MSTRG.11346.1.p1 (mRNA) -

Overview
NameMSTRG.11346.1.p1
Unique NameMSTRG.11346.1.p1
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000082_pilon:57589..63270-

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>MSTRG.11346.1.p1 ID=MSTRG.11346.1.p1|Name=MSTRG.11346.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5682bp|location=Sequence derived from alignment at sc0000082_pilon:57589..63270- (Clytia hemisphaerica_ch_hm2_pilon)
AGTTACTGGAGCCGAAGATAAAGAGAGAGAAGATACAGACTTCTTTCAAT
CAACAATTGGATTATGAAATGGAAGATTCAACAGGAGGTCATTTCAGTAG
GGGTATGTTTCTTAAAACTTTAGAGGGTTTACCTCCGTATATCTCCGAGG
TTTATTTAGTTTTTGGGTTGTGGTTTTTTTATACACGATGAGCATCCCCT
ATGGTCAAAATATATCAGAGGGGATATGCACAGTCTAGGGATGGCGCGGA
GGAATAACCTTTATCGTCGGGACTTTTGGCAGAGATTTAGCCTTTCGTTG
GGAAAGAAACTGGGATTTTCCTATTTTAATAACTATAATATAACTTTATT
GCTATTTTAATTGAGATTTTTTCGTGATAATTACGTGATGTATCTAGATA
TTGGTAAACAAAGGGATAATAGATTTGTAGATGAGCGCAATCATTTAGCT
GGCAAAGTACGAATGCATTGCGTTCTGAACTTGGGTGAAAGCAATTCTGG
TAAACTAGACTGTAAATAAGAAGCATTGTGATAGAAAATAGTTAACTGGC
TGGATATTCAGGCTAGTGTAGAAGAGGTTCGGTGGAGTCTCTAAGCTGGA
ATACGCACGGGAAACGCAAATTTGTTGGAGTTAATGAAATTTCAACTTAT
GAAGTAACGTTTATAAGGCATTGTTAACTGAAAGAACCTAAAACTTGTTC
AAGTCAAGGAGACACTCGAATAGAGGTTGTATCTGAGATGGTCACTTTCA
CTTTCGTTTCAGACATCGACAACGACGAGCGAGTCAGCAAACTGTGCAAA
TTAAAAGCGCAACTGATCACGTGCTTCGAACCTGAAACTCTCAAAGATAT
CTTGTTCGAATTACATGAAATTCCGCCTGAACAAAGTCACGCCGTGGTTA
GTTTAATACATCTTTAGCTTTTACACCTAAAGATTTATGGAAGGGAGTTG
AGCTCCTAAAATGACAGAAACTGAATTATATCTGAAGCTGCTGCATTAAA
ATGCTCAAATAAATGAATTCGACAGACTTTTCATAAATTACGTCACGACC
AACGCTTATCTCATTTTTAAAAATATTGCTATGGTAATTTATTCCCAGAG
GAGTTCATAAGAAGTTAACTCTTTATACAAGTAACACTTGAACACTCAAA
GGATTTAATCACCTTGTTATTAGTTTCAAAACGAGGCAGTCGTTGCACTT
AAAATAATTTATGAAAAAGCCTATTGATAGATGTATCATACTATTGTTCT
ATTTTTCTTACTGTTCTTCTCTATACTGGCTGCGTTTAGACCAGCCTGGC
ATTTGTAATTGCTTGCAATATTCTTTTGAATTCTATTGTTCCACGCAATT
GTTCGGTTTGTCAAATGCCTAAAGATGCCAGCGTGTTGGCATTTCGTTGG
CATTTGAAATGCCATTTTGAGCAAAGGAATCCCCTTTTCTGGCATTTCAA
ATCAAACAAAGGAACCAAAACAAAGAGAAAAAATGACATTTTTGATTTTT
TAAAGTATTTGCACGTTTTTTATTCAGTTCTTTCTATAGATTGTAAAATT
TGCAAGATTTGCCATAGCCTAGCCCTACGGCAAAAAGTTTCAGTCTTAAT
GACTGCAGTTTTTGAGAAATTCCATGCTTTCCATTGTTTGATATGTCAAA
GTTGAACTTGAGGGAATCACCTTTTCAGTAATGACTCTAAAAAGACGATT
CCTTAAATGCCATGACAGAAAATACAATGGAAAAGCTATTAAAATCGAAT
CCCTCATGAGCAAATGCCAAATTACAAATGCCAGTTGGTCTAAACGCAGC
CATTATGTTTGACTTCAAGGTCATTATTCAAGTTTTCTTTTGAAGAAAAC
