XLOC_045585 (mRNA) -

Overview
NameXLOC_045585
Unique NameXLOC_045585
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000330_pilon:204440..210050-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045585 ID=XLOC_045585|Name=XLOC_045585|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5611bp|location=Sequence derived from alignment at sc0000330_pilon:204440..210050- (Clytia hemisphaerica_ch_hm2_pilon)
CAACGTTTCATTTGGCCGAAGAAAAAGTATCGTGTATGTGGAGTTTGTGA GCTTTTTGAGATTATCTCAGTGTTTAAGTTTTTTGGGCCAAGGTATAAGT TTCAAGTGGAGCAGAAAACCGTTCAACCAATTTGAGACATTAGATGATTG ACTATAAGTTCCTGATGTTATTCGAGATCTTTATATCTAAGGAGAAAAAA ATAATGCGGTAGTAATTCGTTTTTGACGTTTTATCAGGGTTGCCACGTCT GTCAGAAATGTCTGGAATTAGGTAAAAGTCTGCAAATGTTTGGAAAAAGT CTAAAATTGGTATACTTGTTTAGAAAAGTCTGGAATTAATGTACATAGTT AACTTTCTGGAGATAGGAAACTTTCATTCTGTCAGCATTTGAAATTTCCA AAAACTGGCCTTTCAAATCACCATTAAAGAAAAACTAAAAACCTTCCGAA TTGATAAAATGTTTGGGTAATATTGGGTATTTTACCAAAATATCTGAAAC ATTTTTGACATTTTCATATAAAATATCTTGAAATATGTGGCTTTTGAGAC TAAAAGTCTGGAATTTCAACTAGGCAAACCTGTAGCAACCTGTTAAAACT ATTTGACATCAAAAAAGTAAAACATATAGATAAAAATTGAGGGAAAAATA TTGAGTACTTATTTTGGAATCCTTATAATTTAGAGACTGTGTGGACGGTG TGTTTAAAAATCTTTACCGGACGTCTCCGAGAATAATTTATACATTGATG ACGTCACAAGCAAAAGTGAAGAATTGATTTTGCAGAATTATAAAGTTTTA TATACCATTTAATGCATTTTTAGATCACATCAGTCCAAATGAATAAAAAT TTGAATATGAAAAATGACGTCATTTTTGAAGAATTTTAAAAGAATCACAA TCTTAATTTTATTGAGTTAGTCGAGTCGAGCTTTCGAATGGTATAAATCG TTTTTCGTTTTGACGACGTTCAAATTTGACATTTTCAGGTTACCTCTAAC CCCCTAAAGAGTTTAGTCATAGCTCTTGAAATCTAGAAGAGCTATGGACC TTTATAACTTTTCATATTCAAATCTTTACTCACTGAGACTGATGTGATTT GGAATCTACTTGCCATGTGCTGAAATCAAATTTTAAGTGGTGGTGACGTC ATCAGCTGACAAAACATTACCGGACGTGTCAGTTGAATATTTTGTCGGAC GCCGACTAAAATATTTAAGATCAGATGATATACAGGAATGCAAGAAAAAC CAACTCAGTATTTGTTCCAAACTCATCCAAATTTTAGAAATCATCAGCTG CCTGTCTGAAAAACGAGCCACTTTTTATAACCATTTGTGAAATAATTTGT GAGCCAGAGGCGTGTACAAATATCAAAAGGGTTAAAGGCTTGTTTTAATG ATATACATAGAAAATTCTGGTCTTAAAAGGTGAATTTGTTATCAAATCCG AAGAAAAAAATATATTGAAGATATTCTACTAACCTTCAAAGGCCAATCTA CCTTATTGAAAAATAAACGAGATAAGTCAAGAACTAATATCGCCTACAAA AAATGAATTGAATTTCGTGCTTAGTTTTTAGATTACTAAACTATTTTTCC CTCTCTAACTCTTCATAACAAGAGCACCTTATTGATCTTTCAAGAAAGGG AAGATTTTTTCTCCAATCAAATCTTGTTTCAAGACCCAAGAATCAGAAAA ATAATCCTCTAATCTTTCTTCGATTTTAACTTTTCAAAATATTTTTATCG AAAAGTTTGTTTTCTCCTCGTGTGAAGAAAGAGTTTCGGACTACCCTCCA GTTAGATGACTAAAGACATTGTCGAAATTATTTTACGGCCCCATTTTGAC GTTGTCAAACAATATGACGCTTTATAGCAATGTTTTTCATGGAGATCATA ACTTTCGTATAACATTTTTGTTTATTATTTCCCTTCAGAGCATCAAGAAT ATGCAAGTGACGCGGATCAAAGTTCGCGAGTTGTGTCTTCTGTTGTGCCT TCTTTCGCTATGTCTAATTATGGTGGTGCGTTATCGAGCTCCTGAGGATA AAAAACAGATCCGAAAGAAGAGAGCGCAACATGTTATTCCACAAGATAAA CCTGTTCCTCCTCGTTATTCAGGAAAGTTGAACTCGCCGGGCGATCTATT GATAGACTTAGAGAGGAAAATACTTTTGAAAAATGAAGTTTCGAATGCAA