XLOC_045598 (mRNA) -

Overview
NameXLOC_045598
Unique NameXLOC_045598
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000330_pilon:113593..121574+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045598 ID=XLOC_045598|Name=XLOC_045598|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7982bp|location=Sequence derived from alignment at sc0000330_pilon:113593..121574+ (Clytia hemisphaerica_ch_hm2_pilon)
ctaacaATCAACATGCGACATCACACTATTTCCCGCCATCTCCGCTGCTC CATGCTGTGGGTATCGTATATCGTCAACTTAGTATCAGGGGGGTCAGGGT CAGAATTCAACGGAAATTTGGCCGTTGAAATAGTTGTCTGGCCGGCAGAA ATGCTATCCCGCCGGCGGAAAATTGACAGTCAGAATAGTCATCCGGCCGG CGGAATTAAATGATGGTAACATTTCTCGTCTCGTGGTAACTGTTTGCCCT AAAACAATAGTTATTTCAGAGAACgtgacagtcttttgaataactaatta ctccagcataaatatttttaatgataaCGTCATgtaattgatttttcttt tacaacacagctgttacctagggacaagataatttaacctttttattgTG CTGGCTTAGGAAAAGTATATACAGGAGTAaattgttattcaatagaccgc CGCATTCTCCTAAACAACTATCATTATTGAATTCAGGATTtactaaaatt tatttaaaatcatTGTTTTGCAGCTCTGAAGGAGGTCAATCATTTTACCA TTATTTTGCACCACCTCTTCCAAAGAATGTTATCATGTTTGCAACAAACA ACAATTCAATCCAAGAACAGTTTGAAGTGAGAGTTAGTATTGATCCCAGT GTAGAGGATAAGAAAATCGGCGAATTCTCAAGAGATAAAGATTGTTTTGT ATGGAAAGTTGACTTGACAGAGGAAGAAGTGGATGCAacaaataaagttt taaaaatggtATGGAAGGGTTTTTGTTCAAAGAAAGTCTTATAATTACTC CCTCAAGCAGCTTTAGaagttttataaacaaaaaaggaaCCTTGTACATT CACACAAAATTTTTACGTACTGCTTTTTGTTAACCTGTTTTTGTTGGACT GTAATAAGGGTTTTCAGACAACCTGAACAAGGATCTATATTTCCTCCCAT CTTAGCTTACAAAGTATAGTTACAATAAAAAGTTTGCAATTTCTTCCTTT GATAACTTattaacaatttattttttcttaggaTCGATTACTTAAAATTA GTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCAAGACAAAGAT GAAGAAGATTTAGTTTTTGATAACGACAATGATGATATcacagaatttga aaaaagtttagaaaaatttgaagaCGACTTCAAGGAAAACcaatcagcca tcaaaacacTTCATAAAAAGGTTGCTTCTCTACCAACCAAATCATCAACT AAAAAGAAAGTATCCGATTTCTTCAAACCtaaacaacagaaaaaaaattc tgatttcaaagctaaaacaataaCCAGTAAAGAAACTGTTCTGACAGAAA CTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACAAAAGGGAAAA AGACCACACCCATTTGTCGAGTTAGTACACTCTATATTCTTTTATGTTTC CATTAGACAACAGTCAGTTGACTTGGGTATCAATGAACTGAGAAGAGAGT AGAGAACTCAATATTATCCAAAAGTTACTTTAGGCAtacaaactttcgcg ggcagaaactttcgcgatgtcgaaaaatcgcgaaatgttattcgcgagca taaactttcgcaaatcgttagataaaaatgagaattttcgaataaaaatt gccttaaattgaaaaatattcattaaatCCACTAAAGACGATTGCTCTTC