XLOC_045254 (mRNA) -

Overview
NameXLOC_045254
Unique NameXLOC_045254
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000031_pilon:1090727..1098121+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045254 ID=XLOC_045254|Name=XLOC_045254|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7395bp|location=Sequence derived from alignment at sc0000031_pilon:1090727..1098121+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAAAATAAAAGCTGTCGAATATTTATTTTCTCTATTTGTCATTGC ACTTCTAGTTCAGGTGAGATGATTATATGTGTTTTTAAATTCGTCAGGAT GAGCTGCGGATTTTTTAGGTGCTTTTTTAACACTATTTCGGTAGGGAATA AAGCCTGGTAGAAAGAAATCACCATGGCGAGTCTATTTCAAAACTAGATA CACTTTCATGGGAAATCTGTGAACGTTTAAGCCTATCTAGTGTGGAGAAT TTTTCGTAAAGTCTAAAGACTGACAAAGTCTTAATTtaagtcggccttaa ttattaatCGCTCCTAATTTTACCTTGTCACCTTATCAAATTTTAGttac taagggccgactaattaccctgagtatcagaggttaagttttcaaagaat atattaacctctgaagaccaataatagaaattttatcacgcatgtgtcaa tcaatcactgtagaaagaagcaaagatgaagagcaaatattaccatatta atgtctagcagactgtatcagtatgcagtttactatttacgaattcccca gaatcCTTCAAGtttaattgaagtgagtttctttcgaaaaaaatctttta cctgatccccaaatgtataacagtaattactaaactattaattattgaaa tgtcactttaattgaatcgaaattaTAGATAAACtctatgttatgattct ctatcactgactctttttaaaaagcattgatgatattttttagttgtgtt ttcaacaacgggaataaaaatatcaactttgaacttcatccaagatcttg gttGGTCGTCACTGttcccggggggtactagggttgcgagctgacgggag ggtgccgcccaactttcgaaatttggacccttaccgggactaaaaaggag agaactaaagaaaattttgggaattttacgacccttagcgggacaaaatt gaccaattttgaccaaatttcgatctttcagggggtaaaaagttgaaatt ttcctatttttccgacccttagtgggactgaaatttgattttctgatttt tccgacccttagcgggacttttgaagtccaaaaaaggtacccttaagggc ggcacataccataccccccatttgcctaagtacccccccccccccgggtc atggttacttttgtctggGTTGATtacgcgctgaatagaatctcgattgg tcggcacagcgtcaatatatgatttcgacctgtgttTTTCAGGAtaccga ctaataattaagactgaccaaaaatttgggccatttctaaatttacaagc agatggaaaataggagaaattacttaaaatactggaaaataaggaaagct taattataaactttcaatttggcccaaatttttagtcggcccaaagtttt agtcggcccttattttagtcaccaagccaaaatttagtcacttagggccg actaagttttggccgataaggtatgcaCTTTGCCAATGTTCCTCAGATTC CAGATTCAAATCTTTGATTGACTTTATAGATTACCGAAGGATCTGGCAAA GCTATTGTTCATTTTCTGGATTATCAGAACCCTTTATCAACAAAACTGAA TGGAGAATGTTGCAAAGCCCGTCCAAATCACCAAGAAACATCTCTGAGGA CTCCAACTAATTTACCAGACGAATCTGGTGTGAACAATAACACGATTACC