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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000380_pilon:151619..157321+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_045716 ID=XLOC_045716|Name=XLOC_045716|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5703bp|location=Sequence derived from alignment at sc0000380_pilon:151619..157321+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAATGTACGAGAAAATGCAGAAATCGGATAAAGAAAATGGTGGGGA
TAAACAAAAAGGTGACAAAGAGTATAATGGAGATaagcaaaaatttgata
aagaaaagaatGGAGATAAAGAAGAAAGTAAGAAATATGATGGAGACAAC
AAGCATCCACAACGAATGAGTGATACCGAAGACAGAAACGACAAACAAGA
GAAGAACGGAGAGAGTGaaaaaaaGCTCAAAGAAGTGAAAGATCACTCTA
ACGAACAAGAGAAGGGCGAAGAAAACTCTCGACAaggaaaagaaggaaaa
aatgaaggtaGATTCACACAAGATGAACAACAGAGAGAATCTTCACAACA
TTTTACACAATCACCCAGCAATGATAATGAGCAGCAACGtgttaattctt
tttcaaatgatGTCAGTTGGAAAGGTAAATTAGAGTTGCGTatgtttttt
aggttttgaaACTTGATTAATTACATAAAGAAGACATTCGTTTGTCAATC
GTTTGCCATaagatttttatgttttctgtCTGAAAGAAATAACTCTTTAC
ACCTATACACACCCTCTGTCTCAATCTCAGGTAAAGGGAAGTTCAGTATG
GGAAAATGGTCCAATCGATTGAAAGGAGAGAAAGGCGAGCAAGAAGTTGC
AGACCatgaaaaattagtttcaacCGGTATAAATTTCTGCattctaattt
atttttacaaGATACAAAATCCTAAATTTTTGAGCGGGTAGCATTCAATC
AATGGCCGACAAGTgccttgtctgtacacaaacccaatatctacggctag
TTTCAAAATTCGTTGCCGTAGAGGATCGTGAGAAtaataatcgtgagata
cactctggtacagagtaacaAGTGCcccaaaattaacaaaagcaTTATTG
CATCAACGGCCATACCATCCTAGCATTCCTTCCAAAAAGCCGGTAGACCT
TTACTGAGTCCATAGTTAACAAGTTTGTAGCGAGGACTAGAATTTGGGAA
CTCCTGACTTGCGACACTGACGCCACTTGACCACAATAatgcaataattt
tttttcaacctttAGGTAAGAATGACGAGGAGAGGAATGGGGAGGAGAGC
AAATATACACAACAACATCAAAGCAAAGGTGAAGACCATGGATACTCACA
TCAAGAAGAAGGTAAATTACCGCTAGTCTAAAGAAAAAGCTTTTACCAGA
ACTTAGCAAAGGTTCCAATTACCCAAACGAGGAACGAAATAGGTACTAAA
AACAAGGAGAAAGTTTGattgaaaacaataaagttTAATCATAGTGGAAT
ACCACCACTAGTTAAGATTGTGTCACGTtgtcaaaaatgtttgaaaactg
GAAAATTGAGATCGTGaaaaaaaCTCCGTATCTTTCCTTCATCAGGTAAT
AGGGAAGAGAACAGATACCCTGAGGAGAGTAGGTTTACACAACAACATCA
ACATCAAGCAGATAGCAAGGAAACTGATGAATCTCCATCAAAGAATGGTG
CTAGTGATGGTGAACTGAGcagtaaagaaaaagaaaggtcAGAAATTCAA
ATAATCATTGTTATTGATAAAGTGGACTCTTTACATGACTGAAGGAACCC
