XLOC_045126 (mRNA) -

Overview
NameXLOC_045126
Unique NameXLOC_045126
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000015_pilon:2767426..2771762+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_045126 ID=XLOC_045126|Name=XLOC_045126|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4337bp|location=Sequence derived from alignment at sc0000015_pilon:2767426..2771762+ (Clytia hemisphaerica_ch_hm2_pilon)
atgggaaacgaaaagaaacagaagtttacagaaggtgaaaaagTGCTTTG
TTATCATGGACCCCTTTTGTACGAggcaaaaattcataaattaaaaacaa
aagatcGTGTCACCAAGTTTTTGGTTCATTATGCTGGATGGAACACCAAA
TGGGATGAATGGGTAGCGGATAGTCGTGTCATGAAATATAACGATGAAGG
ACTGAAGaagcaaaaagaattgaaacaaCATCATTCGTATGTATTATCCC
TTCCTATGCAATCACAATGTAACTGTTATTTTTCTTTGTGCCCACCAATC
CACTTTCAAGTTCATCAAGGGTTCACATTTACAATCTACTTGTGCTCTGC
ACAGTCAATTCGTCGACTTTTTGTCTTATCTCTTGCATTCGTTGCGCTTG
GAAATATGATTTGGTATTTTTCTCTGGATATAAGATCATTTGAATAGCTT
TCTGTCCATACATCATGAAAAAGATAACAAAAGTGTTTATGGCCACGGtt
aaattctgataaatctcTTTGTCAGTAAAACTTTGAAATGGAATGATGAT
AAACATGACGACAGACATTACGGTTGTCGCGAACGAAGCATACACCAAGG
ACATACCGTCGTTCATAACACTTGGTAAATGTCGTCCACGAAACGCTTGA
ACAAAACAAGCAATCTGTATGAACATAACAAATCCAATGATTATATTACC
ATGAAAACTGGTACTACATTGGTAGATTCTTTGCATGGTCGAAATTTCCA
GATTAAAAGAGAATGGTTGCTGTATCTGGGAAGTGATCACCACCAATGAA
TTACCAAAGATGAGCAAAGTGATGATTGTGATGATTTGCAATGTGACTGT
CTCTTTTGTGTCTTTCTCTGTGATAGGGATTTTACTAAGAAAAGCTTGAa
caattttttgtgatttgataAACACGAGGCTAACATTCAAAATATAGCCA
ACACTGATAGAAGCTAATCTTACCATACACACTATTTGAGATGGTCTTGC
AAAATGAAGAGTAACCATAAAAGTGATGGTTATGAACTGAACTGATAAAT
GTACAAATGTCACTTTGATGTCACTGCTGATGACAACTGGAGTTCTTTTT
CTTCTCCAAAATAACACAGTGGTTAAGGAAATTGCCAAAATGTTAACGAT
AGCTGCAGCAAGAAGAATCTGGAACAACTTTTCCCTAATAAAATTTGGGT
GTGAATCAAAGTAGGGGTCAATGCATTCTGTCCGGTTTCCATTGTCAATA
CTAAACTTTCCTCGGCATGGTATACATTCGTCATCATTATCACCAACAGT
TAACTTGTATTGATTGACGGGACATAAAACACATCGATATCCATAACCTC
CGTCTATTTCACcatatattttatatttgcCTTGTCCACAAGCCAATTGT
GGACATTCATTATGGATCGGTCTAAACGATATATCTGAAAAAAGAGCCAA
ATTTGTTGGATTGAATCTGTACCAATAATAagtattgatttttttgaata
aagaaacGTGCTCGTTACGATTTCTGTTTTTGGCCCGAAGACGGTCCACA
TTGTATAGGCGAAGTCGTCCAGGGAGTGGGTCTGGTTTCGCTAAAATAAT
AAGAATGTTTACATCGATGATTATATCGTTTGAAATGTCTGTAAAAGGAT
ACAACATGTATGTTTTTAACTGATAGATTTTTGAGATGGTTTTTCGGGTA
ACACCATACTGCAGCAATGAGCTGTTTTTTGGTAAccatttttctcttct
tctttgGTCAAAGAGAGTAAAGTAAGTCCTTGGATAGAATTGCCAGTCGC
GGTACTGGTGCCCCATTGTTTCATGTACTAGAATGGGGACTTTTGCTTCA
TCATATAGATCTTTCAGATGTCTGAGAGTCTCCATAGAAACGGCATGGTC
TCCAAATAATACGATTGCTGGTCTTCGGTGATCTTTAAGCcactttttgc