GGCGAATTCCATTTCTTTGTTTGTTGATTACTTTCAATTTCAAGTCAATT
ACTTTTAGGCATTCGAGATGAAGTATTACAAAGAGATTTTCAACGAAATC
CATGATTCCTTGATGAGGGACACAGTGCATATTTTCATCGCAAAATCTAA
ACAACTTACTTCTCAAAAGGTGAACATTTCTTTCTTGTCATTTTTTTTTC
ATTAATTGTAATAACTGTTCAGCCCACTTCGAGCTGTTGCTATTTACCTT
TAAGTTTTCAATAATAGGTCTCAGCGTTTTATAAGTCATTCCGGCTGATA
CTATGAGACCTGTATCTTATGGGAGATGTCGAAAATTTAGGTAGTAGAAG
AATACTTCGTCTAGGCACAATTTAGTCACGTAGGGAGACTTTTCCCCATC
TAATATTTTAACTTTTCTTTGAGTGCAAGAAGTAAGGGGTCGCTTTCATA
GGACATTTTGGCCGATGCAATGGTGTGTGAACAGCAAATCCTCTAAGTTT
TAAGACCTAAAGTTACGCTTTGTTTAGCGAGTAAAAATAATTGAAATCGA
TTATCGATTGAAAACCTATTCATAACTTGATAGTGTCAATGTTTTACACG
GATAGCTTAGTTATCTAAGACTTTAAGACAGTCTGGAGCTAGCGCCTTAG
GCATCTTACCTCGCTCTCTTTCTCGTATTGCAGCAATTCACGAGAGCTTT
GAACATTTTAAACACGTGTCTCAAGATTCTGACGTCATACGGTACGAGCG
AGTCCTGGTTGCTCAACATCTAGGGTGAAAATACCATGCATCATGAACTC
TTGTGGACCGAATTGAAATTTGCTGAATAAGACCCTGATAAGTAAAGGAT
CTATTTGCTTTCTTATAACAGACGGCTTTTTCTACAACGAGGCGTTAAAG
GGAAGAGTTGGCGAGGATTGTATTTCTTCTAATTTTCTAGAAGTATCGGG
GAGATTTGTTAAGATAAGAGGATGTGCCTTCTTTTTTGGACCAAATTAAA
ATTCACTGAAGAAGACCCTGATAATTAAAGGGTTTACATTCTCTAGACTT
TTTCTTAGATAAAAAATGAAGTAAAGGTGAAAGAAAGAGTTTGTTAATTC
TGCTTTATCAGCATCAGAGACGCGCTTACTTTGTTTTTTTATCTATCGTC
AAAAACAATACTCTGTTTAAAAGATGTATCTCCACTTTTTGAGAGCGTTT
GTTTTGGATTGTCCACATAGCGAAAAGTTTGACTTTATAGACCTTCAAAA
GCACAACGCACCGAATCTAAAGCGATTCCATCCTCATCTGCGTTAATTTC
TCTTTCACGTTAATTAATTACACAACAAAAGAAAGGTAATGGCTTTCACG
GTTTTCCAATCATTTCGAAATGAACTGTGCTATCAATTTTGGAATGGCTA
ATTGATCTTTATATAATCGAAGCGGCCGTAGCACGAAGCTAGACCATCCA
ATTACCGTGCTCAATTTTTTGGTTTCAAACCACTTCGGTACTTGATTCCT
CTCTGCTTGAAGTTCAGCAGTCAAAAGACACTTTAAGGTAAGTGGAGAAA
TCTAGAGAAAGGGGTGATCCTTTCCTACCTTCGGATAGACAGCTAAAGAG
AAAGAAAGCCTGTTATCCTCGTGAATATTTCGTATGTATTTCCCTGAATT
TTCATCCATAGAGCTAATACATCAGAGACGATGCGACGATCAAAAGCTTG
CATACAGCATAGTAATCAAAGTAAAATATCCCTAATCATACTGTTATGAC
AATGGGGTTCACTGTTGGCGGTGGAGTGGATTATGCTCAGAATTATGGCA
GAATTAGAAAGCTCCCCCCACAACGTTCTTTCAACGTTTATCTTATGTTC
ACAAAGTCAATATAACGTTTTAGATGAACGTTGCAAAAACGTTGTGTGCC
AGCTGGGCGAGTAAAAGTCTCGCAGAAAAGTTAACAATTTTTATGAATTA
TTTCTTTGAATGCCATTGAAATTGTAACCTAAACAGATAACACAAGTTGA
AAATTTTCCTCTTTATCAGACCCGCCACCTCAACCTCACGTCTACCTTTC
CATTGTGGCTTACCTCTTAAACAATCGGGAAAATCAATTCCTAGTGGACA
CTTGCGCTAATTTCGATCTCAACATCATTGAGTTTCAACAGGTATATATG
GATTCCTATTAACGAGGTTAAGCACGGGTTTATTTTGACCGTAAAGTGCG
CTATCAAAGGCTTGTACATAACTTGCCAAAGCAAACCATGCAAGTGAAGT
CTTATGTACAAGCCTACGATATCGCATTGAACGGTCTAAATAAACACTTG
