XLOC_045274 (mRNA) -

Overview
NameXLOC_045274
Unique NameXLOC_045274
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000031_pilon:332876..338685-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045274 ID=XLOC_045274|Name=XLOC_045274|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5810bp|location=Sequence derived from alignment at sc0000031_pilon:332876..338685- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACATTATCACAAAAGGAATTATTATCAGTCATTAGTATTCTTGCAGA
AGAGTCAGCTTCAACATTTGATGTTATATCGAATGCGCTTCATCATTATT
TTGGTCCAAATGATTATTTTCGTCTTGGAACAGCACTGGTAAGTGGAAAT
ATTAATTCAAGAAAACATGCTGTATACTAAGGCTGGGCTTAAAAAATTGT
TGGTTTGCCGTCACCCGACCCTAGATTTTGAAGGCGGGTCGGTCGGTCAA
AATATTTTTTTATTTTGGGGATTTATGAAATTTTCGTCCATAGAAGGGTT
AACAGTTTGTTTACATTTAGGTAATTTTGAATAAAAAACAGAAGTGCTAG
CAGGGAATTTACGATTCTTATGCTTGAGACAAACAAGACACGTGTTTTGA
TTTTTTATTGTTTGAAGTTTTTGAAGGAAAAAAAATCTTCTTTAAAATGG
CAATAAATTTTTTTGGGTCGGCAGGTTTCGAGGTAGGGTCGGTCGGGTGA
CGGCAAACCAACAATTTTTTAAGTCCAGCCTAGGAAATATTGAGCAATTT
TGTATCATATCATTATAACTATCTTCTTCACGTAGCAATAAAAATGATCA
CTTTTTCCAAATCATACTCTAAGATGGCTAAACTTATCGCAATCCCGGCT
AAACTTTCCTATTGACACTTTACAACAGAAAAAGACTGATACTCTTGGGA
GGTAATAAAGTAACTTCAACCTGTCAGTGCTGACCTGTAGCCTATTTCCT
AGCATTTGTATGTAGCAGAAAATCTTTTCTGTTGGTATGCCTGGTTAAAG
CAGCAGAAATATCCTAAAAATGCGCTGCCAGGAATGTTTAGCTGTGAAAA
TAATACTTAGCCATTCTAGGGTAGTTAGTATTCATTACTAAGGAGATCTT
TGCCTTATTATTTATGTTGGGATAATTGGTCTAGACCAAATTATTTTATT
TTTTACATTTAACAGCTCAGGAAATTTTTAAAGGTTTTATTTTTACATAT
TACTTTTTATTTTATTATATTTTACATATATTTTACATGTCTCATATCAG
GACAGTGTCTGCCTATTGTTATATTGTACTGATATAAGCAAAAAAATGTT
TTTCTTTTCCTCTTTCTGACCATCCTTGCTCCACATCTGTGTCAATTCAA
TATTAAAAAGCTTGCAAATTGAAATTGATGAGCAAGCAAACGATATAGCT
CTTAAATTTGAAAACAAAACCTTAAACACTAAATGTTATATTATTTTTGA
AAATGTTAATTCTATGTTTAGTGAATTGATACATCATCTCTGTATGTAAA
TTTTAGCTGATGTTGTTCCAACAACCAGATTTGCTACCTGATCAAAACCA
ACGTGTAACGATTCTTTTCTTACTGTACGAGATGTATAGAAGTCAACCAT
TGGTTAAAAATCCTTTCGCCCCATTGTTTGTTCATCTGCTCAGTGATGTA
CCAGATAAAACGAGCGCAATGGAAATTTCACAACCTGAAAAAATGTTTCT