tgaaaaaaattCTGTTAGTTCTAATTTCATTCATGGAGATCGTATGCAAC
TGCATACATCGGTGCTGTTCTTTGAATCTCTCGATACTCAAGTTATAATA
AGTGTCATAAGGCGAGAATATCGGGTTTGCGGTCTCCTTGTCCTTCAACA
ATACCAAGAAAAGGTCTTGCCATTGGAACTTTTCCACTATCTTTGACAGG
ACACAAGAATTCGAACTCTACTGGGATATGGAGGCCGTTTCGAAGATTTG
GCGATTCTAAGAATCGTACTGGTATATTGGTGAAAGAGAGTGTTTCAACT
ATATACAAACTCATTTCTGTTGGTAGATGGGTGATGACGGAAACAATTTT
AGATTCTTGGTACGATGTCGATGGGTTCTGGATAACCCATGTATTATTAA
GGAGAACTTCTATCAACAAAAGTTTCAAGCGCTCTGGATCATTGCAtaca
tcaaaagtttcaaatcgTATATTATAGTGTTTGTTATAGTGTTTGTTATC
ATTGATGAACTGTTGTGTTTTTAGTTGTATTTCGCGTTGCATCTCTGTCA
CCACTTCTTTGAATGTTCCAGCATCTTTATTTCGTTCAGTTTGATTGAAA
GAGGGCTCGTTAGAACAGATAGAAAATATACCAACAATGTAAAATGTATC
TGATGAAGTATTTGACAGGTGAAAAGTCGTTGCTGtcaacaagaaaaata
aaaggaCAATTCCCTTCGCCATAATATCACACAATCGCAGAACTATCTCA
AGATTCTAGATTATCGTTTTAAATAATGTatcgtttttttaaatttctgc
aGGAGATCCTTCTTATGTTATTCTaatcaaaatttccacctgCACGGAAA
ACTTCTCTAATTAGCGATTTTGAATgggaaaatttgatttcatttttgat
caaaacttATTTGTTTTATAATTCGATAATGATAATGGAAAGCTTTTCTA
TCATCTCCCTATCAAGatggaaattaaaaaacaacTGTCACCCCTGTTAG
CCTAGTCGGGTAGCCAAATATTACTTCTCAATAGGCTTGATGGTATGATA
AAGTTGCCGGGTGTTATATGACAGgcttcattttttgattttgtcacttt
gaccttttttgctttacaagtattatgggtttttattttattatctcATT
GTATTGCACCATTTCCGGGggcaaatgaccccattttggagatctactct
tcaagttCTATCAGATGGTACAatcagtttttataaaaaaaggaatttca
agAATTGATTTTCCAAGGGTCTGTAGGCCAAAATAACCTCTCCTTTCAAG
GCTAcatagaaaaattttaaagggcCGGCGATTTGCATAAATACTTCGCT
GCTGTGCAACCTTTCGCAAGatatagtgtttttttattcagACATAAGAT
AACTCATACCATACGTGAAAGACTTGCGCTGCTTCGCCGATGCGTCAAAG
TTGCGAAGCAGTATTATCCAtgctaaaatatcattttatatGATTAGTTT
TACATCAGAAATTGCCAGCAGCGCCAGCTTGGCAAAAGCCAGCTTGGCAA
AAGCTGGTTTGGAAGTCCCGagggaccatataatgagaaataaaaataaa
aatccataTATACTACTTGTCAGGGTCAACCAAGACCGCCACCGGGCTAT
TTCAACAGTCTCTTTTCTCgaacttttggtaaaatttggcaATAATCTGC
ATTCTGTTGCTAGTTAAGCATTAattctttttctatttgtttAGATCGTC
ACGTaaaggaaagaagaaagattcaAAAGACGACAAACCAGATACTCCAG
TGCCTTCTAAACGAAGAAAAGGACGTCATGCAAACCAAAATGATTCTGAA
CCTTCCTATGTACAAAAAATGGAAGTCAAAATCATCATACCTCAGGATTT
AAGGCGTTTCCTGTTAGATGATTGTGATTTTGTGACACGTCAAAAGCAGT
TGGTGCCATTGCCTAAACCCGAAGAATTAACATTGAAAGCAGTCACTGAT
CGATTTTTTAAGACGAAGGAAGAGGGTGGAGAAGATGGTAAACTATCGGG
AAGTTTTAGCGAAGTGTGCCGTGGTATTTGCgaatattttgatgttatgc
TCGGCTCGCAATTATTGTACAAATTTGAACGAACTCAGTATGGAGATATT
TTGAAAGAACATCCTGGTAAACCGTTGTGTGAAATATATGGTTGTGAACA
TCTATTAAGGTTGTTTGTTAAGATGGGCACCTTTCTGTCTTATAGTTGTC
TGGATGAGGCCAGTATGGAATTTGTTGTCAGTCACATCCATGATTTCTTG
