XLOC_045583 (mRNA) -

Overview


Name	XLOC_045583
Unique Name	XLOC_045583
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000330_pilon:281298..286335-
coding sequence from alignment at sc0000330_pilon:281298..286335-

mRNA from alignment at sc0000330_pilon:281298..286335-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_045583 ID=XLOC_045583|Name=XLOC_045583|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5038bp|location=Sequence derived from alignment at sc0000330_pilon:281298..286335- (Clytia hemisphaerica_ch_hm2_pilon)
GACTCTCAGAAGAAACTGAACCTGATAAATAAACTTTGGAAGAACTCTGT
ATATATGTACAACAAGAAGTGCTGTATGATTAAGAAAATTTTAAGGTTCT
CAAAGCTTCCTAAAGACAAGGAACAGAACCATGAGGTGAAAGAATTGAGA
CGAAAAGTTCACAGTATTTTCAAAACTTTGACAGAGGATCAGCTAGATAT
ACTACTAAAGACTTTACAAGCAAATGGTGGTATTGATTCTGAATGTATTC
TTGTCAACACAAGCACTTTTAGACATATAACTTGTCGAACAACAAGTTTT
GTACCAAGGACATTACTAGCGAAGGTTTTTCGCTTCCCAAACTTGAAAGA
TGAATATTTACGCTGCTTATCTTGTTGCTATAACCATTCCTCTTGTGATG
AAACCAAAGTCTGTATCAATCCCTTCCACTCAAGTGTTGTTATTGAGTCA
GGTAAGATTTAATTCTGAAATTTGGTCATTATGGTGATAAAACATCAACC
AGAATTTGACTAACAATCCAGTCTGGAAATTGCGGCTTGTGCGCCGGATA
TCTCCGGCGTAGATTTGAGATTTGAGATCTGCTGCCTTTAACTTTTTCCA
GTTAAGTTGGAGCAGCTCCGGCGAAACATTTCCCTTCTTTCCAGACTGGC
TAACAATCTAAATCAAACAGAACTCGAGGATTGAACAAATCTAACCGAAT
CAAATCAATCGAATGAAAACAACTGATTGCTGTATGCAACAAAATATCAA
CATTATATTACTCCAATTTTCAGATTTCATTGAGATGTGGCTTGCTAGCG
ACTTCTCATGTGCTTATATAATGCAATAGATTCTTTAATGTTTACCCTGA
GTTGGTTTGATGTCAACAACCCTCAACTATAATTCCATCCCTCACCCTCT
ACAGAGATGAGAATAGACCTCTTGATACCATTTTGACTTCAAAATTAGTG
GCGAAAACATGACGTATTGACTCCAAAAACAGTATGGCACAATACCCTAT
AATTAAGGACGTCCCTATATATACCGTATAAGTTGGTCTAATGTCGACAT
CCCTCTTCTAATTTCGACACCGTTCTTTGGAGATGGGAATAATACGAAGG
TCCGAATTGCTGATTGAAATTCATTTTCTTGCTTAGCAATCAGAGGGGAA
AACATCTTTTCTCTATCAGTGATGTCGACATCCCTCTTCTAATACCAACA
CCCTAGAGATCATGATTCCAACCTTCATATTATTCCTATCTCTAAAAAAG
GGTGTTGGAATTAGAAGAGGGATGTTGATATTAGACCAACTTAGGGTACG
GAATGTCCTTAGAGACGTTGTTTTATTGAGGACATTCTTTTTCCACTGAT