GATTTTAAAATGGCATTAAAGGATAATAATATGCCTAAAATTTGATTTCt attacgatttcgaggttttttgattttaaattttttaagaatatttcgtg agcataaactttcgcgaattgccctgttaataattttcaaagacatttac tttcgcgaaaaaggccaaagttcgcgaaattcgcgaaagtttctgcttgc gaaactttttacgcctaaagtaatgGCGATCTTGACACTTGTCAACATCC ATGAATTATACGTTGTTAATCACGCCTTAATTCATTCAGCTAAGTTTTTG TCTCGACagctcaaatttaaaaagtgtaaTTATTTCACTAAAGACTGGTC TTAATGATGATTTGTTCTAGCTCCCCTGAATCTAAACCAAAGAAAGCAAT GATGCAAGCCAAACCTTCCAAAACACCAGAGATGGCTAAGAGAAGAGTCA TAAGGAAATCTGGGAAGTCACCAGCAGCTAAATTTTCTGATCTCATTTCT CATGAAAGTAAGCATTTGAGAAATTGCAattattgtttttgttgttaact ggttgttgttttttttatgcgGTCTGTACGAGAtttttttAAGCAATGGA ATTGGATCTTTTCGCACGAGGACAGGCTTACACAGCCTGTCTGACAAAAA ATCGACAGGAAAATGACACTTTCAAATTTCTGCTTGATTGATTTAAAGAA GTTATTACATGTGCGTCAAAAGAAGGTATTGCATTGTCTTTAAATTGTCG ACTTTCTGTCGTCTTTTGTCTAAAATAAGGGAAGACTaaaaaatgctttc aaaatCTTGTATTCAACCTTACAGATCCTACAGGACGGTGGGGTCATGGA TGCTGCAAGATTTGTCATGATAAAGCAATAGTCATTGGTGGTCAAACCAA ACAACAGATGAATACTGATTCTATGTGGCTTCTTGACTTGAGTAAGTAGC ATGAAgcaataattcaaaatattgttgtggATCAATAgattattgtattt ttttgcttgcCTTGATTCATCCCTGAGGTGATTTATTACCATGACAATTT CGTTTCCTCTTCTAAATTCCCTCGATTAGATAAGGCTGTAACAATAACAA AGGTGCTTGAATTTGACTGaaaaaagcaattataaaaaattaaaagttct tTTGGGGTTTTAATTATTTAAGTCAGGAGATAATATTATAAAGAAGTGGT ATTTTATATTCATTATAGCCTTGTTTTTCACCGATAGACACatcaaaatc tctaaaaatcGAGTAGTCTTCTATTTAAAACCTTTTCAGAAACCCGAAAA TGGGAGTTACAAAAGTCCGATAATTCTACAATTGATCGTCGTGTCGGACA TAGTGTCGTATATGACGAAAAAAGAAACCTCGTTTTTGTTTATGGTGGAT CAAAACCGAAGAAATGGTATAGTGATGTTTATGCACTGAATCTTGCCACT TTCGAATGGGAAAAATCAGAGGTATATCTCTTTTTGATTCGAATCTATTA TCAAAAGACATAAtcctgaaaatttgaagtcattttgttaaaaataaatc aaaggatatttcactttcattttcggtCAGAGTGTGCAAACAGTACTTTT AAAAATCgttttgtgtgaaaacaaaatagttttttatttgaaattttcac aggtTTGCTTACGCACATTTCTACGTCACAAATATCAATTTCGTAATTTT TCTAGAGATTTAATGTAGGTACTATTATATTTCTAGACCATTGGTAAAGC CCCAACAAGAGCTTATCACTCATGCAACAAATTTCACGACGAACTTTTTG TATTTGGGGGTGTTTACCCAAACCCTGACCCTGACCCTGATGGTTGCAGC AATGAACTCGTCATTTATGATATTGGtatgtttttatatttcattaATAC AAATTCATCATGTTTTCTGTTGTCATTCCCAaggaaaataaaagataaaa gaggctCTTCTATTGAGCCAAGGGCGGGTATTTTAAGGTATCCTCAGAAC ATTTATATCGTGTACATCCTTAAAGTTTTTCGAGATAATTCGCAGAATAc ggacaaataaaaaaaaccgtgTGTCTGATTTTCAATCACTTCTTGTTTCT