TTATCAGTTGATCACGACACCAGCTGTTACTCCTCAGGTATTAGAATTTC
TTATAAGGGGTCACATGGGCCCCGGCTGGCCATTTTGAGTGTGGGGGGGA
CACCAAGGTTGGGCGACGAAGAAATCTTTTCACTTTTTACACCCTCAAAA
CACCTTAAAACGTTATCTAATTGGGGAGAATAACTTGGGGAGAATAACGG
CTTAAAATAGTAAATTTTAAAAAGTATGGCATGGTCTGCAAAAAAGTGGG
GGGCCCATGGGTCATCCACATAGTACGTACGCAAAATATCTCCAGATCCC
CCCCCCTTGTATGCAGAGAACAATAGAAATAACGTCGTTTAAACAATAGA
CGTACGCTTTTGCTAAACCACTCCCCCTTCACTGCGTACATACTACATGG
ATGGCCCCTGATCAATGGATGTACCGTACCCTGTACCCTGTGTTATGTGG
TCACCGAACTGCATATGAAGTTTTTGCAGGTTTTTGCAGGTTTTTGCAGG
TTTTTGCAGAGCATCATATAGTTTGTTGATACACTTAAAATATCATAAAG
CTCTAAGGTCATCGTAGCTGTGGTTTTCGATGTTTATCATTTTGATAGAT
ATTCATTTTCAATTTATTGTTGTTTTTCTTCTTACCATTTTTAACAGCTG
TTGAAAAAGACACCACGACAAGTAATGACAATGGACATCTCCAATTTTCG
ACCAATCGACATAAGTGAACTTCAAGTCGCCATGTTGGAAAAGCAAACAG
ATTTACCACAAGTCTCAAGGAGCGGTATCAACCCTTTGGTCGCTGACCCG
GATATGGATACTAACGGAATCGTCAATCCCGCAGGTAAATTATCAGATAT
ATGAGTGAAAACTTCCGTCAATAGAAAAGCTACGTTATAGCATAATGTCC
ACCATCATAGAAGGGAGTATTTGGATTTTAATCTTTTCTGCGGACCGTCC
TCGCTATGTTATTGTGTTTAAGACTAGTTAAGACAGTCATTTTAACCTGC
CAGCCGACTAACATGGTTATTTACATGACTTACTTTTTTTTTCATTTATA
CCAACACCCATTAAATCTTGGAATTTGCTATCCCAAAATCCAACGTTTAA
AAGGGTATCTCTGGTTAGGTGAATAATACAACTAGTATATTAGTTCATTT
TTTCTTAAACCCCTCAGGAGCATACAGATGCTCTGGATTGTCGTGCTTAA
TGGGAACGACGAAATTTCTAACTGTTCCGGTCGATACAAGCTCCGCGTGC
CATCCCTAGTGACAGCTGTCGTTTTATATTCAATTGAGTCTCTATAACTG
GAAAACTTGTTCGAGTTTTTGAAATTCCTAGTGATGAAGGTTTATAAAGC
ATTGTTAACTGAAGGGACCATAAAACTTGTTCGATTTTAAGAAGGCATTC
GAGTTATAGAGGTTCGAGTTAAAGAGACTCTACTGTACCAGATAAACCTT
TTACCATTTCTATTTCTTTCATTCCAGTTGCACAACAAGTGATCGAAGGG
TTGATATGTAACCCACTGCACAGTGAAAGAGCATTGGAGAATTCCATACA
ACCCACTTTCTTCCGGCTGCCACCTCCTCTTCATAAAGTGGAACAAGACG
AGCTCTGCTGGATGAACCCAAAAGGTTTGATATTCTGCAATGAATGTACC
ATTTTAAAGCTATCGCAAGTGAAAGCATTTGGCTACTGTGTAAAATGTTT
CAGTTTCGATCCCAACAAGATCATACCAAAGGCCTTAAAAAATATTTAAT
GTTTGGCTACTTACTGAACAGAAAAGTCGAACACTAGATGAAAAATCCAG
GGAAAAGACCCAAGCCCTTCCCTATCTTCAGATAGACAGGCAAAAAAAAG
GGAGTCTTGGTTTTCCTTGACTGTGCAAACTTATTTAGTTTATAATGAGA