CTACTGGATCAGAAAAAAACCAGCTCACTAGCAGGGATATAGATATCTGT
TTTTTTTTCCAAATTAATTATGTGTAAAGCTTGATTTACATCGAAGGAAA
ACTTGCGGTTGTGGTATAGTGGTCATTGACCTTGGTAGCTAAATACTCAG
AACGCCTCGTGACTTTGAAAATTTTTTTGAAAACTGTAGATTTGACCCCG
GCTCGAACCACGAAAGTAATTTGTTATTGATTCTGAGCGCTGGGCAACCT
GGTACAAACTGCTAACCCTTATAAAGTGTACGCTTGCGGCGCACAACGCT
CCAAGCGATCTGTGCATCTAGCAATTTGTCTTTTGATACCATTTTGAATC
CATAAATTAGCAGCAAAAACATTATATAATCTTAGCAACAGAATAACCTA
ATAGCAAATCAATATCTTAGCGCTTAAAACTTTATTGATTTTGAAAAGTG
TCTGTAAACTAAGCTACAGAGTACATACACAGTCATTAGGCTGTTTGACA
TTTGCAGACTTTGCAACCTAATGATTGCATACGTGTTCTTTTACACACAG
AAACACAGTAAGATACCAATTAAATGGGGTAAATACTACCAGTTCATCAC
ATGGCATGGACCAGGGGTTTAGGTACCCCCTAAGAAAATAGGTACCCCCA
AACAACAGACGTTAGTAGGTACCCCCTGTGATTGATACCCCCTGTATATT
TTTATAATTAAAAAGAATAATGATAGTTAGATAAAAGCAAGATATAAATA
TATAGTTCCCCAGCCCCCAGACCTTACTGTATAAAAGTTAGGTACCCCCA
GAGATCATAGGCACCCCCTGAAATTAAAAAAAAATCCAGCCCCCAGCCTT
TTTCAGGAAGATTTTGGTTGTAGATTTGGGTTCACGCCATGTCATACAGT
TATTTTTGGAGTCTTTACATAATGTTTTTGTCCTTATTTTATGGAGTTTA
AAAATGGTACTGTGGTTAGCAAAAGGTCCATTCAACACAATTGTGAAATT
AATTTTACAGATTTGATTGAAATATCCAAATCAGCTGATTGCATTTGGTT
TGATTTGTTGGACTAAATCTGTAAATCCAGACAGAACTTTAGATAGTATG
GATTAGAAAATAGTCTATGATATAGTGGATTGAACTGTCCATATAACAAG
CATTATACTGTAATGAAATTCTGGCAAAATTTAATTTATCTAATTTTTTC
CCAAATTCAAGCTATTTCAGGCTTTCTAAAAACGAATTTTCAGCCTATTT
AAAAATATTAAAATAAAATTTTGTTTATTTTTCAAAATATTTTTGACCAA
AAATATCCTACAGTTTTAAAATAAAGGCAACAAAGAGGTACTGGTTCCCC
ATGTCTTGGTTATTATTTCTGGTCAAATCTAATTTATTTGTTGATTTTAG
AATCACCGCTGCCACCATACAGTGAGCTGACACCTTCAACGGCTTTGTTC
AGTGAATCGACAACAACAACAACACTTGATGATGATGACCGACACATTCC
AACACACGTTGCACTACCCAGGACACCGACACATCCTGCATTTCTCGGTT
ATAAAGATTTGGGAAGCACCTGTTCATCAACCTCCTCCACATCTTCCACC
TCATCAGGTAAATTCATCTTTCCATCCTCAATTTGGTCAGTTCCTTAGCC
CAAAGCTCTGTCACCAACTCAATATGATTTTGGGTTTACCAAAGTCCTGG
TCGCACATTTCTCCTTTTAGCACATAACCTTTATGGAGCGTTTAGTCCTG
TGGTGATCATTGTGCTTTTTCCCAGGGTTTTAATTTGCTTATTTTATCTA
CCTCATTTGTAAGAAGGTGTGTAAGGCTTTCTGATTGTTTTGGAATTCTT