TACATTTTCCTCCGAAAATTCACAAACtattttccacaaaaattttcttc ttgaCATTTCAGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGAT ATTCCGAATCCTCGATCGGGGTAAGTTCCTCACTCTAGATTTGACAACAT CTCGTCGATCTTTTAATAACACTCCTGTACTGGTAAGAATGGAATTGTCT TTCATATGTGGGAATTCAGATTCTACCGTGGCTGATCTGGTATTTCGAGG TTTTTGGTTATTTTGCTTTCGGCAGCCGCCTTTTTAAGAGGCGACCGCCA GTTTTAATCCGCGGCCGCCTTTTACAAAGAGCGGCTGCCTATAATACTGG CGGCCGCCTTTTATGATAAGCGGCCACCTTTTTCCTTCGAAGAAGGAGGC CGCCCTTTATtacgatggcccctaaggctcaccacgcacttccagttctt ataaaatttgtgaactagaactgtctagggtcatggcccagaaggctcac aagacactgcgcacttccgagtttttttGTGACGACATTGcacacttcta aaaatattttagaaacgTAAAAGTCCCCCTCGAAAGATAGCcgttctggt cagcaaaatagataccgAGTTGTAATAAGTGAGTTGATGATAATAGCGAA GAGGCTCGgaaatcccgagttattttCTTGAGTTCAAAAGCCGAGTTAGT TAcgaaaaaccgagttatgacgttatttttcggaaatttcGACGTCATTT TGTACCTTCTATATGACGTCATTCTCAATTCTGTAGCTCGttttttttCC TTGCctttaaaatttcgagttatctCTGATGGTATCTAAACTCAAGTAAG TCCtgcctttaaattttcgagtcatttctcgttttttaactcggttttgt ttcttttaaattttcgagttattttccttcctgTACATTCTCGGATTCTC GAATTATTTTCACAGCAGAAGGCTcaaaacacacacacacacacacactt cTAGTTTTCATGCACTTAGGGTGGTCCTATGGCGGAAAATACCAGCGGCG TGGaggcaaaaaaacaaagttgatatttgcTCACTTTTTGCTTCCCAGAT TTTTGCCACTGGGGGGAATTTTGCAGACCAGGACTTAACTCAGAAATTTT AACctgtaactcttgatatgagcaactcggaaattttaactcattttgcg taactcgacattcattttatagaccaaaaaaaaaattgatcgcgcgggcc gctcgcttggaaatttcccgccctgacaaaaagtcagaagtgcgcagtgt cacttgagccttctgggccattgaccctaggcagttctagttcacaaatt ttataagaactggaagtgcgtaaaaactagaagtgcgtgttttgagcctt ctgggccatcgtaCTTTATAACTGGCGCCCACTCTTTATAACAGGCGGCC GCCCTTTAAAAACGCGGCCGCTATTTATAAAGGGTGGCCACGTTTTTTAA AAGGCGGCCGCTTCTTTTACCGCCTTTTTCATAATCTGGTCTGTGAAATA CAAGAGTCGTCAAAGTTAATCGCGTGGTAAGGATAGGATTAGAGTGTAaa tatatatacacagtataatataatatacaatatacaGTACTGTACAGTAC TGTAATCGAGATAATGTTTTTAGAGCCGAACATCAACTTGGGTGTGATTG ACCTGGTCAAATCCTTCTCACCACACTCACCACATACATAAAATCACATG GGTAGCTACcatgtttgtttatgtttagCCAATACATTTCACAGACCAGA TTATGAAAAACGCGGTAAAAAACGCGGCCACCTTTTATAAAACGTGGCCG CCCTTTATAACTGACGGCCGTCCTTTATAAATAGCGGCCGCGTTTTTAAA GGGCGGCCGCCTGTTATAAAGAGTGGCCGCctttttcgaaggaaaagggt GGCCGCTTATTATAAAAGGCGGCCGCCAGTATTATAGGCGGTCGCTCTTT GTAAAAGGCGGCCGCGGATTATAACTGGCGGCCGCCTCTTAAAAAGGCGG CCGCCAAAAGCAAAATAACTAAAAACTTCGAAATACCAGATCAGCCACGG