AAACATCGCTCTCCTTTCAGCtcctttatttataagaatttttgtcatCC
AAACTCTTGTACTGAGATCTTCTCAAGCTTCGTAAAAGGTTGGATCGAAT
AATCCGTTGATTCAAAGCTTTGACTAAAGAGATCATCCCTTATTTTTGTT
GCCTGCAGATACCAATTTCTATAgtgttgaaaaaaatattttttgttcca
ACTGTTTTCTaaagtttaagtattttattttgaaattttcaacttaaaaa
CTATAGGTTGGTTTTCAACTATTTGAAAGCACATCGACATGAATTTATGA
AAGAGGACTCCCAACCATCAGACCATCACGGAGAAGGCGGGGGCGGAGAA
CAGAGCCGCCCAGCTAACATGTACCAGCATGAGCAAGATAACAATCAGTA
TGGCAAAGGACAGCAAATGTATGATGAACGAATGGGATCGAATTCTGAAG
GGAAACTCCATCGTGCAGACGAGGAACAGGTTTGCAATAATACAATAGGC
CATTTAACGGTCGCATGAATTAAGGATGGGTAACAGTGCAATCAatgaaa
atcaatcaataatttatCCCTATAATACATccgaaattttgaagattttg
tgtCACATCAAGGGGGAGTCATGATTGGCCCATAAATGTGAGGCTGTTCA
TATTTTATAGTTCCATTTTAATCCTTTTGTAATTGACAGGTTTTAGCAGA
CGCAAAACCCCTGCGGCAAGCTGGAGGTTCTCACGAGTTACCATTCGAAT
ATGTCGCACAAGAAGAAGATAAACATCATCCAACGAGTGAATCACATGGa
atggaaaacgaaagtgaaagtagtcaACAAAGACACAAGTTCCATGGAGA
GGACGAGAAGATTGGAAACGAGCCAATGACGCGTGAAGAAATGACAGAGG
AgaaatataaaaatgttttcaataatGAGGATGGCACAAAGAATGACCGA
TCTAAAGGTAGGAATATTCTTTACTTAAACAGCCCAGGAGGGATAGAATT
TGCTTTCAGCCAATAAAATCACAAGAAACTTGAATGAAGGGGAGGAGTGT
GTAGCCATTGTAAAATCAGGGTCTACATAAAGTGTATCCTCTGAAGTTTG
GCAAGGCTACGTGTCTTAGAGGGAGATCCGTATTAAGAATTGAAATGTGA
TTGTTATGATGGCGAAATTTATGGAAGTTcgaatattttttaagaaactt
ctAGACTCCTTTATAGATACTCTTAAAATTGTCATTCAAGTATCTTCGTA
TTTGCGAAAAAGAATGTGCTACTCttttttttCCTGGTTAAGAGAGATAA
GCCAGACTACACCTTTCATTTTCATAGGAGGCGAGCAGAGTAAGGACgga
aagaaagaagatggaaagaagAATGGTGAACTGTTCACATCtgaagataa
gaacaaagagaaagaaaaagataatgaagaagatgatgacaaatacaaaa
gTTTCCAAGGTAACGCGATGCGTTGTAATGAAAGTTTTTCAAGTGATTCG
AAAGCTTTTGTATTGTCAATTTCTACCAGAGATTCGATTGggccattttt
caaaatctagacATGTTCCCTACTTTCTAAAATTCGAATACTTAAGAAAG
ATGGTTGAAAGCCGATTTAAGGAAGAGTTGATAACTCTATTACTTAATAG
Atactcgaattagagagagttgagtgaaatgattttcaaattcaacaagt
AACACTATTCAAACAGGTTTCAAATTCCGATACGGCCCAACCGAGTCATT
CAACAAACAACAAGACGATAAACCTAAAAAGCTaaagaaaggaaagaaaa
tataCCCCGACGATGATAGCGCTCCTCAACAATCTATCAAGACAAAACCG
AGTGTGGGCGGAGCCAATTTTGGTGTTAGTGACTTCACTGGTACTGGAGG
CGGGGTTGGTGGAAATACGGGCGGAATGGAATCAGACGCCCCTTCAAAAG
TGAGCAGCCACCACGAACACGAAGAGGGGACGGCACCTTCACCTTTTGAG