TAAAGATTTTGGTTTAAAACTTTGTTTTGATTTCGTTGGAATTACTTTGT
CTATATCATTTGGAGATTTTTGCATTTTTGAAGACAGATTTTTGGGGTAG
TCTCTTTTTTTTCAAAGCTGTCATGGAAGTGTTTGCTCAGCTTTTTGGTT
TCATCACAACAACTGACTTTTAAGAGTCATCACTGTCTGAGAGAACGCTT
GTAAATCTTTTCGTCGACTCTCTCCTTTATTTTTTTCTTGGTTTCGTGTC
CTCTCAAATTTCAATTCGATGATGATATAAGGAAGGAGCTTTATTTGGTG
ACAATATTTTATCTGAAACGGTGTACAGTATGTAAAATGATTCTCAGACA
ATCGTCTTTTAAATCGATGTTTTATTACAAGAAGATTAACCTACGCTTTT
TCTTCATCCTGTGTTTGATTTTCAGACGACTGTTCGCATACCAAAAGAAT
GGAATCGAGTTGAAAGATTTCTATTCCCTCTTTGTTTCTCTCTCTCTTCC
TTTCTTGAACTCTTTTATTAATAGCCTGGCAGTGCATTGGAAAGAACATC
AAGTATTGAGACAGAATCTATGAAACGGCTGGGTTTTTCTTTCCCCTTCT
CTGTTTTGCTTCTTTTAGAAATTCTCTCCTTTTTATCGTTTTGTCTGTGT
TGTTTCAGTAAACGTTTATCCTTCTCAAAAAAATGTTTTTGGCACAGTCT
CAAAACAATGTAAAACGAGGCCAGAAAGAGACATAGAGGATTGCTGTGTT
ATTTTTCTTGGATAAACTGTCTTTATCATTTTTTTGTTCTAAATGAAAGT
TGTCTAGGGGATGCATGTGATAAAAAGCTTTCTTAATGAGTGCAATGACT
CAATGACTGAAATACCTTTCTTTCTACATGTCTGGAGAGAAATTAATTAG
ATTTTCTAAAGATTATGTTGCACAGCCTTTCTCAAGCAAAGATAAAAAGT
TTTCTACTTTTCTTACATAAACTGTCTTGATTAAAATTTTTATTTTGATG
CATTTCCTGTGGTTTAAAAAAAATCTCATCCTTCGTTCGTTCGATTCATC
TGGTTGTCAGCAAAAAGAACCTCGGGTCACCCTTTATTATCCGAACTTCA
TTTTAATGCATTCCGGTGTATTCGAACGTAGAATTTCAACATAAGAGAAA
ACTTTGAATGAAAACAGTTCCTTTTTATCCCGTTTTCTGGTATTTTTTTA
CCCTTAATGTTTTCTTGAAAGTGATAAGGCTTCTTTCTTTTATAGAACGT
TCGCATAGTGGCCCTGAACGAAATTGGTATGGTGGCCCATGGTGCCAAAT
TACGTACTGGGAAGAAAAATCAAGAATCGGAAGCCGGTTTGACGTCGCTA
AAGACTGTGTGAACGTGTTCGAAACGTTACCTCAAGGAAGTGGCTTAGAC
CTTTCCATGTTAACGCGATCACGACCGAACGAAGCGTCAGAGAAAGTGAA
AAATGATATCGGTTATGGATTTCAATTGACACGAGAAGCTGACGGAATCT
GGTTGTATAATCGAAGTGACATTGTTTTATTCGCTGGCTCACCTACCATT
CAACTCGGAAGTGAAAATTTGACGCAGCCCGTCGTTAAACGGCTTCCGCC
CGGAAATTCCGTCCTCGTGTATGATCCGAACCTTCTGCCGGACCTTTCGA
CCATCGAGAAGCCGGGACTGGAAACAACGGAAGATGGAATGAAAAGTTCA
TCAGCGAGTAAAGAAATGCGAGGCGGGACTCAACCTTTCTGTGTTCGCGT
CAGCTTCAAGAAAGGCTGGGGCAAGAACTACACTCGGATGTACATTACAC
AATGTCCTTGCTGGGTGGAAATTTATCTGAATATATGA

