XLOC_045643 (mRNA) -

Overview
NameXLOC_045643
Unique NameXLOC_045643
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000393_pilon:70383..74204-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045643 ID=XLOC_045643|Name=XLOC_045643|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3822bp|location=Sequence derived from alignment at sc0000393_pilon:70383..74204- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATCGAACGAAGAAGCAGATACTCCAAAGAAATATAGTAGATCGCT
ATCTCCAAGTGCTTTTAACATTTGTATTTTATGTACAGAAGAGATTCCTT
CAAATCGACGCCATCGCCTGTTCGATGATAAAAATGTTAAAACAGACGCT
TGCAATAAATTGGAGCAGTGTGTATGTATCCAAATCCAACAATCAACAGA
CTTCCGAATCATATGTGAAAATTGTCTGAGGTCTGTCTCAAATATCACTA
AAAAGCAAAACCTAAAAATCGAAGTGTTCCAGGATGGCAGGAAACATGGT
GAACAAAAATTTATAAGAACTAAGATAAAGAGACTGTCAAAAGGAAACAA
AGAACCAAACAGCAGAAAGAAATTGTCAAGTCAATTCGATGGTTTGAAAC
TTGGAGCTAAAAATTCCACTATGAAAGTAAGTTACTTTTGCTTTGTTTTG
CATTTGATTCGTTTATTTGTTTATTGTAAATGTGACAGTCTAATTTAAAC
GTTCTTTATAAGTACGGGGTAAATTTTTGCGAGGATCGTTATACTTAGAA
AAATTAATTTTTTGGGCCTCAAATTATGCTTTTTATGTAATGTTTGGATA
TACTAAGCAATAGTAACTGTAATTTGGACCTAGGTGTATTCAAAAGAGAA
AAATTCATGCATTAGCTTTGATTGAAAAAATGGACCCTGTCAGATACAGG
TTGCTTAAAATGGACCCTGTCAGAGTCAGAATGCTAAAATTTCCACAATT
CCTTGTAAAAGAGTGCTAAAATGACAAAAAGTTATTTAAAGTTAACCCAG
TCAGTTTGTTTTCGTTGTTTCACTTAAGTTCCAGGATTTTTGTCCCAGTC
AGTCAAAGAATACTTCAAGATTCCAACCATGTCAGAGCCATTTCTTGATT
TTGGACCGACACCTGTCAGAGATTCGCGAGGGTTGAAAAAGGGACCCTGC
CCAGCGGTACGTCATCGTACCCATTTTACCTAAAGTGGTAACCAATCTCC
TTCCCGGGGGATTGGTTATCAAAACGGTCTTAAGATTTTTGTAATTGGTC
GGTACCCGACTTATTCAATAAAACATTAAATTAAAAAATAATGAGGAAAT
AAGAAGGAAAATCCTAAGTAAGACCAATGATTAGAAAGTAATTGTGGAGA
TAGAGATTTTCAAAAGGAGCCAAAAGTAAATGATGTAGTCTTAATATCTT
ATTCAAATAACCGATTTAGGGAATCTATTATTTAAATTTTAGGATCTTTC
CCCAGCACCAACTCTTGGTCAATTTTTTTCAAACTGGGCTCAATTTTAGG
AATTACATTTTACCCTTGTTAAATAAAATACCCTTTTATGTCTGGAATAA
TTTGCTATGTTTCATTAGCCAATTTATCAATTACTTTGAAATTGTGTTCC
AATATTGTTCGCTAAAATGTTAATTAACTTAATGAAAATTATTTTAGGGG
TCTGTCTGGGAACACGTAGAATTTCGGTCAATTGGTTTATGTCATGCATG
TCATACAAATTCTTATAAAGGGTAAAACGAACCCCTAAACTCAGGCTCAG
TATTAAAAATTGGACCAAGACTTAGCGTTGGGGACCGATTATTTCTAAAA
CGAGAAGAGTTAAGGATTCCCAAAATCTATAGTTTATCCTTACTTAGCTA
AGATATGAATTGGCTCCCAGACCAAAGACTTTTGTAAATGCAAATATGGT
TACAAAAACTTTCTAATTATTGCTAAGATGAAGTCGAAATTACTTTTTCT