CCAGAGGAGAAATTATCCTATCACCCAACCAAAGAACCTGGTTACAGTAG
ATTCAAAGACGATCAAAATCGTGAAGAAGGTATCATATCATTCCTACCTG
CTTATGAatgataatctttttaaagtaaaaCGTTGTAAACGCATCCTTCT
TTTTTAACCACCCTCTCGAATAAACGCCACTCCTTTGAGGACAAATTTTT
AATGAGCACCCCTCCCTCAATTGAACCCTCCTTCGAATAAATGACTCCCT
TTAGGTCGATTTTAAGTCGATGAAGTTAACCTCTTGaaaaaaaaCGGATG
GAGGAGATGACCGAAGAAAATACACTAAatctattttcaacattatagAA
AGACAGCCGCTAAGCCATCAACAAAATGGAATGGACAAGAACACTTCACC
TTACCATAGCCATGAAATCCAAGAGAAACACGGCGAAAATGAACACCAAT
CAGTCACAAACAGAGAATCGTTCGCAAGTGCTCCCAATGAGTCGGAAGCT
TTCAGTATAGGTATACAGCGTAATTGATTAATGTGTCTTCAACAGACTAT
CTTAAGTTTActtttaaaatcgaaataatTCTCCTTATCCATACTGCTGC
TAATGAAAGCCGAACTTCCGGTATTCCAGTATTCATCGGAACATTTTTGA
CCGGTAcctgaaaaatcttttcatgaAAAACCAGTAcagtattttggtat
ttttgtacCCTTGAAAGCCACTTTTGATGAAATTCGATTTCTCTCCCTTT
TACACAGGTAAACACCATCACGTGAAAGGCTATGCAGATTCTCACGCAAC
ATTCAGGATTCACAATAAAAAAGTCGAAGATATCACCTCAAAGAAATCAA
GCCCAAATCATCGGTACGTATTATTTCACCCGAAATTCATTCACGCTCAG
ATTATATGTTGCTTAACCCTGGATAAAACAATCGTTCaaaaaaaTATGGA
TACATATTTGGGCTGAAAGttctaaagagaaaagaaaacctAATTCAAAG
TCCAAAAGCTAAATGACAGAGCCAAAATCAGGACTATCCCAGGACtatta
aattttgattgtttttaggGGGTCCATGGTAAACCAGTTGGACTATCTAT
GCACTGAACGGAACATAAGAACGGAAGAATTTGACCACTCAGGTCAGCCC
TCCTTTGAAAGCCATTGATAgacaatctttttcatttcttctaGATATGG
AGGTGACGAGAGCGTACAAGAACAGTTAGAAGGGGGCGACCATAATGGAC
CAGGTgaaaacgtcgataaaatcaaagtcagtgatggggaaaaagataaa
gaaaagaaaatcaaagataaCGGTGAGTATGGATGGAAAAGAGGCTAGGC
TTTTAAGGTGCTTTTTATCAAAACATGGGGACAGTCAAAAGGTAGCTAAT
GAAAGGTAGAGTTATCGAGTACGCCAATGACCACGAGCGAGACTATATAC
TTTTTCATGGGAGCAATTTCCTAGGTGGGGCAAATTCAAGGATAATGTAA
AAGATTCTGCGGGGGGTGATTAATTTTCCTCGGCGGTATATTTCTAAAGG
CTCTTTCAGGAACAAAATCCCACGAGGGAAATTTCCTTTGATTTTTATAG
AGAAGTTCATGTGGTAATAAATCATACTCATTCCAGGTAATCAAATCAAA
TACAAGCACGAAGAGAATGAGGAGCAAAAAGAGAATGAAGAAAAACTGTT
CAACAGTTTAAAACAATCCAAAGATTCTAATGATGAAAAAGTTGGTCAAT
TTATTGATGGCGAAAGGCATTCTGATAATAAAGATGAGAAGTTCGTTCAC
GATAAACCTAAAAAGTCGTGGAAATTCAACGATAAAAATTCCGACAACAT
GGTCGAATACGAGGATCATAAGCATTGGAAAAATCCAAAAGTCGGTGAAA
ATGAAGATAGCGATTCAACTGAGAAATACAACGAACGCCCGAAGAAGTTT
CAAGATAACGAGGAAGCTAAACAATTACATCATTTACATGAAGTAAGAGG
GaacaatgattttgatgacaaTGATGAAACAAAAGCTGGTCGATTTTCTG