CTATCCGAAGGTTCCATCATAGTGTCGAAATTCCCAATTCCAAATTCATC
CGAAGATCGTGAATCTATTTTCGAGGCCTTAAGAAAGGGAGTGTGTGATT
CTGTAGATTCTTACACACTTCTAAACTTTTTTCTTGGCAAGTACTATTTT
ACCAAAAAAAAATTTCCTATAAGTAGCCCCTACATACCAACACCTAGGGT
TCGTAAAAGCTCTCGTGGGACTGCGTGGGACGCAACTGCAAAAGTTTTCA
TGGCCAAAAAAAACTGATATGAAGATTTCTAACGTTTTGGACAATTAATA
ACTTTTCATTTCAGATGATAGTTTCACTTTCGAATGGGATACAATGATGT
GTAGTGAAAATTCTGCCGAAGTTGAAGTCAGGCAATTAATGGGAAAGGCT
TTCAAAGGAGCCCTCACCTTAACTCAACAGCAGGTACATGCTTTCAAATT
TTTGCTCTCAAAAATTGTGTTGATTTCAAGAAAATTGAAAAAAAAATCTT
AAAAGGTTGGGATTCTTACATTCGAAAGCCTTTCTAAGATTGCGAAACCA
AATCATTCCAAATTTGAGGAACTTGATAAAAACATCTTAAAGTATGTATT
GTATTATCTTGTTAAGTAATTATTATCTCTAATAGGGTCTGTTACTCTTG
ATGAATATCAAAGACCTGTAACCGTTCGTCTAACAAATAGTTTTCCCTTT
TCTACTATAGCAACTACTCAAAGAATTGGAGAAAGATAGTAAACTAGTCT
ATCACGTTGGTTTGACACCGAGCAAACTCCCTGACTTAGTTGAGAACAAC
CCTCTGGTTGCCATTGAAGTTCTCTTGAAAATGATGCAATCCTCGCAAAT
CACTGAGTAAGGGATTTTAAGTTTAAATATCGTTTTGTTCTTATCAAATA
AATTCATATTTAAATTAGCCTCCATCTCTTCTATATCAAGGTCGGTTTTC
AATATTTCTTAATATTTGTCTTTTCAACATCTCGCTGGTCACAAGCACAA
TCAAGATCAAAGGAAGCACTAAACTTTTTTCGCTTTTAGTGAAACTTTCT
AAGAAAAAAATGGCTTGGTATTCTAGCTCATTTTCTGAAAAATTTGCTTT
GACCACCCCTGATGTTATACCATATTTTTGCTTATTGAGCCAGGGGCTTT
GGTTTGCCATTGTAAAAAAGCCATGATTTTCCATGGTTCTAAAAAGCTTT
ACTTTTCAAAATAGCGAAAAAAATTGTCAAATTTCAGGGCTCGAGCCTTA
GCAACCTTAACAACCTGGTTGCTTATAAGAAGAAAAAAATGTGTAACAGG
GTTCTGTACTTCCCAGCTAAAAGTTCAATCGAAAAAAAAAAGTTTTAACC
AAATTTGTTCTTTCTAGATATTTCTCAGTTCTGGTCAACATGGAGATGTC
CTTACATTCTATGGAAGTTGTGAACCGCTTGACCACAGCTGTGGATTTAC
CACAAGAATTCATCCACTTCTACATCTCTAACTGTATTTCTAAATGTGAA
ACAATCAAAGATAAATACATGCAATCGAGGCTGGTACGATTGGTAAGTTT
GTTGATACACATACCCTTGTTTCCATTTTAATTAATAACGTATTTACAAT
TGAAGCGTTAATTACGGTAAACTTGAGTAAAGTCAGACCATCGGCTAAGC
CGAAAATGAAATTGACGGAAATTTCGTGTTATAAATGGACTGGTCTTCAA
AATACCAGACAGGCATGTGGACAGAACTGAAATTTTCGATACCTATTACT
GGCTAAAAAAACTAGCAGTCATCTCTGAGTTTTGAGGATGGGTTCAGCTG
CAAGTTTCTTTTGTCTCTTATACAAATCACCCCCCCCCCCCCTTCAGGAA
CAACACATTAAATCAATCAGAAAATACGTTTTTTAGCCTTGTTTATATTC
CTTTTTGTATACCAACCAAACAAGTGGCCGTGCCTAAATTAAATAATTCC