TTTCGGACAGGGAGGCTGAGAACGAGAAACGGATGTCACAACTAGAGAGT AAATTATTTCAACGTTTGAATATCATTGAAAGCAAAGTAAACCGAAACGA AGATCTACTTCTTGAAATTGATCGATTGTTGAAAACGAAATCGAAAGTAA ACGAACCAAAACCACCGGCAACAAAGATCAAACTCCAAACAAGAGATTTT TCTATCATGTACGAAATTCATAAAAAGGTTTGGAACAAATTGACTGAAAG TGAAATCAAAGAATTTTACAACCGTGAAAGAATATCACATTTGAAATATA ACAAGCGCATTTTAGATATTGAAAGGGATCGACATTTATTGATGGAGCTA TTTCCAGGACCCGACGAGTCGCGAGACCGAGTCACCGATCAACTTATGGT CAAAATTAAAGTTAACACAACTAAAACCATTTTCGTCAGTGGTTCTAATG TGAATAATCAAAAGAAGTTCCAAGCAGACCAGTGCAACGTTGATAAATGT TTTATAACAAGTAATCCCAAATATGCTTCGGTCGCAGACGCTCTTTATGT TGAACATAAAATGCCATATCGATTTTTAAGAGAAAAGAATATTAATAAGA ATCGGGTCAATATGGTTTTCCAGTTAGAATCTTCAAGAAATTACCCATCT ATATCTATCTTACCCGATGGATTGAACTGGACAGCTTCTTATCGCGTCGA TAGCGTTCTGTACGCTCCTTATGAACGTTTCACGTCATTTCTAAATGTGA CTGAGCTACCCACCAAACCTAAAGAGAATTATGCCAAAGGTAAAACAAAG ATGGCGGCTTGGTATGTTTCGAACTGTGGAGCAGCAAGTGGTCGTAAAAA TTACGTCAAAGAACTACAGAAATATATTTCAGTGGATATTTACGGACGCT GTGGTAAACCGTGTCCGAAAAATAACAAAAAATGCTATGACCAATTGAAC AATGATTACAAATTTTATTTGGCCTTCGAAAATTCAAATTGTAAAGACTA TTTCACTGAGAAAGTCTATTGGAACGGACTTTTGTAAGTTCAAATTTTTC GTTTTCTGTGTCGTGATACTTTAGGTGTCTGGTAAACAAGGTCATTGTGG TTGAGGGCCAGGCCTTTCTTTCTTACAAATAAAAAATTAATGCCGGTACT GCATTGTACATTAAGGGAAGAAATTTCGGCGGGAAATTAATTTGGCGGAT GGTGGAAAAAAGTAAATTTGGCGAGAAATTATTGTCGGATTTTGGCCAAA TCCACCAAATCCGCCAAATTTTCTTTTCGCCGAATTACCTCTTTGGTAAA GTCCTTAATTAAATTTTAATTATCTTAAATTTTAAATTTTAATTAATGAA GGGAGTGGTCACAAAGTATCTACTAGGGGGGGTTTGGGCTGGAGGATTTC AGTTGGGGTTCGAAATTATTTTTGAGGGTTTAGGGGGGGGGTTCCAGAAA AAAATCCTCAATGGGAAAGGGGGGTGCGAAATATTTTTGGGCAACTTAGG AGGTCAAATTCCATGACATTATTCGTATTTCGTATTATCGTTAATTCTGT CTTCATGAAATATCATTGTGATAGCCTCACCATTTCGCGATTTCTATAAT ATAAGACTAAGAAAGGTAGTTTGTTAAGGGATCCCCCCCTCATACAATTT CACATGTCAGCATAGTCTAGTCGTTTTAAAAAGAGCTGAAAATACAGTGC TTTTAGCGAACAAAGTGGTCGAAAATTGCAATTTTTCTCCTGTCGTCGCA AACCATGGTTGCGCCTCCCGGGGGGGGGGGGGGGCAGCCAGGCAAATTGA CCGACGGGTATGTGCGGCGGCTAAGGGTCTATTTTTCAAGATAGCAGAAA TGCACTGTAAGGGTAGACTTTTTGTTATATGCACTGTAAGGGTGGAAATT TTAGTAAATCAAGGAAAAATTAAGATTTTTTGCCCAAAAAGTCTGATTTT TTTGCTCTAAAAGGGTTGAAAATTTGAAGAAAATGCACTGTAAGGGTATG AATTTGACGGAATTTCGCCGACTTTTTGCTGCACTGTAAGGGTGCGATTT TAAAAGCCAATTTTTTCGCCGCACATACCGTCAGTTGGCAAACCCAGTGC CCCCCCCCCCGGGTTGCGCCTTCTTAATCTTTGATATTACTCCTGTTATA TTAAGATATTGTATATGTAAAGAAATAATCTTTACTTTTAAATTCCATAT GATTCAGACAAAAGCCTCATTTCTGGAAGAATCAGTCCAAAAAAGAGCTA TGTTTGAGGCATATCAGGAGTCCAGAATCAACATTTCCTTCTGTCGGCGC AAACCATGGTTGTGCCTCCTTAATCTTTGATAATATTATTACCTTTAAAC GCAACTCAAAATATTACTCCTATAGTAGTAAGATATTGTATATGCAAAGA AAAATGTTACATATGATTCAGACATTGAAAGACTCATTTCTGGGCAAAAT TAATCTCGTCGGCGCAAACCATGGTTGCGCCTCTTTCGTCACTAAATTCT TTGCCCCTGCACGTTTTAACTTGCTGCCTTTATAATAATGTAGTCCTCCC CACATGAGTGCACAACATTTTGATATTGAGGCTTATAGGGTTACTCACAG