ATGGACCAACTCATCACCAGAGAGGAGAAGATGAAAATGAGAACTTCTCT
GAG Coding sequence (CDS) from alignment at sc0000380_pilon:151619..157321+ >XLOC_045716 ID=XLOC_045716|Name=XLOC_045716|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5214bp|location=Sequence derived from alignment at sc0000380_pilon:151619..157321+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAAATGTACGAGAAAATGCAGAAATCGGATAAAGAAAATGGTGGGGA
TAAACAAAAAGGTGACAAAGAGTATAATGGAGATaagcaaaaatttgata
aagaaaagaatGGAGATAAAGAAGAAAGTAAGAAATATGATGGAGACAAC
AAGCATCCACAACGAATGAGTGATACCGAAGACAGAAACGACAAACAAGA
GAAGAACGGAGAGAGTGaaaaaaaGCTCAAAGAAGTGAAAGATCACTCTA
ACGAACAAGAGAAGGGCGAAGAAAACTCTCGACAaggaaaagaaggaaaa
aatgaaggtaGATTCACACAAGATGAACAACAGAGAGAATCTTCACAACA
TTTTACACAATCACCCAGCAATGATAATGAGCAGCAACGtgttaattctt
tttcaaatgatGTCAGTTGGAAAGATGGAAATGTACGAGAAAATGCAGAA
ATCGGATAAAGAAAATGGTGGGGATAAACAAAAAGGTGACAAAGAGTATA
ATGGAGATaagcaaaaatttgataaagaaaagaatGGAGATAAAGAAGAA
AGTAAGAAATATGATGGAGACAACAAGCATCCACAACGAATGAGTGATAC
CGAAGACAGAAACGACAAACAAGAGAAGAACGGAGAGAGTGaaaaaaaGC
TCAAAGAAGTGAAAGATCACTCTAACGAACAAGAGAAGGGCGAAGAAAAC
TCTCGACAaggaaaagaaggaaaaaatgaaggtaGATTCACACAAGATGA
ACAACAGAGAGAATCTTCACAACATTTTACACAATCACCCAGCAATGATA
ATGAGCAGCAACGtgttaattctttttcaaatgatGTCAGTTGGAAAGGT
AAAGGGAAGTTCAGTATGGGAAAATGGTCCAATCGATTGAAAGGAGAGAA
AGGCGAGCAAGAAGTTGCAGACCatgaaaaattagtttcaacCGGTAAAG
GGAAGTTCAGTATGGGAAAATGGTCCAATCGATTGAAAGGAGAGAAAGGC
GAGCAAGAAGTTGCAGACCatgaaaaattagtttcaacCGGTAAGAATGA
CGAGGAGAGGAATGGGGAGGAGAGCAAATATACACAACAACATCAAAGCA
AAGGTGAAGACCATGGATACTCACATCAAGAAGAAGGTAAGAATGACGAG
GAGAGGAATGGGGAGGAGAGCAAATATACACAACAACATCAAAGCAAAGG
TGAAGACCATGGATACTCACATCAAGAAGAAGGTAATAGGGAAGAGAACA
GATACCCTGAGGAGAGTAGGTTTACACAACAACATCAACATCAAGCAGAT
AGCAAGGAAACTGATGAATCTCCATCAAAGAATGGTGCTAGTGATGGTGA
ACTGAGcagtaaagaaaaagaaagGTAATAGGGAAGAGAACAGATACCCT
GAGGAGAGTAGGTTTACACAACAACATCAACATCAAGCAGATAGCAAGGA
AACTGATGAATCTCCATCAAAGAATGGTGCTAGTGATGGTGAACTGAGca
gtaaagaaaaagaaagGTTGGTTTTCAACTATTTGAAAGCACATCGACAT
GAATTTATGAAAGAGGACTCCCAACCATCAGACCATCACGGAGAAGGCGG
GGGCGGAGAACAGAGCCGCCCAGCTAACATGTACCAGCATGAGCAAGATA