ATGATTAAGTTTAAAGGCTTGGTCATCGCTGAGTAACTGCGAAAATTTGA
AAAATACATAGTGGGAATTTATAACATCTTGGTTGGACAACCATTAAAAT
AGTGTTCAATACTTCGTAGCGGAATTATATCTTTCGAAAATTCACAATGT
TGAAAATACATTACTTAAAGTTTCATGCTTATCGCAATCATCAGATGTGT
AAAAACATAGTGGGAATTTAAAAAATATATATTTCCAGAATATTTTTTGT
TTTTCTTTAAGATGACGGTTACAGACGAAAAAGGCTCTACTGAAGCAGAA
ATTCACATTCCAAAGCAGCAACAAAAATTGATCAAACTTGCCATGGCTAA
CAATAAAAAACACCTGTTGAATTATATCCTGACCAGTATAAAACCCGAAG
ACTGTGAAATTGAGAATATTGTCATGAAATTCGTCCAGAAAAAATATCAA
ACGTGAGATTAAACAGATTTGCTCAAATAATAACAAAACAACGACGTTTC
GTTGCCATGATGTATCACAACTCACAGAACTGTCGTATGATGCTCAGTAT
CAAGAACTTCAATCGGTTGCACCTTATACATTTAAATCAATTGTTAGTAT
CGCAAAGAATCCACGTGAAAACAGAAATAAACACAAGAAACTGGAAACAT
CTATACCGGCCGTCATGAATGCTGTTAATTCGCTACTGATGTGCAGAAAT
CGAATGCTAAACCGTTGCGCCGTTATGAATAGCATTATTCTTAAGAAGGG
AAAGGCTGACAAACAATGCTTCAATAGATTTAACGCACTGCAGACATGCG
TATCATACAAAGAAACACTATCAAAACAAACAGAGTTGGGCAAGGGTCAT
AGAAATACAATCAAGGAATGGGGAAGGGACATAGTCAAATACAGGCAGGC
AACGAAGGAAGCAGCCAAAGCTCAAATGATGGATGAAGAAAAAGAGTTGG
TTCTAACAAAAGGCGACTGTCCAGTCAATTTGTTCAATGTGGAAAGTAGT
TTCCTAGATAAAGCAGCTATCATGAAACCAAAATTTCGTCTACTTGAGGA
TACAATCGAGGAAGAAATGGAAGTATTTGATACAGAAGAGTCTGACCGAG
CAATAGCAGATTTGCTGGATGAAGAGGTGCCAGTTCTCCCAGTCGATGTT
TCAACACCTGATACTTCATTCGACTTCGATTTCCAGGTTAGTAAACCAAC
GTTTATCTAAATATAACTAGCAGTGGATAGAATTTAGATTAGATCACATC
ACTGATTAGATTACGATTTTGTTTGCGTTGGGAATATACGTGTGAGTGGA
ATATTATCAGACAAAAATTTTCTGAGACAATTTCGATGAAATCTGTAAAA
GAAAGTAGACAGACTTTACTTTTACTGTTAACTACCTGTTTCATAAATAT
GAAATTTTGGAGATCAATATCCAAGCACAAATAAGCATTATCTTTGCAAA
CGTGTGTCAAAATAGACCAGAAGTAAAAAGTAGGTAAAAGATAATTATTT
CGTTTTATCATCAATAGCTTCAACGAGTCGTCACATCGACACCACCATCA
AAACAATCCAAATCTATCATGAACGTCATCCAATCGTCCACTCAGCAACC
TAACTTCAATTACAGTCCTTCTTCGTATGACGTCGTCCAATCGTTCACTC
AGGAACCTAACGTCAATCACAGTCCCTCGTCTGACTGCATCCAATCGTTC
ACTCAGGAACCTAACGTAAATCACAGTCCTTCTTCGTCTGACGTCATCCA
ATCGTCCACTCAGCAACCTAACGTCAATTACAGTCCTTCTTCGTATGACG
TCATCCAATCGTTCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCT
GACGTCATCCAATCGTTCACTCAGCAACCTAACGTCAATCACATTTCTTC
GCCTGGCGTCATCCAATCGTCCACTCAGGAACCTAACGTCAATCACAGTC
CTTCGTCTGATGTCATCCAATCGTTCACGCATGAACCTAACGTCAATAAC
AGTCCTTCTTCGTCTGACGTCATCCAATCGTTCACTCAGCAACCTAACGT
CAATCACAGTCCTTCGTCTGAC

Coding sequence (CDS) from alignment at sc0000393_pilon:70383..74204-