AAATCAACACCTTTATCTTTGGTGAAGGAAAACAAAACTGTACATCAATC TCGAAGTCCAAGGTCAGCTCTGGCAAAACCACCAAGAACCAAAGAAGCAT CTCAACGACATGAATCAAATTTGGGAAGCATAAAACAACAACATTGCACA TCCGCCTGTCATAATGTCTTTTATCTTTGCATTTCTGACATTACTGGCAA GCCACCTTGTGACATGGTTCAATTAGATAGTCGAAGAATCGATTCTGATG ACATTGAATTTTCTGGTGATGAAAGAGATACTAGGATGGCGTATCCTTTT AATTACACTTTCTATAAATGGAGTGTAAGTGAATTCCTATCCATGATAAG CACCAtcgcaatgtcttctgacattacattacGGACCCAACATCTAATTG GTTGTAAAATCGGTCAATACgtcttttcaaccaatcagctgtcggGTTCG TGGaatgcaatggtgcatatcatgaattgcaaTTATTAGTAAACATTAGA ACTCTCTAAAGCTAACAATTTAAGTTTGCGACTGAAGCCATTCCATCTTT TGGATGTCTGATTCTTCAAATGACCCTGGACCATCACTTAAAGTGAAAAG CTATACAAGAGGGGATTTCACTCCATTTTCCATTAGCTTTAGGGCTCGAA GCAACAAATCTTCGGCGTGCCTCCGCTCGACCATTTTCCCTAGGAGTCGG TTTGTTATTGGCAAATATACTTCGAAATCAAACAGTGTACTCGTTAACTG ATTTTACCTTAAAAAGTCCATTACAGAAGCTGCTTTCAGAGTTTCGAAAG AAAAGAGTCAAATTTTACATATACTGTAAGGTAATTTGATCCATTACTTT TTAGGGTCAAATTGAATTAGACGTTATCGTTCTTGACGGAGCTAAACACG CAAAAGATCTATCCTATACTATCAGTTCAAACAATGTGAAAACCATCAAT ATGACAGATACAATCGCCACATTCTACATGAGACGTCAAATCTCAGCATA CAGCAAAGACGAAGAATCTTGGATCAAAACACAATTAGTTAGCCATAATA ATAAGACATTAGATTTGAGAATAAAGTAAGTTGACAGTTTCGTTTGTACG TTTGGTTCTCTCAAACTGACATTTCTACCATGTATtaccacacccctgtc tcacagccccggcggaacttttttcctcagttgggATAAAagttcctatt gaaatcccaatggtgatagaaatttgattgttccaattccagtggggatg ggtttggagtgcaattgttaaacatttaatttcgagtggggataaaatct aagtcaatttcctagttgggctgaaattccagggtattttccttttgggg acgaaatttttgccaaattttccagtggggctggggtcccagcgggtctg tgatacagAGGTCTATTACCCTTTAGTCTTTTCACTCTGGAAGTGGAATA TTGACTAGCAAAACTCCTTTTCCATAACACGAAATCTTAAAACACAATTG ACgttaaacattcaaaaagtgatCCAGTGACTTTTAATCAAATCTacctt tcccagctggcacataacgttttatataacgtctatataacgttaaacgt ctatataacgttagatgaacgtctaaacaacgttgtgtgccaggaGAAAC TCATTCAATTTTcgttaaaattttaaacattttagagTATATTGTGATCC TGGCTATTATCCACCTGATTGTGAACGAAAATATTGTGTACCAGTGAACA ATGAAAAAGGTTAGATACATGGttgatttcattgattttaacCTTTATTT AATTGCTCACGGTATGGTGTGTTTTATGAACactccctcccccccccccc agcagcGAAGGCTCTGTttacgccatcacgccaaaaaaaacagttaaTTT CGCcattattaaaaaaagatttcttatcaatcaataatcaatcaGTCACG TGTATCACGCTTATTGAAATCATAGATCACACCATCACGCCAACTGCTAA GGTGACCTCTTGTAGAGCTCACCGACACACGCGTGTCTTCTGCAAGCCCG GTggaacaaccgttaaagtggggaggctaTATGCTCAAAATGACattaaa