGTGATTATCGTGTTATCGGTGAAGCATTGA
AAGACTCCAAAGAGCTTGTTATCAACGAGACAGGTTTGAAATTGAAACGA
GTGACACCGCTACCAAAAGAACTTTTAGATCAAGCTCGTGTCAAACATAT
TGTCCTCACCAAAATCCCAAACGAGAATCCTTCAATGAATTACATCAATG
AAGCCTTTGAAGGTCACAAAGATGATGTCGTTTCTGTCAGAATTATCAAA
CCTGGAAAGAAATTCCCTAACGATTTACAATCCCATTTCTCAAGACATCC
AGAGCTTCGTGAAGAAACAGTCGCTGTTGTCGAATTCGAAAATCCAGACA
TTGCCAACGAAGCAATCAAAACCAAATTCTCCAACAAATACCAAGGACTT
CAAGCTAAGTTATTGGAATTGGGACCCAAACAAGCCAAAAAGATCAACAG
CGCCAATAACAGTGACGCCGGAGATTCAGACTCTGCCGTCGAGCGACGTG
GCTCAACCAAAGGGAAACGAAACAGTCGCTTATTGGAGGTATCCGGACAA
GAAGACTATCCGTCATCTGGCGGTTCCGATACCGAATTCTCCGCTTTTAG
CAGCTGTAACAAACGATACAACAGATCCAGAGGAAATTCACCAGCAACAA
GCCCAAAGCTGACTCGAAAGGCTGGTAACTCACCCAACGCTAGCCCCAAA
ACCTCACCTAAAAATGGACGCAAGAACAAAGTCTCACCAGAACGTAAACA
AAGCAGTAACCAACATAAGTTGTCTCCACTCGTCAATGGTGTACAGAAAA
ACAGCCCCAATTCCAGCCCAGAATTCGAACGACGTGGTATAAACAAATCA
AGAAACAACTCATGGAACGAGCGCCGGTCGCGCGGAAATTCATTCGAAGG
TGAATGGCGCGCCAAATCAAGAGGAAACTCATTCAACGAAGACGCACCAT
CTTCGACAAAAGAAGCAGAACTTTCACCATGGTTAAAACGAAGAATGATG
GCCGCCGcagaacaaaatttgaaaaattcaccAATCGCCAACAATATCCC
ACAACTCGAAATTATCCGCCAACCAAAAGGACCCGATGGTTCAATTGGCT
TCTCAAACCATCCTTTGAAGAAATACGTATTGGTACATGCTTACTGA
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11063MSTRG.11063Clytia hemisphaerica_ch_hm2_pilongene
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11063.1.p1.exon1MSTRG.11063.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11063.1.p1MSTRG.11063.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000079_pilongenomesc0000079_pilon:314881..317543 +