TAAGATTCTATTGCTTACCCAAAAGATTCAGTTGGGATTCTCAAAGCTTT AGGGTCAGTGAAGAGTAGCTTTCTAATGAAAGAGGGAGATGGAATTTCAG GGTGTTTCTTAACGCCTGGGATTATTTCTTGAACTGTCCTGAACAGTAAT TTTTCCGATAGGTAAATGTAAATGGTTCTGTGACATAGGGGTGTTGAATA TTTTGGAGAATTATTTGCTGAATCTAAAAATGCTTTTTGGCATTAGCTGC TTTTCAGTCGTTTATTCATCTatccaacgatgtaaaaataatagataacc aacttgccttgattctcaaaaaacatccgtgtacggttgtaaaaatatta atgacattttgcatcgtaaaaagtgcaattaaataaaaatttgcttcatt tgcaaccttctattggacagaatcgatcacgtgatgtatatttttccaaa atttgggttagaaaaagtgtattttcctataggcagcctcacagaaggaa ttttttaattagatattattgttctataaacattcatctgtttattttgt atcaggcaaccttcatgcacttttcattcgtgagatatcgcatttcaaat cacacatatatttttcagataacagcattttatgagcgtttatttatcca gatgaagattaagtggtatcaggccgatctgTAGTCcttttgtctaaaga ttggtacctttatcttttgaaaaaaaATCAAAAATTTGCAGTAAATAACA ATTCAAATTTTCTATCAATTCAGTGTATGTCAAAAAGTGTGTCAAAATCT AGCTAAAAGCATAACACGCACTGCACACAgagctttttaatagagtgctc atttcaataggaaaacaatggttgttctcttgagagaagtgccttctaga ggtagttggttatctattatttttacatcgttgatctATCTTTGTAGTCA TTCAGCAGTGATGATTGGTTCCAAATTGTACATTTTCGGTGGCTGGGATG CGCCGACCTGTCATGATGATATCTATTGTCTCGATATAGGTAAATTACAA CATTTGTATATCCTTTCAACTCGTATCATTGTTTTCCTTCGGAGACAAAT TTCCATTCATTTTCACCGCCTATGGAATAACAATAGGATCCCAAAAGAAA ATCATCTCAACTGAAAAGACAACTAAATAAACTTGTCTTAAACTTGTTGG CTATCGAAAAAGAtcttcaattcatgatatgcaccactgcaatgacttca cgaaattatgcaacttttctgtttttgttccacccaatacgtcacttttt ctattcttAAAGTGACATATTGGATGGAAAAtcttaaaagttctcagaag actcttcAGTGGTGCAAATCATGAATATTTTAATAGAGTAGATATTCAAT ACTTTTATGCAATAAGTTCCATATTTTAATGCAAGATCATTTTAAAGCCA AGTATTTCTTCCCAGCGACGACTTTACTAAACAACCACTTTAGTTTGGTC AAATTTAATCGTTTTAACTTTAACTTTCTCTTCATAGTCATAATGAAGTA TACGAGATTGAAACCTATTGGTGAAGGTCCGTCTGCCCGTACTTGGCATT CCACCTCTGTTCTATCAAATCCAAATCAATTTTGTATTTATGGTGGCTTC GATGGCAACGACAGTTTGAATGATCTTTTTGTTTTCGATTCAGGTAAACC GGTGCCaaaaaaaGGCTAggaaattgagcttttttttgaCAGGAACTCGT CtttttttACAAGGGAAAACACGTACTCAGGACTCGGGGTTCTGAGGCTG TTTGACTTTAGTCTTCTTTACCTGACTATACCAAATTtattttgtgttat tttgttttgagattACTTCTTTTCTTCTGTTTTAGTCAAAACGTGTTGGA GCAAGATACATAACGAGCATAATTCCATTTTACGTGCTGGTCATACATCA CTGTTGATGACGTCACCATATAgtgatgatgacgtcacaaaagcCAACAA CAAAAGTCAGGTGTTAATTTTCGGAGGCGGTGATAACGCCGGACAATTTT ATAACGATGTCATTCTACTGGATGTGAAATAG