GAGTTTATGACGAAGCAAGCCGATGATCTCTTTTGTGCCGAATATGAGAA
TTCTACTCCAGATTATCAACGACGTACAAACGTATAA

Coding sequence (CDS) from alignment at sc0000015_pilon:2767426..2771762+

>XLOC_045126 ID=XLOC_045126|Name=XLOC_045126|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1758bp|location=Sequence derived from alignment at sc0000015_pilon:2767426..2771762+ (Clytia hemisphaerica_ch_hm2_pilon)
atgggaaacgaaaagaaacagaagtttacagaaggtgaaaaagTGCTTTG
TTATCATGGACCCCTTTTGTACGAggcaaaaattcataaattaaaaacaa
aagatcGTGTCACCAAGTTTTTGGTTCATTATGCTGGATGGAACACCAAA
TGGGATGAATGGGTAGCGGATAGTCGTGTCATGAAATATAACGATGAAGG
ACTGAAGaagcaaaaagaattgaaacaaCATCATTCatgggaaacgaaaa
gaaacagaagtttacagaaggtgaaaaagTGCTTTGTTATCATGGACCCC
TTTTGTACGAggcaaaaattcataaattaaaaacaaaagatcGTGTCACC
AAGTTTTTGGTTCATTATGCTGGATGGAACACCAAATGGGATGAATGGGT
AGCGGATAGTCGTGTCATGAAATATAACGATGAAGGACTGAAGaagcaaa
aagaattgaaacaaCATCATTCATCGTCACGTaaaggaaagaagaaagat
tcaAAAGACGACAAACCAGATACTCCAGTGCCTTCTAAACGAAGAAAAGG
ACGTCATGCAAACCAAAATGATTCTGAACCTTCCTATGTACAAAAAATGG
AAGTCAAAATCATCATACCTCAGGATTTAAGGCGTTTCCTGTTAGATGAT
TGTGATTTTGTGACACGTCAAAAGCAGTTGGTGCCATTGCCTAAACCCGA
AGAATTAACATTGAAAGCAGTCACTGATCGATTTTTTAAGACGAAGGAAG
AGGGTGGAGAAGATGGTAAACTATCGGGAAGTTTTAGCGAAGTGTGCCGT
GGTATTTGCgaatattttgatgttatgcTCGGCTCGCAATTATTGTACAA
ATTTGAACGAACTCAGTATGGAGATATTTTGAAAGAACATCCTGGTAAAC
CGTTGTGTGAAATATATGGTTGTGAACATCTATTAAGGTTGTTTGTTAAG
ATGGGCACCTTTCTGTCTTATAGTTGTCTGGATGAGGCCAGTATGGAATT
TGTTGTCAGTCACATCCATGATTTCTTGGAGTTTATGACGAAGCAAGCCG
ATGATCTCTTTTGTGCCGAATATGAGAATTCTACTCCAGATTATCAACGA
CGTACAAACGTATAAATCGTCACGTaaaggaaagaagaaagattcaAAAG
ACGACAAACCAGATACTCCAGTGCCTTCTAAACGAAGAAAAGGACGTCAT
GCAAACCAAAATGATTCTGAACCTTCCTATGTACAAAAAATGGAAGTCAA
AATCATCATACCTCAGGATTTAAGGCGTTTCCTGTTAGATGATTGTGATT
TTGTGACACGTCAAAAGCAGTTGGTGCCATTGCCTAAACCCGAAGAATTA
ACATTGAAAGCAGTCACTGATCGATTTTTTAAGACGAAGGAAGAGGGTGG
AGAAGATGGTAAACTATCGGGAAGTTTTAGCGAAGTGTGCCGTGGTATTT
GCgaatattttgatgttatgcTCGGCTCGCAATTATTGTACAAATTTGAA
CGAACTCAGTATGGAGATATTTTGAAAGAACATCCTGGTAAACCGTTGTG
TGAAATATATGGTTGTGAACATCTATTAAGGTTGTTTGTTAAGATGGGCA
CCTTTCTGTCTTATAGTTGTCTGGATGAGGCCAGTATGGAATTTGTTGTC
AGTCACATCCATGATTTCTTGGAGTTTATGACGAAGCAAGCCGATGATCT
CTTTTGTGCCGAATATGAGAATTCTACTCCAGATTATCAACGACGTACAA
ACGTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_045126XLOC_045126-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000015_pilongenomesc0000015_pilon:2767426..2771762 +
Properties
Property NameValue
Aaloc238-879:3696
Aaloc1-234:1