>XLOC_045643 ID=XLOC_045643|Name=XLOC_045643|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3812bp|location=Sequence derived from alignment at sc0000393_pilon:70383..74204- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGAATCGAACGAAGAAGCAGATACTCCAAAGAAATATAGTAGATCGCT
ATCTCCAAGTGCTTTTAACATTTGTATTTTATGTACAGAAGAGATTCCTT
CAAATCGACGCCATCGCCTGTTCGATGATAAAAATGTTAAAACAGACGCT
TGCAATAAATTGGAGCAGTGTGTATGTATCCAAATCCAACAATCAACAGA
CTTCCGAATCATATGTGAAAATTGTCTGAGGTCTGTCTCAAATATCACTA
AAAAGCAAAACCTAAAAATCGAAGTGTTCCAGGATGGCAGGAAACATGGT
GAACAAAAATTTATAAGAACTAAGATAAAGAGACTGTCAAAAGGAAACAA
AGAACCAAACAGCAGAAAGAAATTGTCAAGTCAATTCGATGGTTTGAAAC
TTGGAGCTAAAAATTCCACTATGAAAATGGAATCGAACGAAGAAGCAGAT
ACTCCAAAGAAATATAGTAGATCGCTATCTCCAAGTGCTTTTAACATTTG
TATTTTATGTACAGAAGAGATTCCTTCAAATCGACGCCATCGCCTGTTCG
ATGATAAAAATGTTAAAACAGACGCTTGCAATAAATTGGAGCAGTGTGTA
TGTATCCAAATCCAACAATCAACAGACTTCCGAATCATATGTGAAAATTG
TCTGAGGTCTGTCTCAAATATCACTAAAAAGCAAAACCTAAAAATCGAAG
TGTTCCAGGATGGCAGGAAACATGGTGAACAAAAATTTATAAGAACTAAG
ATAAAGAGACTGTCAAAAGGAAACAAAGAACCAAACAGCAGAAAGAAATT
GTCAAGTCAATTCGATGGTTTGAAACTTGGAGCTAAAAATTCCACTATGA
AAATGACGGTTACAGACGAAAAAGGCTCTACTGAAGCAGAAATTCACATT
CCAAAGCAGCAACAAAAATTGATCAAACTTGCCATGGCTAACAATAAAAA
ACACCTGTTGAATTATATCCTGACCAGTATAAAACCCGAAGACTGTGAAA
TTGAGAATATTGTCATGAAATTCGTCCAGAAAAAATATCAAACGTGAGAT
TAAACAGATTTGCTCAAATAATAACAAAACAACGACGTTTCGTTGCCATG
ATGTATCACAACTCACAGAACTGTCGTATGATGCTCAGTATCAAGAACTT
CAATCGGTTGCACCTTATACATTTAAATCAATTGTTAGTATCGCAAAGAA
TCCACGTGAAAACAGAAATAAACACAAGAAACTGGAAACATCTATACCGG
CCGTCATGAATGCTGTTAATTCGCTACTGATGTGCAGAAATCGAATGCTA
AACCGTTGCGCCGTTATGAATAGCATTATTCTTAAGAAGGGAAAGGCTGA
CAAACAATGCTTCAATAGATTTAACGCACTGCAGACATGCGTATCATACA
AAGAAACACTATCAAAACAAACAGAGTTGGGCAAGGGTCATAGAAATACA
ATCAAGGAATGGGGAAGGGACATAGTCAAATACAGGCAGGCAACGAAGGA
AGCAGCCAAAGCTCAAATGATGGATGAAGAAAAAGAGTTGGTTCTAACAA
AAGGCGACTGTCCAGTCAATTTGTTCAATGTGGAAAGTAGTTTCCTAGAT
AAAGCAGCTATCATGAAACCAAAATTTCGTCTACTTGAGGATACAATCGA
GGAAGAAATGGAAGTATTTGATACAGAAGAGTCTGACCGAGCAATAGCAG
ATTTGCTGGATGAAGAGGTGCCAGTTCTCCCAGTCGATGTTTCAACACCT
GATACTTCATTCGACTTCGATTTCCAGATGACGGTTACAGACGAAAAAGG
CTCTACTGAAGCAGAAATTCACATTCCAAAGCAGCAACAAAAATTGATCA
AACTTGCCATGGCTAACAATAAAAAACACCTGTTGAATTATATCCTGACC
AGTATAAAACCCGAAGACTGTGAAATTGAGAATATTGTCATGAAATTCGT