Coding sequence (CDS) from alignment at sc0000330_pilon:113593..121574+

>XLOC_045598 ID=XLOC_045598|Name=XLOC_045598|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3516bp|location=Sequence derived from alignment at sc0000330_pilon:113593..121574+ (Clytia hemisphaerica_ch_hm2_pilon)
ctaacaATCAACATGCGACATCACACTATTTCCCGCCATCTCCGCTGCTC
CATGCTctaacaATCAACATGCGACATCACACTATTTCCCGCCATCTCCG
CTGCTCCATGCTCTCTGAAGGAGGTCAATCATTTTACCATTATTTTGCAC
CACCTCTTCCAAAGAATGTTATCATGTTTGCAACAAACAACAATTCAATC
CAAGAACAGTTTGAAGTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAA
GAAAATCGGCGAATTCTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTG
ACTTGACAGAGGAAGAAGTGGATGCAacaaataaagttttaaaaatgCTC
TGAAGGAGGTCAATCATTTTACCATTATTTTGCACCACCTCTTCCAAAGA
ATGTTATCATGTTTGCAACAAACAACAATTCAATCCAAGAACAGTTTGAA
GTGAGAGTTAGTATTGATCCCAGTGTAGAGGATAAGAAAATCGGCGAATT
CTCAAGAGATAAAGATTGTTTTGTATGGAAAGTTGACTTGACAGAGGAAG
AAGTGGATGCAacaaataaagttttaaaaatggaTCGATTACTTAAAATT
AGTGTGACCAAACAAGGAGCTGATGAAGGATTCTCTTCTCAAGACAAAGA
TGAAGAAGATTTAGTTTTTGATAACGACAATGATGATATcacagaatttg
aaaaaagtttagaaaaatttgaagaCGACTTCAAGGAAAACcaatcagcc
atcaaaacacTTCATAAAAAGGTTGCTTCTCTACCAACCAAATCATCAAC
TAAAAAGAAAGTATCCGATTTCTTCAAACCtaaacaacagaaaaaaaatt
ctgatttcaaagctaaaacaataaCCAGTAAAGAAACTGTTCTGACAGAA
ACTAAAGATAAAGTCAATGACTCTGATGGTGATAAAGAACAAAAGGGAAA
AAGACCACACCCATTTGTCGAgaTCGATTACTTAAAATTAGTGTGACCAA
ACAAGGAGCTGATGAAGGATTCTCTTCTCAAGACAAAGATGAAGAAGATT
TAGTTTTTGATAACGACAATGATGATATcacagaatttgaaaaaagttta
gaaaaatttgaagaCGACTTCAAGGAAAACcaatcagccatcaaaacacT
TCATAAAAAGGTTGCTTCTCTACCAACCAAATCATCAACTAAAAAGAAAG
TATCCGATTTCTTCAAACCtaaacaacagaaaaaaaattctgatttcaaa
gctaaaacaataaCCAGTAAAGAAACTGTTCTGACAGAAACTAAAGATAA
AGTCAATGACTCTGATGGTGATAAAGAACAAAAGGGAAAAAGACCACACC
CATTTGTCGACTCCCCTGAATCTAAACCAAAGAAAGCAATGATGCAAGCC
AAACCTTCCAAAACACCAGAGATGGCTAAGAGAAGAGTCATAAGGAAATC
TGGGAAGTCACCAGCAGCTAAATTTTCTGATCTCATTTCTCATGAAACTC
CCCTGAATCTAAACCAAAGAAAGCAATGATGCAAGCCAAACCTTCCAAAA
CACCAGAGATGGCTAAGAGAAGAGTCATAAGGAAATCTGGGAAGTCACCA
GCAGCTAAATTTTCTGATCTCATTTCTCATGAAAATCCTACAGGACGGTG
GGGTCATGGATGCTGCAAGATTTGTCATGATAAAGCAATAGTCATTGGTG
GTCAAACCAAACAACAGATGAATACTGATTCTATGTGGCTTCTTGACTTG
AATCCTACAGGACGGTGGGGTCATGGATGCTGCAAGATTTGTCATGATAA