CTTAACCTCGCTATTGTTTGTGGTATACCGTATTACTTCAAATAAACGCC
CCCTCAAATAAACGCCCCCTTCGTATAAACGCCTCCCCTCTAGGAGGGAC
GTTCATTTGAAACAAGTAGCTGTAAGGGAGAATCATATCGAGGAAAAATT
AAGTATTATAGTCTTTCAGTATTCAAATTAATTTTGACCCGTTTTTTACA
TCTTAAAAATGACATATTTGAACTGAAAGACGACGAAAAGGCAAAATAAG
GTTCCCATTCACTTTATTAAAGTGACCTCGGTTAGAGACTATTTAATGAA
CGCCCCCTTCTTTTAAACACCCCTCCTAAAATCCAAAAAACTAACTAACG
CCCAGGGCATTTTATTCGAAGTAATACGATAAATGAAATGCAAAATGTTC
TTCTGAAGTCTGTTCAGGACAAGTGTGAATTCATTTTTCTTTTTATGTTT
ATACCTTTGAGGGGGTTTATCTAACAAATGCTGCATTACAAAAAAGAACG
CTAAATTTCATAAAGAACGACAAATTTTGCCCTCCACAACCCCGACCGAA
AGTGAATGTAGCACCCCTACATATTCATTCCTCTTTGTTTATGACGGGAA
TCAACTACATGTGGTTTAATAAAGTGACAAATTACGCATGCGTGTTATTA
ATGCAGGAATTGTCCGCTAACTCACTGTTTTCAAGGAAGTCTTTATAAAT
TGTTATGAATTTAATACCTTTGGAAAGATATTCAAAAGCACATTATTCTG
CATTAGTGTTTGTCTAAGCTAAGGTGAAGAAAAACGAAGATTAAGAAATT
AGCCTTTGAATACAACAATCATGGCATGTATTTTTACACCATTGGGAAGC
TGAAAGATCGGCGAGCTCAAAAATATCTACAGTCAACTCTCTCTAATAGA
CCTTATCGGAGTTTTTGATTTTTCTAAAAAAGCGATGCATTGTGGGATTG
TTTCGAGTGTATTACAATAGAAATCTCTTAGGAATTCTTCGAGGGAATTC
TATTGTAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAAAA
ATCAAAAACTCCGATAAGGTCTATTAGAGAGAGTTGACTGTACGTTTTAT
GAGGAGCTTTTGATTCTTAATTGCGATATATGTTATGAGAAATGTCAAGG
AGACACACTTATCTTGAACCGACTTCAGGTTTCATTTCATTATTCATCCG
ATCATTTTCGGCCCGTATCTTAAGGTGGGACAAACGAGCAGTCTTGCTGG
ACTACACAGCCTTTCTGTTTTTGTAATGGTTATTGACTACAAATGTTAAA
ATTTATAGTATGTCGAAAACTTTGTTATTTTTCAAGATTGTTGTTAGGTA
CCAAAAACTGAGTCTGTATATGCTTATAAAGGTTATGCTTATAGAAAAAA
ACATGTACTCGTCTATTAGTTTCTGTTCTTATTTTTATCATTAGATCGGC
TATAACATATCTAAAGCTGTTTGTGCCTCACAACGTGGCATTGATTCATT
GCGAAACCCTGCCACGGAATTGTGGGAAACAG

Coding sequence (CDS) from alignment at sc0000082_pilon:57589..63270-

>MSTRG.11346.1.p1 ID=MSTRG.11346.1.p1|Name=MSTRG.11346.1.p1|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1740bp|location=Sequence derived from alignment at sc0000082_pilon:57589..63270- (Clytia hemisphaerica_ch_hm2_pilon)
CAATTCACGAGAGCTTTGAACATTTTAAACACGTGTCTCAAGATTCTGAC
GTCATACGGTACGAGCGAGTCCTGGTTGCTCAACATCTAGGCATTCGAGA
TGAAGTATTACAAAGAGATTTTCAACGAAATCCATGATTCCTTGATGAGG
GACACAGTGCATATTTTCATCGCAAAATCTAAACAACTTACTTCTCAAAA
GACATCGACAACGACGAGCGAGTCAGCAAACTGTGCAAATTAAAAGCGCA
ACTGATCACGTGCTTCGAACCTGAAACTCTCAAAGATATCTTGTTCGAAT
TACATGAAATTCCGCCTGAACAAAGTCACGCCGTGTTACTGGAGCCGAAG
ATAAAGAGAGAGAAGATACAGACTTCTTTCAATCAACAATTGGATTATGA
AATGGAAGATTCAACAGGAGGTCATTTCAGTAGGGCAATTCACGAGAGCT