aaaatctcatttgctcaaaagtggggaggttGATGTCATCTCTTCCACCG GGTCTGTTCTGTGCTCTTTTTCATAATCTTGAAGAAAGGTTGAGTTATCA AAAGTGAAACAAACATTACTTAAAAACATCAACTTAAATAGTTCAGTGAT AGAGATTTTAAGTgttcaaatgaaaaattttggattagTTAATATATCCT TGATTCTTGTTCCAAACAGGGCACTACAATTGTACGCATCTTGGTGATAA ACAATGTTTACCAGGTTGGTCAAATATGACCAGTAATTGCACAATCAGAT ACTGTAAACCTACAAACGACTCCATCAATGGTCATTATGCCTGCTCTGAG AATGGAACTAAAATCTGTTTACCAGGTTGGATTAAACCAGAATCGAATTG CATCATTAAACTCTGTCAGCCTTCAAATGATACTAATGGTAATTTTGTAT GTGATCGAAAAGGCAATAAGGTTTGCTTGCCAGGCTGGGAAAATACTTCA AAGAATTGTACTATACGTTATTGTGAGCCGAGAGATGACAAGTCTGGACA TTACAATTGTGGTGAAAAAGGCGAAAAATTATGTTTGATAGGTTGGGAAA ATCCTGATAGGAACTGCACTATTCATTTTTGTCAACCTCAAAACGATTTA CTTGGACATTATAAATGCTCTGAAAAAGGTGAGAAGATTTGTTTGGCTGG ATGGACAGATTTAGATTCAGATTGCACAGTGAAAGTATGTGAACCTAGAG ATGACGAATATGGACATTATTACTGCGATGATATTGGTGATAAAGTCTGT TTAAATGGTTGGCTGAATACCACTTTGAATTGTTTAGTGAAAACTTGCAC acccaaaaatgattttactggACATTACAAGTGCTCAGAAATGGGTGACA AAATTTGTTTAGATGGTTATGTGAATCCTAGCTTAAACTGTACAATCAAA GAATGTCATCCACAAAACGatgatgaaaatggtcattACTCTTGTTCAAA GACAGGAATTAAAATGTGTATGGGAGGATGGACGAATGAGGGATTGAATT GTACAGTGAGGTTTTGTGAAGCACAAAATAGCACGGATAAAGGACATTAT GTTTGTGATGAGAAAGGCAAGAAGATTTGCTTGGAAGGATGGATGGATGA GGAAAGCAATTGTACCATCAGTAAGAAATATAATCCTCATCTCTGTAACC AACTTGGGACCCACCTCAAGCATCCAGCCCATTGGGAATTCTTTAACCTA CTTCCTCGACACTCAacactgatttttttttcgatattgACCCATAagaa ccccttctcacagaaccaCTGGGAACACTTTTCACTgtaaaaattgtcca aaatatcatcccctGTGGGAAATTATGCaacaatttttgtccccgctgaa aataatcaaataagccaATCCTCACTACAAATTATTGTGCTTATTTTTCA ATCCCCACTGTATTTTGtgacttaaaaacaatggaATCTAATTCCCCAGT CATATAAAATATGGGAATTTCaattcccatcgagtttcaattggttattt ttaaacccactggctgaaaaatcctaccgggtctgtgagaagggggtgta aaaaacgaagaaacttgaaaaattggaaagttgaaaaTCTTATAGTCCGT CCTCACAGGTTATTTTTCAGAGAAAGCTAAACTGTGATGCTCATGGTATA AGATCCATAAAAACATCTTCACAGTATATTCCCTTAATTTAGAAGAGGAA TTACCACCATTTAAATACAACAGAAAACCATCATTGAAACGTTCGACATC GGTTGATAAAGAGCACCCTGCAGCATACTATGCGTTTATTAGTGTTCCTA TAATTGTTATAATAGCTGTCATCGTAGCATTATCAAGGTAGGTAaccttt ttgcactttttgatcAACCCTCTTCGAATAACAGTCTCAAGAAAAggaac cccggggggggggtactaggtttgcgaggtgacgggtatgtccgagccaa aaatcgaaaatcgaccctttgagagacaaaattttggtgattttgggacc ctttgagagactttttcctaaattttggtccattttttccaaattttggt