TCTGGAAATTTACTGTAGTCAAACCCGATTTTATATGTGGCAAGTCGCCC TTATCCAAAAGTAAGTATAAGTAAGTATAACCCTCACCTTATTAATCAGT CAGTTAGAGTGAAGAAGAAAAATTTAGCAGGGGGGGGTGCGAAATTTTTT TAACCTTTTCGAAAAACAGGTTAAGGGTGCGGGTGTGAATTTTTTTTTGG GATTTTTTGAAATATCCTCAACTCCCCCCCTAGTAGATACTTTCTGACCA CTCCCTAACTCATTCTTTCTTAGCTGTTTCATACAGGGTTGTATTGTTTA AATCTATTAAGATTTGTTACTTTTCTTGTAATTTGGCGATGTCAAGGAGT GTTCCAGATGATAGCTCTGAAATAAATCCCTCTGATAATTTCTTTTCTTT CATAGTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGAAGAATA CAAACGCATTGTCCCTCCACACAGTTACATTCACACTGACCAATTCGCAT CACCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGAC TTATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACAC CAAATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCTCATTTCC CAATGTGGTATAGCGACGCAAACAAGTGGTGGAGGAGTAAAGACAATTGT GTTGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTAA CAAACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAGA GATACGGCTGA

Coding sequence (CDS) from alignment at sc0000330_pilon:204440..210050-

>XLOC_045585 ID=XLOC_045585|Name=XLOC_045585|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3468bp|location=Sequence derived from alignment at sc0000330_pilon:204440..210050- (Clytia hemisphaerica_ch_hm2_pilon)
CAACGTTTCATTTGGCCGAAGAAAAAGTATCGTCAACGTTTCATTTGGCC
GAAGAAAAAGTATCGTAGCATCAAGAATATGCAAGTGACGCGGATCAAAG
TTCGCGAGTTGTGTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATG
GTGGTGCGTTATCGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAG
AGCGCAACATGTTATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAG
GAAAGTTGAACTCGCCGGGCGATCTATTGATAGACTTAGAGAGGAAAATA
CTTTTGAAAAATGAAGTTTCGAATGCAATTTCGGACAGGGAGGCTGAGAA
CGAGAAACGGATGTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATA
TCATTGAAAGCAAAGTAAACCGAAACGAAGATCTACTTCTTGAAATTGAT
CGATTGTTGAAAACGAAATCGAAAGTAAACGAACCAAAACCACCGGCAAC
AAAGATCAAACTCCAAACAAGAGATTTTTCTATCATGTACGAAATTCATA
AAAAGGTTTGGAACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAAC
CGTGAAAGAATATCACATTTGAAATATAACAAGCGCATTTTAGATATTGA
AAGGGATCGACATTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGC
GAGACCGAGTCACCGATCAACTTATGGTCAAAATTAAAGTTAACACAACT
AAAACCATTTTCGTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCA
AGCAGACCAGTGCAACGTTGATAAATGTTTTATAACAAGTAATCCCAAAT
ATGCTTCGGTCGCAGACGCTCTTTATGTTGAACATAAAATGCCATATCGA
TTTTTAAGAGAAAAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCA
GTTAGAATCTTCAAGAAATTACCCATCTATATCTATCTTACCCGATGGAT
TGAACTGGACAGCTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTAT
GAACGTTTCACGTCATTTCTAAATGTGACTGAGCTACCCACCAAACCTAA
AGAGAATTATGCCAAAGGTAAAACAAAGATGGCGGCTTGGTATGTTTCGA
ACTGTGGAGCAGCAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAA
TATATTTCAGTGGATATTTACGGACGCTGTGGTAAACCGTGTCCGAAAAA