GATTCTCCATATCATATTTACCCAACTACCAGTGGTAAAAATTTCGAGGC
CAAAGTACTTGTCAATTTTCAAAATTTCAAGAAGAAATTTCCCTTACTAA
AAAAAGTTACGCAGGAGGATTATAAAAACTTAGGAAATTCAAGCTCTGAT
GCTTATTGAGGAATAATTTATTCGAAGAAAAACTCTGGTTTTTTACCACC
AACTGTTGCTAAATCTTTCGTTTTTTTCGTTTTTTTAGGTTTGCGTATTT
CTTCAATCCTTAATTCGCAACAAAAGTATCAACATCCAAGACATTGCGAT
TGAAGTGAATGCATTCTGTGTGGAATTCAGTAGTATACGTGAAGCTGCTA
GCCTCTTCCGATTATTACGTTCTGTTGAAAACAATGAGGGTGGAGAAACG
AACACTAGCGGTGGCAATAAAAGTGCAAATTCAAGTCCTACGTCTGCTAC
AGGAAAGTAA

Coding sequence (CDS) from alignment at sc0000031_pilon:332876..338685-

>XLOC_045274 ID=XLOC_045274|Name=XLOC_045274|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2730bp|location=Sequence derived from alignment at sc0000031_pilon:332876..338685- (Clytia hemisphaerica_ch_hm2_pilon)
ATGACATTATCACAAAAGGAATTATTATCAGTCATTAGTATTCTTGCAGA
AGAGTCAGCTTCAACATTTGATGTTATATCGAATGCGCTTCATCATTATT
TTGGTCCAAATGATTATTTTCGTCTTGGAACAGCACTGATGACATTATCA
CAAAAGGAATTATTATCAGTCATTAGTATTCTTGCAGAAGAGTCAGCTTC
AACATTTGATGTTATATCGAATGCGCTTCATCATTATTTTGGTCCAAATG
ATTATTTTCGTCTTGGAACAGCACTGCTGATGTTGTTCCAACAACCAGAT
TTGCTACCTGATCAAAACCAACGTGTAACGATTCTTTTCTTACTGTACGA
GATGTATAGAAGTCAACCATTGGTTAAAAATCCTTTCGCCCCATTGTTTG
TTCATCTGCTCAGTGATGTACCAGATAAAACGAGCGCAATGGAAATTTCA
CAACCTGAAAAAATGTTTCTTTATCAGTTGATCACGACACCAGCTGTTAC
TCCTCAGCTGATGTTGTTCCAACAACCAGATTTGCTACCTGATCAAAACC
AACGTGTAACGATTCTTTTCTTACTGTACGAGATGTATAGAAGTCAACCA
TTGGTTAAAAATCCTTTCGCCCCATTGTTTGTTCATCTGCTCAGTGATGT
ACCAGATAAAACGAGCGCAATGGAAATTTCACAACCTGAAAAAATGTTTC
TTTATCAGTTGATCACGACACCAGCTGTTACTCCTCAGCTGTTGAAAAAG
ACACCACGACAAGTAATGACAATGGACATCTCCAATTTTCGACCAATCGA
CATAAGTGAACTTCAAGTCGCCATGTTGGAAAAGCAAACAGATTTACCAC
AAGTCTCAAGGAGCGGTATCAACCCTTTGGTCGCTGACCCGGATATGGAT
ACTAACGGAATCGTCAATCCCGCAGCTGTTGAAAAAGACACCACGACAAG
TAATGACAATGGACATCTCCAATTTTCGACCAATCGACATAAGTGAACTT
CAAGTCGCCATGTTGGAAAAGCAAACAGATTTACCACAAGTCTCAAGGAG
CGGTATCAACCCTTTGGTCGCTGACCCGGATATGGATACTAACGGAATCG
TCAATCCCGCAGTTGCACAACAAGTGATCGAAGGGTTGATATGTAACCCA