ttgattttcaccaaattttggtcaaaattcttggaaatcgtgaccctttg agagagaaatttttgatttttgtgattttgggaccctttcagagactaac ttttgaatttgtacccctttgagagacttttgaggaacgagaaaaggtac ccttatggctcgcacatacccggcacccattttgcctaggtacccccccc cccgggaaaggAACCTTTCAAAATATAATGAGTTCAGCTTAACTtcgtta aagggacataacagtacttgcgaaatttgtaaacaaactgtatgcagcgg atacaaaatcaaaacaaatgtcacatgtcaaaataaaaaatcaaaccaaa tatggctagtttttattgttcaattgttttacaagtttgttttggacacg tgattttcattgttctctttaatgacacgtggtttgcgcaatgtttacat tttactactgtaatgtccctttaagtttATGAGTAATTTTGGTTATCATT GTATCCAAacttacttaaaaaaaaaaaaagtctattcacgataagtgtgc actcttttttcatttacctataatttttgaaggaattcttcaatctttat aaatttggtatcatttgaaagatataagtgagtggaacaatttgaaataa aaaaaacttaaaacttcataaaaaaatgaagatgaaaatgaagaagaaaa aaatgaagatcttttagaaaagTGCTGCacagtgcacacttatcgttttg agtgagggggccaacgttttggaaaaaatgtgggcgacgaagaaaatctT TCACTGTTTAcgccctcaaaacaccttaaaacaaTATCTAAAGTGGGGGG CCCATAGACATTGAGACATGCGCAAAATGATTCTGTCTGTAGTCACAGGT TGttttttttGAAGGATGAATTCTCGAGAAATTCTAAGCGACATCCCTGT ATCGGTGAACCGGTCAGATTCCGGTGGAGAAAATCACCAGCCCCGGTGGG ATAGTGAGTTAAACACGGTCAAAGTTTATGGAAATCCTCTATTTCGATCA AAACTGGGATTTATGGTCTACCCGGTCAATAATCGTACTGATAGATCACC CCAGTTCAAATTGCAAGAATGAAACATTTAATGAATTCTAGGAATAAAAG CGTGAAGTTATTTTTCCTACCCCAGTGAAAATGAGTTAAAATATCTCACC CCAGTGAGCTTTTGAGATCTCAAAATTAAACCCAgtaaaattttactatt ttcatagTCAACCCTAAAATTCACAGGGTCACTGAGAAAAGGGGTGTTAA TCTATTTTTAACTATTATTCTTCATTTAGGATACGTGGAGCAAAATATGA CAAATTCGAAAATCCTCAAGATGGCTTCCCTATGCAACAGACTAGTATGA CCCTAGATACAGCTGACATCAGCATTTATGGTTCAAATCGCTATCAATAC AGAGACCATTATTCAGATACGAACTATCTTGTAGAAAGTTTATAA

Coding sequence (CDS) from alignment at sc0000031_pilon:1090727..1098121+

>XLOC_045254 ID=XLOC_045254|Name=XLOC_045254|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4230bp|location=Sequence derived from alignment at sc0000031_pilon:1090727..1098121+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAAAATAAAAGCTGTCGAATATTTATTTTCTCTATTTGTCATTGC
ACTTCTAGTTCAGATGGGAAAAATAAAAGCTGTCGAATATTTATTTTCTC
TATTTGTCATTGCACTTCTAGTTCAGATTACCGAAGGATCTGGCAAAGCT
ATTGTTCATTTTCTGGATTATCAGAACCCTTTATCAACAAAACTGAATGG
AGAATGTTGCAAAGCCCGTCCAAATCACCAAGAAACATCTCTGAGGACTC
CAACTAATTTACCAGACGAATCTGGTGTGAACAATAACACGATTACCAAA
TCAACACCTTTATCTTTGGTGAAGGAAAACAAAACTGTACATCAATCTCG