TAACAAAAAATGCTATGACCAATTGAACAATGATTACAAATTTTATTTGG
CCTTCGAAAATTCAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGG
AACGGACTTTTAGCATCAAGAATATGCAAGTGACGCGGATCAAAGTTCGC
GAGTTGTGTCTTCTGTTGTGCCTTCTTTCGCTATGTCTAATTATGGTGGT
GCGTTATCGAGCTCCTGAGGATAAAAAACAGATCCGAAAGAAGAGAGCGC
AACATGTTATTCCACAAGATAAACCTGTTCCTCCTCGTTATTCAGGAAAG
TTGAACTCGCCGGGCGATCTATTGATAGACTTAGAGAGGAAAATACTTTT
GAAAAATGAAGTTTCGAATGCAATTTCGGACAGGGAGGCTGAGAACGAGA
AACGGATGTCACAACTAGAGAGTAAATTATTTCAACGTTTGAATATCATT
GAAAGCAAAGTAAACCGAAACGAAGATCTACTTCTTGAAATTGATCGATT
GTTGAAAACGAAATCGAAAGTAAACGAACCAAAACCACCGGCAACAAAGA
TCAAACTCCAAACAAGAGATTTTTCTATCATGTACGAAATTCATAAAAAG
GTTTGGAACAAATTGACTGAAAGTGAAATCAAAGAATTTTACAACCGTGA
AAGAATATCACATTTGAAATATAACAAGCGCATTTTAGATATTGAAAGGG
ATCGACATTTATTGATGGAGCTATTTCCAGGACCCGACGAGTCGCGAGAC
CGAGTCACCGATCAACTTATGGTCAAAATTAAAGTTAACACAACTAAAAC
CATTTTCGTCAGTGGTTCTAATGTGAATAATCAAAAGAAGTTCCAAGCAG
ACCAGTGCAACGTTGATAAATGTTTTATAACAAGTAATCCCAAATATGCT
TCGGTCGCAGACGCTCTTTATGTTGAACATAAAATGCCATATCGATTTTT
AAGAGAAAAGAATATTAATAAGAATCGGGTCAATATGGTTTTCCAGTTAG
AATCTTCAAGAAATTACCCATCTATATCTATCTTACCCGATGGATTGAAC
TGGACAGCTTCTTATCGCGTCGATAGCGTTCTGTACGCTCCTTATGAACG
TTTCACGTCATTTCTAAATGTGACTGAGCTACCCACCAAACCTAAAGAGA
ATTATGCCAAAGGTAAAACAAAGATGGCGGCTTGGTATGTTTCGAACTGT
GGAGCAGCAAGTGGTCGTAAAAATTACGTCAAAGAACTACAGAAATATAT
TTCAGTGGATATTTACGGACGCTGTGGTAAACCGTGTCCGAAAAATAACA
AAAAATGCTATGACCAATTGAACAATGATTACAAATTTTATTTGGCCTTC
GAAAATTCAAATTGTAAAGACTATTTCACTGAGAAAGTCTATTGGAACGG
ACTTTTTTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTGAAGAAT
ACAAACGCATTGTCCCTCCACACAGTTACATTCACACTGACCAATTCGCA
TCACCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACATGATGA
CTTATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCATCAACA
CCAAATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCTCATTTC
CCAATGTGGTATAGCGACGCAAACAAGTGGTGGAGGAGTAAAGACAATTG
TGTTGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGTGGCGTA
ACAAACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGGTACAAG
AGATACGGCTGATTATCGTATTATCCCAGTTGTGTTTGGAGCTCATCCTG
AAGAATACAAACGCATTGTCCCTCCACACAGTTACATTCACACTGACCAA
TTCGCATCACCAAAAGAACTGGCGGAATATCTCATCTTTTTAGATCAACA
TGATGACTTATATAATCAATACTTTTTGTGGAAAGACACTGGTAGCTTCA
TCAACACCAAATTCATGTGCCGTATGTGCACCATGGTCCACCTGGCTCCT
CATTTCCCAATGTGGTATAGCGACGCAAACAAGTGGTGGAGGAGTAAAGA
CAATTGTGTTGATCCCACCAAAAATGGTGATGGCGTTTCTTACGGAACGT
GGCGTAACAAACCTCTCCCGAAACAACATTCAAACTTTGTGAAATACGGG
TACAAGAGATACGGCTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045585XLOC_045585-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000330_pilongenomesc0000330_pilon:204440..210050 -
Properties
Property NameValue
Aaloc1330-1734:406
Aaloc34-1326:3674
Aaloc1-33:5612