CTGCACAGTGAAAGAGCATTGGAGAATTCCATACAACCCACTTTCTTCCG
GCTGCCACCTCCTCTTCATAAAGTGGAACAAGACGAGCTCTGCTGGATGA
ACCCAAAAGTTGCACAACAAGTGATCGAAGGGTTGATATGTAACCCACTG
CACAGTGAAAGAGCATTGGAGAATTCCATACAACCCACTTTCTTCCGGCT
GCCACCTCCTCTTCATAAAGTGGAACAAGACGAGCTCTGCTGGATGAACC
CAAAAGATGATAGTTTCACTTTCGAATGGGATACAATGATGTGTAGTGAA
AATTCTGCCGAAGTTGAAGTCAGGCAATTAATGGGAAAGGCTTTCAAAGG
AGCCCTCACCTTAACTCAACAGCAGATGATAGTTTCACTTTCGAATGGGA
TACAATGATGTGTAGTGAAAATTCTGCCGAAGTTGAAGTCAGGCAATTAA
TGGGAAAGGCTTTCAAAGGAGCCCTCACCTTAACTCAACAGCAGCAACTA
CTCAAAGAATTGGAGAAAGATAGTAAACTAGTCTATCACGTTGGTTTGAC
ACCGAGCAAACTCCCTGACTTAGTTGAGAACAACCCTCTGGTTGCCATTG
AAGTTCTCTTGAAAATGATGCAATCCTCGCAAATCACTGACAACTACTCA
AAGAATTGGAGAAAGATAGTAAACTAGTCTATCACGTTGGTTTGACACCG
AGCAAACTCCCTGACTTAGTTGAGAACAACCCTCTGGTTGCCATTGAAGT
TCTCTTGAAAATGATGCAATCCTCGCAAATCACTGAATATTTCTCAGTTC
TGGTCAACATGGAGATGTCCTTACATTCTATGGAAGTTGTGAACCGCTTG
ACCACAGCTGTGGATTTACCACAAGAATTCATCCACTTCTACATCTCTAA
CTGTATTTCTAAATGTGAAACAATCAAAGATAAATACATGCAATCGAGGC
TGGTACGATTGATATTTCTCAGTTCTGGTCAACATGGAGATGTCCTTACA
TTCTATGGAAGTTGTGAACCGCTTGACCACAGCTGTGGATTTACCACAAG
AATTCATCCACTTCTACATCTCTAACTGTATTTCTAAATGTGAAACAATC
AAAGATAAATACATGCAATCGAGGCTGGTACGATTGGTTTGCGTATTTCT
TCAATCCTTAATTCGCAACAAAAGTATCAACATCCAAGACATTGCGATTG
AAGTGAATGCATTCTGTGTGGAATTCAGTAGTATACGTGAAGCTGCTAGC
CTCTTCCGATTATTACGTTCTGTTGAAAACAATGAGGGTGGAGAAACGAA
CACTAGCGGTGGCAATAAAAGTGCAAATTCAAGTCCTACGTCTGCTACAG
GAAAGTAAGTTTGCGTATTTCTTCAATCCTTAATTCGCAACAAAAGTATC
AACATCCAAGACATTGCGATTGAAGTGAATGCATTCTGTGTGGAATTCAG
TAGTATACGTGAAGCTGCTAGCCTCTTCCGATTATTACGTTCTGTTGAAA
ACAATGAGGGTGGAGAAACGAACACTAGCGGTGGCAATAAAAGTGCAAAT
TCAAGTCCTACGTCTGCTACAGGAAAGTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045274XLOC_045274-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031_pilongenomesc0000031_pilon:332876..338685 -
Properties
Property NameValue
Aaloc1144-1365:223
Aaloc970-1143:1043
Aaloc823-966:1701
Aaloc706-822:2095
Aaloc559-702:2832
Aaloc370-555:3664
Aaloc139-369:4505
Aaloc1-138:5811