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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000179_pilon:191769..196509+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_045539 ID=XLOC_045539|Name=XLOC_045539|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4741bp|location=Sequence derived from alignment at sc0000179_pilon:191769..196509+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTGA
TGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATGG
ACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCCT
ACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCCG
GGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCTT
TACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTCA
TACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAAC
ACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGGC
TTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAAC
GttgtttgtgttgttgttgatgaAGCCCATAAAATTTCGTGgtaagtaat
ttttatttctatgaaAATGCCTAAAGCAAGGCCTTTTTATTTGCTAGCAA
ATTGAAACAGAAAAATCTTTCATCCTGCATATATGTTCcatgtatttttt
aaatcaaaatttcaatttgtgACATTCCCAGGCTCAATCATGATATATCA
TGATATATCTTAACAGAATCAATGccaagaaaaaagcaaaacgaATTTCG
ACATTCGATTTTGCAACACTGTACACAACCCTTCCACACGATCTTCTCAT
TGAATTCTGGGTTGTACAAAATTCTTCGCCTGTTATTGGACATCTTAACA
GAATCAATGccaagaaaaaagcaaaacgaATTTCGACATTCGATTTTGCA
ACACTGTACACAACCCTTCCACACGATCTTCTCATTGAATTCTGGGTTGT
ACAAAATTCTTCGCCTGTTATTGGACATCTTAACAGAATCAATGccaaga
aaaaagcaaaacgaATTTCGACATTCGATTTTGCAACACTGTACACAACC
CTTCCACACGATCTTCtcattgaaattttaaccaaaattattAACTTTGT
GTTTGATTTAGGTTGTAGAAATAAACTTGGTTTTTCAAATACTTCAGCAT
ACTGGACTACAAAAGGGAAGGATGATAGGTTCTTTACTAGTACTTCACTG
TCTGAGTGTGTGtcctttctgataaaaaattgctttttcaaagttggcaa
TTCTATTCTTAAACAGTGCATTGGAATACCCATGGGAACAGATCCTGCTC
CTTTTTGGGCAAATctgtttttgtaccattttgaaTCTGAGTATGTCAAA
GGTCTCATTTCTGCTAGTTCGCCTAGTGCCTATAACTTCCACTCTGTagg
tagatttattgatgatttgtgtgccttaaatgacagagatgagtttcata
attgctacaaacagatttaccctaaagaattagatctcaaagttgagcac
catggaaaccatgcatcgtttttagatttagatatcaccattgaaaacaa
tatttttagatataaactttttgataagagaGATGCCTTTCCCTTCTTCA
TTGTAAGGATGCCACATGCCCACAGTAACATCCCATCGTGCATTTATATG
GATCtgtcttttcagaaattttacggatagcacgtagcacactcatgttt
gaagatctgactcctagagtcactgagcttttcattcgaatgcGAAACTA
GGGTGCTTCAAACgctttcttgaagaagcaagttgtcaaatgtttttcca
ggtttcctgactgttttatgaagtatgggaaaaccgtcgaagaattttta
catattttgaaattgaaattgtttcttgtgtattgtatgtgtgtttgttt
gttttttcttgttttgtttttgtttgtttttttttttttttttttttttt
ctgtctaaagaattagcattagcattggaggtattcatttcctacttttc
tttgccctgtgcagtcctcccgtcgcggcacgccgaaccgggttctcggc
caacttacgattctattcttttcagtttttgtgtgattttttctattttt
atgtaagattgtgtttgttACAAATGTCTGTTTCACCTGTAGTGTACGTG
GGATAGTTGGTACAGTGTGTCTTTCTgcccttttgtactgtattttgttg
tagtgtctgtttgttgtctgttatttatttggaagctgctggtcagttcc
tttttactatgttttccgaaggcgactgagtgtgggcccttaaacacgtg