ACAATCAGTATGGCAAAGGACAGCAAATGTATGATGAACGAATGGGATCG
AATTCTGAAGGGAAACTCCATCGTGCAGACGAGGAACAGGTTGGTTTTCA
ACTATTTGAAAGCACATCGACATGAATTTATGAAAGAGGACTCCCAACCA
TCAGACCATCACGGAGAAGGCGGGGGCGGAGAACAGAGCCGCCCAGCTAA
CATGTACCAGCATGAGCAAGATAACAATCAGTATGGCAAAGGACAGCAAA
TGTATGATGAACGAATGGGATCGAATTCTGAAGGGAAACTCCATCGTGCA
GACGAGGAACAGGTTTTAGCAGACGCAAAACCCCTGCGGCAAGCTGGAGG
TTCTCACGAGTTACCATTCGAATATGTCGCACAAGAAGAAGATAAACATC
ATCCAACGAGTGAATCACATGGaatggaaaacgaaagtgaaagtagtcaA
CAAAGACACAAGTTCCATGGAGAGGACGAGAAGATTGGAAACGAGCCAAT
GACGCGTGAAGAAATGACAGAGGAgaaatataaaaatgttttcaataatG
AGGATGGCACAAAGAATGACCGATCTAAAGGTTTTAGCAGACGCAAAACC
CCTGCGGCAAGCTGGAGGTTCTCACGAGTTACCATTCGAATATGTCGCAC
AAGAAGAAGATAAACATCATCCAACGAGTGAATCACATGGaatggaaaac
gaaagtgaaagtagtcaACAAAGACACAAGTTCCATGGAGAGGACGAGAA
GATTGGAAACGAGCCAATGACGCGTGAAGAAATGACAGAGGAgaaatata
aaaatgttttcaataatGAGGATGGCACAAAGAATGACCGATCTAAAGGA
GGCGAGCAGAGTAAGGACggaaagaaagaagatggaaagaagAATGGTGA
ACTGTTCACATCtgaagataagaacaaagagaaagaaaaagataatgaag
aagatgatgacaaatacaaaagTTTCCAAGGAGGCGAGCAGAGTAAGGAC
ggaaagaaagaagatggaaagaagAATGGTGAACTGTTCACATCtgaaga
taagaacaaagagaaagaaaaagataatgaagaagatgatgacaaataca
aaagTTTCCAAGGTTTCAAATTCCGATACGGCCCAACCGAGTCATTCAAC
AAACAACAAGACGATAAACCTAAAAAGCTaaagaaaggaaagaaaatata
CCCCGACGATGATAGCGCTCCTCAACAATCTATCAAGACAAAACCGAGTG
TGGGCGGAGCCAATTTTGGTGTTAGTGACTTCACTGGTACTGGAGGCGGG
GTTGGTGGAAATACGGGCGGAATGGAATCAGACGCCCCTTCAAAAGTGAG
CAGCCACCACGAACACGAAGAGGGGACGGCACCTTCACCTTTTGAGCCAG
AGGAGAAATTATCCTATCACCCAACCAAAGAACCTGGTTACAGTAGATTC
AAAGACGATCAAAATCGTGAAGAAGGTTTCAAATTCCGATACGGCCCAAC
CGAGTCATTCAACAAACAACAAGACGATAAACCTAAAAAGCTaaagaaag
gaaagaaaatataCCCCGACGATGATAGCGCTCCTCAACAATCTATCAAG
ACAAAACCGAGTGTGGGCGGAGCCAATTTTGGTGTTAGTGACTTCACTGG
TACTGGAGGCGGGGTTGGTGGAAATACGGGCGGAATGGAATCAGACGCCC
CTTCAAAAGTGAGCAGCCACCACGAACACGAAGAGGGGACGGCACCTTCA
CCTTTTGAGCCAGAGGAGAAATTATCCTATCACCCAACCAAAGAACCTGG
TTACAGTAGATTCAAAGACGATCAAAATCGTGAAGAAGAAAGACAGCCGC
TAAGCCATCAACAAAATGGAATGGACAAGAACACTTCACCTTACCATAGC
CATGAAATCCAAGAGAAACACGGCGAAAATGAACACCAATCAGTCACAAA
CAGAGAATCGTTCGCAAGTGCTCCCAATGAGTCGGAAGCTTTCAGTATAG