TTGAACATTTTAAACACGTGTCTCAAGATTCTGACGTCATACGGTACGAG
CGAGTCCTGGTTGCTCAACATCTAGGCATTCGAGATGAAGTATTACAAAG
AGATTTTCAACGAAATCCATGATTCCTTGATGAGGGACACAGTGCATATT
TTCATCGCAAAATCTAAACAACTTACTTCTCAAAAGACATCGACAACGAC
GAGCGAGTCAGCAAACTGTGCAAATTAAAAGCGCAACTGATCACGTGCTT
CGAACCTGAAACTCTCAAAGATATCTTGTTCGAATTACATGAAATTCCGC
CTGAACAAAGTCACGCCGTGTTACTGGAGCCGAAGATAAAGAGAGAGAAG
ATACAGACTTCTTTCAATCAACAATTGGATTATGAAATGGAAGATTCAAC
AGGAGGTCATTTCAGTAGGGCAATTCACGAGAGCTTTGAACATTTTAAAC
ACGTGTCTCAAGATTCTGACGTCATACGGTACGAGCGAGTCCTGGTTGCT
CAACATCTAGGCATTCGAGATGAAGTATTACAAAGAGATTTTCAACGAAA
TCCATGATTCCTTGATGAGGGACACAGTGCATATTTTCATCGCAAAATCT
AAACAACTTACTTCTCAAAAGACATCGACAACGACGAGCGAGTCAGCAAA
CTGTGCAAATTAAAAGCGCAACTGATCACGTGCTTCGAACCTGAAACTCT
CAAAGATATCTTGTTCGAATTACATGAAATTCCGCCTGAACAAAGTCACG
CCGTGTTACTGGAGCCGAAGATAAAGAGAGAGAAGATACAGACTTCTTTC
AATCAACAATTGGATTATGAAATGGAAGATTCAACAGGAGGTCATTTCAG
TAGGGCAATTCACGAGAGCTTTGAACATTTTAAACACGTGTCTCAAGATT
CTGACGTCATACGGTACGAGCGAGTCCTGGTTGCTCAACATCTAGGCATT
CGAGATGAAGTATTACAAAGAGATTTTCAACGAAATCCATGATTCCTTGA
TGAGGGACACAGTGCATATTTTCATCGCAAAATCTAAACAACTTACTTCT
CAAAAGACATCGACAACGACGAGCGAGTCAGCAAACTGTGCAAATTAAAA
GCGCAACTGATCACGTGCTTCGAACCTGAAACTCTCAAAGATATCTTGTT
CGAATTACATGAAATTCCGCCTGAACAAAGTCACGCCGTGTTACTGGAGC
CGAAGATAAAGAGAGAGAAGATACAGACTTCTTTCAATCAACAATTGGAT
TATGAAATGGAAGATTCAACAGGAGGTCATTTCAGTAGGG
Gene-mRNA-Prot
This mRNA is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
MSTRG.11346MSTRG.11346Clytia hemisphaerica_ch_hm2_pilongene
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11346.1.p1MSTRG.11346.1.p1-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
The following exon feature(s) are a part of this mRNA:
Feature NameUnique NameSpeciesType
MSTRG.11346.1.p1.exon7MSTRG.11346.1.p1.exon7Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon6MSTRG.11346.1.p1.exon6Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon5MSTRG.11346.1.p1.exon5Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon4MSTRG.11346.1.p1.exon4Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon3MSTRG.11346.1.p1.exon3Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon2MSTRG.11346.1.p1.exon2Clytia hemisphaerica_ch_hm2_pilonexon
MSTRG.11346.1.p1.exon1MSTRG.11346.1.p1.exon1Clytia hemisphaerica_ch_hm2_pilonexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000082_pilongenomesc0000082_pilon:57589..63270 -