CCAGAAAAAATATCAAACGTGAGATTAAACAGATTTGCTCAAATAATAAC
AAAACAACGACGTTTCGTTGCCATGATGTATCACAACTCACAGAACTGTC
GTATGATGCTCAGTATCAAGAACTTCAATCGGTTGCACCTTATACATTTA
AATCAATTGTTAGTATCGCAAAGAATCCACGTGAAAACAGAAATAAACAC
AAGAAACTGGAAACATCTATACCGGCCGTCATGAATGCTGTTAATTCGCT
ACTGATGTGCAGAAATCGAATGCTAAACCGTTGCGCCGTTATGAATAGCA
TTATTCTTAAGAAGGGAAAGGCTGACAAACAATGCTTCAATAGATTTAAC
GCACTGCAGACATGCGTATCATACAAAGAAACACTATCAAAACAAACAGA
GTTGGGCAAGGGTCATAGAAATACAATCAAGGAATGGGGAAGGGACATAG
TCAAATACAGGCAGGCAACGAAGGAAGCAGCCAAAGCTCAAATGATGGAT
GAAGAAAAAGAGTTGGTTCTAACAAAAGGCGACTGTCCAGTCAATTTGTT
CAATGTGGAAAGTAGTTTCCTAGATAAAGCAGCTATCATGAAACCAAAAT
TTCGTCTACTTGAGGATACAATCGAGGAAGAAATGGAAGTATTTGATACA
GAAGAGTCTGACCGAGCAATAGCAGATTTGCTGGATGAAGAGGTGCCAGT
TCTCCCAGTCGATGTTTCAACACCTGATACTTCATTCGACTTCGATTTCC
AGCTTCAACGAGTCGTCACATCGACACCACCATCAAAACAATCCAAATCT
ATCATGAACGTCATCCAATCGTCCACTCAGCAACCTAACTTCAATTACAG
TCCTTCTTCGTATGACGTCGTCCAATCGTTCACTCAGGAACCTAACGTCA
ATCACAGTCCCTCGTCTGACTGCATCCAATCGTTCACTCAGGAACCTAAC
GTAAATCACAGTCCTTCTTCGTCTGACGTCATCCAATCGTCCACTCAGCA
ACCTAACGTCAATTACAGTCCTTCTTCGTATGACGTCATCCAATCGTTCA
CTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGACGTCATCCAATCG
TTCACTCAGCAACCTAACGTCAATCACATTTCTTCGCCTGGCGTCATCCA
ATCGTCCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGATGTCA
TCCAATCGTTCACGCATGAACCTAACGTCAATAACAGTCCTTCTTCGTCT
GACGTCATCCAATCGTTCACTCAGCAACCTAACGTCAATCACAGTCCTTC
GTCTGACCTTCAACGAGTCGTCACATCGACACCACCATCAAAACAATCCA
AATCTATCATGAACGTCATCCAATCGTCCACTCAGCAACCTAACTTCAAT
TACAGTCCTTCTTCGTATGACGTCGTCCAATCGTTCACTCAGGAACCTAA
CGTCAATCACAGTCCCTCGTCTGACTGCATCCAATCGTTCACTCAGGAAC
CTAACGTAAATCACAGTCCTTCTTCGTCTGACGTCATCCAATCGTCCACT
CAGCAACCTAACGTCAATTACAGTCCTTCTTCGTATGACGTCATCCAATC
GTTCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGACGTCATCC
AATCGTTCACTCAGCAACCTAACGTCAATCACATTTCTTCGCCTGGCGTC
ATCCAATCGTCCACTCAGGAACCTAACGTCAATCACAGTCCTTCGTCTGA
TGTCATCCAATCGTTCACGCATGAACCTAACGTCAATAACAGTCCTTCTT
CGTCTGACGTCATCCAATCGTTCACTCAGCAACCTAACGTCAATCACAGT
CCTTCGTCTGAC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045643XLOC_045643-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000393_pilongenomesc0000393_pilon:70383..74204 -
Properties
Property NameValue
Aaloc1351-1905:556
Aaloc604-1350:1634
Aaloc427-603:1812
Aaloc1-426:3823