AAAGACAGCCGCTAAGCCATCAACAAAATGGAATGGACAAGAACACTTCA
CCTTACCATAGCCATGAAATCCAAGAGAAACACGGCGAAAATGAACACCA
ATCAGTCACAAACAGAGAATCGTTCGCAAGTGCTCCCAATGAGTCGGAAG
CTTTCAGTATAGGTAAACACCATCACGTGAAAGGCTATGCAGATTCTCAC
GCAACATTCAGGATTCACAATAAAAAAGTCGAAGATATCACCTCAAAGAA
ATCAAGCCCAAATCATCGGTAAACACCATCACGTGAAAGGCTATGCAGAT
TCTCACGCAACATTCAGGATTCACAATAAAAAAGTCGAAGATATCACCTC
AAAGAAATCAAGCCCAAATCATCGATATGGAGGTGACGAGAGCGTACAAG
AACAGTTAGAAGGGGGCGACCATAATGGACCAGGTgaaaacgtcgataaa
atcaaagtcagtgatggggaaaaagataaagaaaagaaaatcaaagataa
CGATATGGAGGTGACGAGAGCGTACAAGAACAGTTAGAAGGGGGCGACCA
TAATGGACCAGGTgaaaacgtcgataaaatcaaagtcagtgatggggaaa
aagataaagaaaagaaaatcaaagataaCGGTAATCAAATCAAATACAAG
CACGAAGAGAATGAGGAGCAAAAAGAGAATGAAGAAAAACTGTTCAACAG
TTTAAAACAATCCAAAGATTCTAATGATGAAAAAGTTGGTCAATTTATTG
ATGGCGAAAGGCATTCTGATAATAAAGATGAGAAGTTCGTTCACGATAAA
CCTAAAAAGTCGTGGAAATTCAACGATAAAAATTCCGACAACATGGTCGA
ATACGAGGATCATAAGCATTGGAAAAATCCAAAAGTCGGTGAAAATGAAG
ATAGCGATTCAACTGAGAAATACAACGAACGCCCGAAGAAGTTTCAAGAT
AACGAGGAAGCTAAACAATTACATCATTTACATGAAGTAAGAGGGaacaa
tgattttgatgacaaTGATGAAACAAAAGCTGGTCGATTTTCTGATGGAC
CAACTCATCACCAGAGAGGAGAAGATGAAAATGAGAACTTCTCTGAGGTA
ATCAAATCAAATACAAGCACGAAGAGAATGAGGAGCAAAAAGAGAATGAA
GAAAAACTGTTCAACAGTTTAAAACAATCCAAAGATTCTAATGATGAAAA
AGTTGGTCAATTTATTGATGGCGAAAGGCATTCTGATAATAAAGATGAGA
AGTTCGTTCACGATAAACCTAAAAAGTCGTGGAAATTCAACGATAAAAAT
TCCGACAACATGGTCGAATACGAGGATCATAAGCATTGGAAAAATCCAAA
AGTCGGTGAAAATGAAGATAGCGATTCAACTGAGAAATACAACGAACGCC
CGAAGAAGTTTCAAGATAACGAGGAAGCTAAACAATTACATCATTTACAT
GAAGTAAGAGGGaacaatgattttgatgacaaTGATGAAACAAAAGCTGG
TCGATTTTCTGATGGACCAACTCATCACCAGAGAGGAGAAGATGAAAATG
AGAACTTCTCTGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000380_pilon | genome | sc0000380_pilon:151619..157321 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2143-2607:5239 |
| Aaloc | 2014-2139:4796 |
| Aaloc | 1909-2010:4360 |
| Aaloc | 1747-1905:3951 |
| Aaloc | 1384-1743:3319 |
| Aaloc | 1252-1380:2930 |
| Aaloc | 982-1248:2290 |
| Aaloc | 760-981:1858 |
| Aaloc | 619-756:1398 |
| Aaloc | 523-615:1068 |
| Aaloc | 427-519:583 |
| Aaloc | 1-423:1 |
|