Coding sequence (CDS) from alignment at sc0000330_pilon:281298..286335-

>XLOC_045583 ID=XLOC_045583|Name=XLOC_045583|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2502bp|location=Sequence derived from alignment at sc0000330_pilon:281298..286335- (Clytia hemisphaerica_ch_hm2_pilon)
GACTCTCAGAAGAAACTGAACCTGATAAATAAACTTTGGAAGAACTCTGT
ATATATGTACAACAAGAAGTGCTGTATGATTAAGAAAATTTTAAGGTTCT
CAAAGCTTCCTAAAGACAAGGAACAGAACCATGAGGTGAAAGAATTGAGA
CGAAAAGTTCACAGTATTTTCAAAACTTTGACAGAGGATCAGCTAGATAT
ACTACTAAAGACTTTACAAGCAAATGGTGGTATTGATTCTGAATGTATTC
TTGTCAACACAAGCACTTTTAGACATATAACTTGTCGAACAACAAGTTTT
GTACCAAGGACATTACTAGCGAAGGTTTTTCGCTTCCCAAACTTGAAAGA
TGAATATTTACGCTGCTTATCTTGTTGCTATAACCATTCCTCTTGTGATG
AAACCAAAGTCTGTATCAATCCCTTCCACTCAAGTGTTGTTATTGAGTCA
GGACTCTCAGAAGAAACTGAACCTGATAAATAAACTTTGGAAGAACTCTG
TATATATGTACAACAAGAAGTGCTGTATGATTAAGAAAATTTTAAGGTTC
TCAAAGCTTCCTAAAGACAAGGAACAGAACCATGAGGTGAAAGAATTGAG
ACGAAAAGTTCACAGTATTTTCAAAACTTTGACAGAGGATCAGCTAGATA
TACTACTAAAGACTTTACAAGCAAATGGTGGTATTGATTCTGAATGTATT
CTTGTCAACACAAGCACTTTTAGACATATAACTTGTCGAACAACAAGTTT
TGTACCAAGGACATTACTAGCGAAGGTTTTTCGCTTCCCAAACTTGAAAG
ATGAATATTTACGCTGCTTATCTTGTTGCTATAACCATTCCTCTTGTGAT
GAAACCAAAGTCTGTATCAATCCCTTCCACTCAAGTGTTGTTATTGAGTC
AGAATCACCGCTGCCACCATACAGTGAGCTGACACCTTCAACGGCTTTGT
TCAGTGAATCGACAACAACAACAACACTTGATGATGATGACCGACACATT
CCAACACACGTTGCACTACCCAGGACACCGACACATCCTGCATTTCTCGG
TTATAAAGATTTGGGAAGCACCTGTTCATCAACCTCCTCCACATCTTCCA
CCTCATCAGAATCACCGCTGCCACCATACAGTGAGCTGACACCTTCAACG
GCTTTGTTCAGTGAATCGACAACAACAACAACACTTGATGATGATGACCG
ACACATTCCAACACACGTTGCACTACCCAGGACACCGACACATCCTGCAT
TTCTCGGTTATAAAGATTTGGGAAGCACCTGTTCATCAACCTCCTCCACA
TCTTCCACCTCATCAGAACGTTCGCATAGTGGCCCTGAACGAAATTGGTA
TGGTGGCCCATGGTGCCAAATTACGTACTGGGAAGAAAAATCAAGAATCG
GAAGCCGGTTTGACGTCGCTAAAGACTGTGTGAACGTGTTCGAAACGTTA
CCTCAAGGAAGTGGCTTAGACCTTTCCATGTTAACGCGATCACGACCGAA
CGAAGCGTCAGAGAAAGTGAAAAATGATATCGGTTATGGATTTCAATTGA
CACGAGAAGCTGACGGAATCTGGTTGTATAATCGAAGTGACATTGTTTTA
TTCGCTGGCTCACCTACCATTCAACTCGGAAGTGAAAATTTGACGCAGCC
CGTCGTTAAACGGCTTCCGCCCGGAAATTCCGTCCTCGTGTATGATCCGA
ACCTTCTGCCGGACCTTTCGACCATCGAGAAGCCGGGACTGGAAACAACG
GAAGATGGAATGAAAAGTTCATCAGCGAGTAAAGAAATGCGAGGCGGGAC
TCAACCTTTCTGTGTTCGCGTCAGCTTCAAGAAAGGCTGGGGCAAGAACT
ACACTCGGATGTACATTACACAATGTCCTTGCTGGGTGGAAATTTATCTG
AATATATGAAACGTTCGCATAGTGGCCCTGAACGAAATTGGTATGGTGGC
CCATGGTGCCAAATTACGTACTGGGAAGAAAAATCAAGAATCGGAAGCCG
GTTTGACGTCGCTAAAGACTGTGTGAACGTGTTCGAAACGTTACCTCAAG
GAAGTGGCTTAGACCTTTCCATGTTAACGCGATCACGACCGAACGAAGCG
TCAGAGAAAGTGAAAAATGATATCGGTTATGGATTTCAATTGACACGAGA
AGCTGACGGAATCTGGTTGTATAATCGAAGTGACATTGTTTTATTCGCTG
GCTCACCTACCATTCAACTCGGAAGTGAAAATTTGACGCAGCCCGTCGTT
AAACGGCTTCCGCCCGGAAATTCCGTCCTCGTGTATGATCCGAACCTTCT
GCCGGACCTTTCGACCATCGAGAAGCCGGGACTGGAAACAACGGAAGATG
GAATGAAAAGTTCATCAGCGAGTAAAGAAATGCGAGGCGGGACTCAACCT
TTCTGTGTTCGCGTCAGCTTCAAGAAAGGCTGGGGCAAGAACTACACTCG
GATGTACATTACACAATGTCCTTGCTGGGTGGAAATTTATCTGAATATAT
GA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_045583	XLOC_045583-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000330_pilon	genome	sc0000330_pilon:281298..286335 -

Properties


Property Name	Value
Aaloc	685-1275:592
Aaloc	478-681:2287
Aaloc	25-474:5039

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XLOC_045583 (mRNA) -