AAGTCCAAGGTCAGCTCTGGCAAAACCACCAAGAACCAAAGAAGCATCTC
AACGACATGAATCAAATTTGGGAAGCATAAAACAACAACATTGCACATCC
GCCTGTCATAATGTCTTTTATCTTTGCATTTCTGACATTACTGGCAAGCC
ACCTTGTGACATGGTTCAATTAGATAGTCGAAGAATCGATTCTGATGACA
TTGAATTTTCTGGTGATGAAAGAGATACTAGGATGGCGTATCCTTTTAAT
TACACTTTCTATAAATGGAGTATTACCGAAGGATCTGGCAAAGCTATTGT
TCATTTTCTGGATTATCAGAACCCTTTATCAACAAAACTGAATGGAGAAT
GTTGCAAAGCCCGTCCAAATCACCAAGAAACATCTCTGAGGACTCCAACT
AATTTACCAGACGAATCTGGTGTGAACAATAACACGATTACCAAATCAAC
ACCTTTATCTTTGGTGAAGGAAAACAAAACTGTACATCAATCTCGAAGTC
CAAGGTCAGCTCTGGCAAAACCACCAAGAACCAAAGAAGCATCTCAACGA
CATGAATCAAATTTGGGAAGCATAAAACAACAACATTGCACATCCGCCTG
TCATAATGTCTTTTATCTTTGCATTTCTGACATTACTGGCAAGCCACCTT
GTGACATGGTTCAATTAGATAGTCGAAGAATCGATTCTGATGACATTGAA
TTTTCTGGTGATGAAAGAGATACTAGGATGGCGTATCCTTTTAATTACAC
TTTCTATAAATGGAGTGGTCAAATTGAATTAGACGTTATCGTTCTTGACG
GAGCTAAACACGCAAAAGATCTATCCTATACTATCAGTTCAAACAATGTG
AAAACCATCAATATGACAGATACAATCGCCACATTCTACATGAGACGTCA
AATCTCAGCATACAGCAAAGACGAAGAATCTTGGATCAAAACACAATTAG
TTAGCCATAATAATAAGACATTAGATTTGAGAATAAAGGTCAAATTGAAT
TAGACGTTATCGTTCTTGACGGAGCTAAACACGCAAAAGATCTATCCTAT
ACTATCAGTTCAAACAATGTGAAAACCATCAATATGACAGATACAATCGC
CACATTCTACATGAGACGTCAAATCTCAGCATACAGCAAAGACGAAGAAT
CTTGGATCAAAACACAATTAGTTAGCCATAATAATAAGACATTAGATTTG
AGAATAAAagTATATTGTGATCCTGGCTATTATCCACCTGATTGTGAACG
AAAATATTGTGTACCAGTGAACAATGAAAAAGagTATATTGTGATCCTGG
CTATTATCCACCTGATTGTGAACGAAAATATTGTGTACCAGTGAACAATG
AAAAAGGGCACTACAATTGTACGCATCTTGGTGATAAACAATGTTTACCA
GGTTGGTCAAATATGACCAGTAATTGCACAATCAGATACTGTAAACCTAC
AAACGACTCCATCAATGGTCATTATGCCTGCTCTGAGAATGGAACTAAAA
TCTGTTTACCAGGTTGGATTAAACCAGAATCGAATTGCATCATTAAACTC
TGTCAGCCTTCAAATGATACTAATGGTAATTTTGTATGTGATCGAAAAGG
CAATAAGGTTTGCTTGCCAGGCTGGGAAAATACTTCAAAGAATTGTACTA
TACGTTATTGTGAGCCGAGAGATGACAAGTCTGGACATTACAATTGTGGT
GAAAAAGGCGAAAAATTATGTTTGATAGGTTGGGAAAATCCTGATAGGAA
CTGCACTATTCATTTTTGTCAACCTCAAAACGATTTACTTGGACATTATA
AATGCTCTGAAAAAGGTGAGAAGATTTGTTTGGCTGGATGGACAGATTTA
GATTCAGATTGCACAGTGAAAGTATGTGAACCTAGAGATGACGAATATGG
ACATTATTACTGCGATGATATTGGTGATAAAGTCTGTTTAAATGGTTGGC
TGAATACCACTTTGAATTGTTTAGTGAAAACTTGCACacccaaaaatgat
tttactggACATTACAAGTGCTCAGAAATGGGTGACAAAATTTGTTTAGA
TGGTTATGTGAATCCTAGCTTAAACTGTACAATCAAAGAATGTCATCCAC