AGCAATAGTCATTGGTGGTCAAACCAAACAACAGATGAATACTGATTCTA
TGTGGCTTCTTGACTTGAAAACCCGAAAATGGGAGTTACAAAAGTCCGAT
AATTCTACAATTGATCGTCGTGTCGGACATAGTGTCGTATATGACGAAAA
AAGAAACCTCGTTTTTGTTTATGGTGGATCAAAACCGAAGAAATGGTATA
GTGATGTTTATGCACTGAATCTTGCCACTTTCGAATGGGAAAAATCAGAG
AAACCCGAAAATGGGAGTTACAAAAGTCCGATAATTCTACAATTGATCGT
CGTGTCGGACATAGTGTCGTATATGACGAAAAAAGAAACCTCGTTTTTGT
TTATGGTGGATCAAAACCGAAGAAATGGTATAGTGATGTTTATGCACTGA
ATCTTGCCACTTTCGAATGGGAAAAATCAGAGACCATTGGTAAAGCCCCA
ACAAGAGCTTATCACTCATGCAACAAATTTCACGACGAACTTTTTGTATT
TGGGGGTGTTTACCCAAACCCTGACCCTGACCCTGATGGTTGCAGCAATG
AACTCGTCATTTATGATATTGACCATTGGTAAAGCCCCAACAAGAGCTTA
TCACTCATGCAACAAATTTCACGACGAACTTTTTGTATTTGGGGGTGTTT
ACCCAAACCCTGACCCTGACCCTGATGGTTGCAGCAATGAACTCGTCATT
TATGATATTGCAAATAAAAGTTGGTACACACCTATCATTAGCGGTGATAT
TCCGAATCCTCGATCGGGCAAATAAAAGTTGGTACACACCTATCATTAGC
GGTGATATTCCGAATCCTCGATCGGGTCATTCAGCAGTGATGATTGGTTC
CAAATTGTACATTTTCGGTGGCTGGGATGCGCCGACCTGTCATGATGATA
TCTATTGTCTCGATATAGTCATTCAGCAGTGATGATTGGTTCCAAATTGT
ACATTTTCGGTGGCTGGGATGCGCCGACCTGTCATGATGATATCTATTGT
CTCGATATAGTCATAATGAAGTATACGAGATTGAAACCTATTGGTGAAGG
TCCGTCTGCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATCCAAATC
AATTTTGTATTTATGGTGGCTTCGATGGCAACGACAGTTTGAATGATCTT
TTTGTTTTCGATTCAGTCATAATGAAGTATACGAGATTGAAACCTATTGG
TGAAGGTCCGTCTGCCCGTACTTGGCATTCCACCTCTGTTCTATCAAATC
CAAATCAATTTTGTATTTATGGTGGCTTCGATGGCAACGACAGTTTGAAT
GATCTTTTTGTTTTCGATTCAGTCAAAACGTGTTGGAGCAAGATACATAA
CGAGCATAATTCCATTTTACGTGCTGGTCATACATCACTGTTGATGACGT
CACCATATAgtgatgatgacgtcacaaaagcCAACAACAAAAGTCAGGTG
TTAATTTTCGGAGGCGGTGATAACGCCGGACAATTTTATAACGATGTCAT
TCTACTGGATGTGAAATAGTCAAAACGTGTTGGAGCAAGATACATAACGA
GCATAATTCCATTTTACGTGCTGGTCATACATCACTGTTGATGACGTCAC
CATATAgtgatgatgacgtcacaaaagcCAACAACAAAAGTCAGGTGTTA
ATTTTCGGAGGCGGTGATAACGCCGGACAATTTTATAACGATGTCATTCT
ACTGGATGTGAAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045598XLOC_045598-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000330_pilongenomesc0000330_pilon:113593..121574 +
Properties
Property NameValue
Aaloc1564-1758:7788
Aaloc1408-1560:7440
Aaloc1315-1404:6849
Aaloc1258-1311:3865
Aaloc1117-1254:3437
Aaloc937-1116:2992
Aaloc820-933:2527
Aaloc682-816:2072
Aaloc292-678:1032
Aaloc58-291:525
Aaloc1-54:1