gaaagtcactatgccagtcacaagtctgggacttcgggttttgttttgtt
tatgtatttttttttttttttttttttttttttttaaatttatttgatgt
gtttgcttttgtatttgtccccattttgtatgtattttgatgaacttacg
gaagtgtgtttatcaaaaaagttttttgcaattcattgtttctccactat
tacttttcttctatctttatttggattaggtttttctttcacataccact
atttaaattccctttaactttttgctaaattaccctctgtttcggaatga
ttaaaaaataaaaaataccaaaaaaatcgtaaatacacacaattaagaaa
aatattcttaacttttttcgtttttatcagtttgagttatttatatatca
atacttttctttttctaaaatgacagatattacatatcttcactatatat
atgtgtaataaacacgtttttttaataagcataacACTAATAGGCATATT
CAGGCTCAAATATTAGAAAAACTtaaatctaagaaaagtttgaaaatctc
tcatggatcaaaacactaccctcaacataatctcagcaaaagctgaaaca
tcatcacaccccaattgctcgaccgacaataccaacaaatatgatacaaa
acaacaaaacattcaaacaaacaattatacaaagaaaaagaaaatggcaa
gatgaagacaaagcctagagtcaggtgtggtaccaagagtaagcactctc
tggcgcccgcgagccacccgtcatttttaccaaagaagaaatagtgttga
tcagacactatttcgtacataaaaaaacagagaagagggattaaaataaa
acaaattgtaaacaaaaaagtttaaaatttctgaccatacagtgaagtac
agcagaaagaaagagaaaaagttgaaaggttGACCGAGAGCCCGGTTCGG
AACCCCGTAACCGAGTGGCCGTACACATTGGAAACGAATTAGGAAATGTG
ACAAACTCAACAAACTTAGACATAAACTACAAATATACTGGACAGAGAGA
AAGATACAAcacattgaaatataaaacgactctatcgattaaaaagaaat
gaaaattagtaaattagtAAAAGAAACAGTGACAagtccaaatttttttt
gttgtttagttGTGGAGtaatgaatctgaaaattttttcgcattgCTGAA
AAAGGTTCTCAAAACTTGATGGCGACCATacattttcctcaaaacttttt
ccaaccgTGTAATCTTTGCTCCTTGCTTCTTTGCTCTATCAATGAGAGAC
ATACTTGCACTAATGAAATTGTTCACACTGGAACAGACCCTACCAATCCT
CAAAATTTCAGCTCCCACACAGTTATAAAACATCCGAGATGGAATATTGC
TCGACGCAAATAAAAGACGAACAATCGAAAAAGGAAAGTTATCTCTTTTG
TCATAGAGTTTTGCATCTATGTAACCGTTGTCATTGGTTAATGAGAGATC
CAAAAAAGTAATAGTATCACCTGAACTTTCAAGATTGAGCTGAAGTTCAG
GAGGGTagatttctttatagttttccaTAAATAAATTGTCATCATTGATG
GTTAAAAGATCGTCGATGAATCGAAAAGTGTTTGAAAAGCGCCTtgcttt
ttgtaaattttctttcttgaggCTTTTCACCCATACATATGCTAAGCCTC
AGTCTAAGATTTCAAGGCATTTTTAATCtcccaaattacaaaaaacttGC
AAAATGTATGTACATAAGCATAGCATATAAGCATGAGGCTCAAAAAATTC
GTTTTGCTAAGCATAGAGGCTCACCAAAATTTACCCTTACTGCATTGAGA
agttttttactctttttttcaGGGGTGTTCCTGCTTCATCTTCTACAGAA
AGCGTATTCAGAGAAGCCTTTTCTCGCATCGGAGAGATTCGATCATTTTG
TTCAGAGAAAGTTCCCGTTCTGGCCCTTAGCGCAACAATTGAGATGGACT
TCACTGAAATTTTGCGTGGTGCATGCAGTCTGTCTAAATATGTAAAGTAT
ATTCATTCTTCTCCTGATAGAAAGAATATTAGACTATCAATCGTAGATGC
TGGGAGCAAATCAATATCGTGCTTCAATTGGCTGCTCAACATTATCAGtc
aaaacagtgaaaacactccaAAAGTGTTGATATATTGTCGATCTCAGAAA
CTGGTTTCTTGGTTATTTGGGCAGTTTCTATCCAAACTTAGATTAGGAAT
CTACAAAAATCGGGAAAAGCATTATGATAATTTTCTTGTTGGCATGTTTC
ATGCAGACACATCACCACACAACAAAGAGAAGTACCTTGCTTCGCTTACT
TCTGTAGATGATACATTACCTCGTGTCATAATTGCAACAAGCACAATCGG
GTGTGGTATcaatgcaaaaaaattaaagtatgtTTGTCATTTTGGGCCTG
CTTTTTCACTGCCAGCAGATTGGGCGGGCAGGACGGAATGA Coding sequence (CDS) from alignment at sc0000179_pilon:191769..196509+ >XLOC_045539 ID=XLOC_045539|Name=XLOC_045539|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2220bp|location=Sequence derived from alignment at sc0000179_pilon:191769..196509+ (Clytia hemisphaerica_ch_hm2_pilon)
TTTAAGTCACAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTGA
TGCAATTAAGAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATGG
ACTGCATCGATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCCT
ACCGCATATGGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCCG
GGCCCTTCCCAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCTT
TACAAAATCTGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTCA
TACCTCAACATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAAC
ACTTAAAATGAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGGC
TTTTGTCCTCAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAAC
GttgtttgtgttgttgttgatgaAGCCCATAAAATTTCGTGTTTAAGTCA
CAAATGACTGAACAATCTTCTCTAGAAAAAATTGCAACTGATGCAATTAA
GAAAGTTGATTCAAATTTCTCGTTGAAGAGAAAGCAGATGGACTGCATCG
ATAATGTTGTTGCTGGTAAAGATACTCTTGCTATCCTTCCTACCGCATAT
GGAAAAAGTATGATTTATCAGCTACTTCCTTCAATCTTCCGGGCCCTTCC
CAACAGTTCGAAGCATCCAATTGTTCTTGTGGTTTCGCCTTTACAAAATC
TGATACCGAATCAAATTGCTGAAGCTGAAGAACTTGGTTCATACCTCAAC
ATCAAGGCATGCAGCCTTGACAAATGTTCAGACGTTGAAACACTTAAAAT
GAATGGGTACAACATCTTATTTGGAATTCCTGAAAAATGGCTTTTGTCCT
CAGTGAAAGATTTTCTCACCACTTCATTTCTTCGAAAGAACGttgtttgt
gttgttgttgatgaAGCCCATAAAATTTCGTGGGGTGTTCCTGCTTCATC
TTCTACAGAAAGCGTATTCAGAGAAGCCTTTTCTCGCATCGGAGAGATTC
GATCATTTTGTTCAGAGAAAGTTCCCGTTCTGGCCCTTAGCGCAACAATT
GAGATGGACTTCACTGAAATTTTGCGTGGTGCATGCAGTCTGTCTAAATA
TGTAAAGTATATTCATTCTTCTCCTGATAGAAAGAATATTAGACTATCAA
TCGTAGATGCTGGGAGCAAATCAATATCGTGCTTCAATTGGCTGCTCAAC
ATTATCAGtcaaaacagtgaaaacactccaAAAGTGTTGATATATTGTCG
ATCTCAGAAACTGGTTTCTTGGTTATTTGGGCAGTTTCTATCCAAACTTA
GATTAGGAATCTACAAAAATCGGGAAAAGCATTATGATAATTTTCTTGTT
GGCATGTTTCATGCAGACACATCACCACACAACAAAGAGAAGTACCTTGC
TTCGCTTACTTCTGTAGATGATACATTACCTCGTGTCATAATTGCAACAA
GCACAATCGGGTGTGGTATcaatgcaaaaaaattaaagtatgtTTGTCAT
TTTGGGCCTGCTTTTTCACTGCCAGCAGATTGGGCGGGCAGGACGGAATG
AGGGTGTTCCTGCTTCATCTTCTACAGAAAGCGTATTCAGAGAAGCCTTT
TCTCGCATCGGAGAGATTCGATCATTTTGTTCAGAGAAAGTTCCCGTTCT
GGCCCTTAGCGCAACAATTGAGATGGACTTCACTGAAATTTTGCGTGGTG
CATGCAGTCTGTCTAAATATGTAAAGTATATTCATTCTTCTCCTGATAGA
AAGAATATTAGACTATCAATCGTAGATGCTGGGAGCAAATCAATATCGTG
CTTCAATTGGCTGCTCAACATTATCAGtcaaaacagtgaaaacactccaA
AAGTGTTGATATATTGTCGATCTCAGAAACTGGTTTCTTGGTTATTTGGG
CAGTTTCTATCCAAACTTAGATTAGGAATCTACAAAAATCGGGAAAAGCA
TTATGATAATTTTCTTGTTGGCATGTTTCATGCAGACACATCACCACACA
ACAAAGAGAAGTACCTTGCTTCGCTTACTTCTGTAGATGATACATTACCT
CGTGTCATAATTGCAACAAGCACAATCGGGTGTGGTATcaatgcaaaaaa
attaaagtatgtTTGTCATTTTGGGCCTGCTTTTTCACTGCCAGCAGATT
GGGCGGGCAGGACGGAATGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000179_pilon | genome | sc0000179_pilon:191769..196509 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 493-1110:4124 |
| Aaloc | 1-489:1 |
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