AAAACGatgatgaaaatggtcattACTCTTGTTCAAAGACAGGAATTAAA
ATGTGTATGGGAGGATGGACGAATGAGGGATTGAATTGTACAGTGAGGTT
TTGTGAAGCACAAAATAGCACGGATAAAGGACATTATGTTTGTGATGAGA
AAGGCAAGAAGATTTGCTTGGAAGGATGGATGGATGAGGAAAGCAATTGT
ACCATCAGGCACTACAATTGTACGCATCTTGGTGATAAACAATGTTTACC
AGGTTGGTCAAATATGACCAGTAATTGCACAATCAGATACTGTAAACCTA
CAAACGACTCCATCAATGGTCATTATGCCTGCTCTGAGAATGGAACTAAA
ATCTGTTTACCAGGTTGGATTAAACCAGAATCGAATTGCATCATTAAACT
CTGTCAGCCTTCAAATGATACTAATGGTAATTTTGTATGTGATCGAAAAG
GCAATAAGGTTTGCTTGCCAGGCTGGGAAAATACTTCAAAGAATTGTACT
ATACGTTATTGTGAGCCGAGAGATGACAAGTCTGGACATTACAATTGTGG
TGAAAAAGGCGAAAAATTATGTTTGATAGGTTGGGAAAATCCTGATAGGA
ACTGCACTATTCATTTTTGTCAACCTCAAAACGATTTACTTGGACATTAT
AAATGCTCTGAAAAAGGTGAGAAGATTTGTTTGGCTGGATGGACAGATTT
AGATTCAGATTGCACAGTGAAAGTATGTGAACCTAGAGATGACGAATATG
GACATTATTACTGCGATGATATTGGTGATAAAGTCTGTTTAAATGGTTGG
CTGAATACCACTTTGAATTGTTTAGTGAAAACTTGCACacccaaaaatga
ttttactggACATTACAAGTGCTCAGAAATGGGTGACAAAATTTGTTTAG
ATGGTTATGTGAATCCTAGCTTAAACTGTACAATCAAAGAATGTCATCCA
CAAAACGatgatgaaaatggtcattACTCTTGTTCAAAGACAGGAATTAA
AATGTGTATGGGAGGATGGACGAATGAGGGATTGAATTGTACAGTGAGGT
TTTGTGAAGCACAAAATAGCACGGATAAAGGACATTATGTTTGTGATGAG
AAAGGCAAGAAGATTTGCTTGGAAGGATGGATGGATGAGGAAAGCAATTG
TACCATCAAAGAGGAATTACCACCATTTAAATACAACAGAAAACCATCAT
TGAAACGTTCGACATCGGTTGATAAAGAGCACCCTGCAGCATACTATGCG
TTTATTAGTGTTCCTATAATTGTTATAATAGCTGTCATCGTAGCATTATC
AAGAAGAGGAATTACCACCATTTAAATACAACAGAAAACCATCATTGAAA
CGTTCGACATCGGTTGATAAAGAGCACCCTGCAGCATACTATGCGTTTAT
TAGTGTTCCTATAATTGTTATAATAGCTGTCATCGTAGCATTATCAAGGA
TACGTGGAGCAAAATATGACAAATTCGAAAATCCTCAAGATGGCTTCCCT
ATGCAACAGACTAGTATGACCCTAGATACAGCTGACATCAGCATTTATGG
TTCAAATCGCTATCAATACAGAGACCATTATTCAGATACGAACTATCTTG
TAGAAAGTTTATAAGATACGTGGAGCAAAATATGACAAATTCGAAAATCC
TCAAGATGGCTTCCCTATGCAACAGACTAGTATGACCCTAGATACAGCTG
ACATCAGCATTTATGGTTCAAATCGCTATCAATACAGAGACCATTATTCA
GATACGAACTATCTTGTAGAAAGTTTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045254XLOC_045254-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000031_pilongenomesc0000031_pilon:1090727..1098121 +
Properties
Property NameValue
Aaloc1951-2115:7231
Aaloc1807-1947:5545
Aaloc856-1803:4022
Aaloc781-852:3387
Aaloc559-777:2555
Aaloc64-558:1530
Aaloc1-63:1