XLOC_044955 (mRNA) -

Overview


Name	XLOC_044955
Unique Name	XLOC_044955
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000002_pilon:3388150..3395282+
coding sequence from alignment at sc0000002_pilon:3388150..3395282+

mRNA from alignment at sc0000002_pilon:3388150..3395282+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_044955 ID=XLOC_044955|Name=XLOC_044955|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7133bp|location=Sequence derived from alignment at sc0000002_pilon:3388150..3395282+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGcagagaatatttttgttagtGCTGGTCGTTGGATTGGCAGCTTGCCA
TCGAAGGCATAAAGGTAAGGAATTTTGAATGATTAGTATTTTTGAGCACT
GTACTATGCAATTTGTTTTTAAGGAAACACCCACTTTGAAAGAAACATAA
TCGGGTGCAAGAATTAGACAAAAGTAAGGGTAAGACATCACTTCCTGGAC
TAAATATTCACATTCCATAGACTTTGTCGGGACATTTCcgctgttttttt
taagataacCGGCCGAAAATTGTAAAGGgttttttccagattttcttTAT
CAGATTGGATGATGCTCGCCGGATATTTAGTCtttttttCGCTGAAGAAT
AGCAGTGGAATTTTAGTCCGGAAAGTGAATGACAAGTGAATAACAATttc
gttttataaaaaaattattttccttcaTTAGGGGGCAAAGAGAGATGGAG
AGAGACAAATGAACGCTTATCATTCCAACTTCCAAACGGTAATGACttaa
atttcatgaaatattttgatcaaaatttaaaaacgaagtactggaaaata
aattttccatcTGTTAGGTCGATTTCTagcgttttcgagcactttctgaa
agtaactttttcatttaatcgagtataacttttgatctaatgaatcggaa
ttttaagatttcgagaaaattagtctCAAAGAGAGGCGtaccccccgggg
gggggggggcactcgatctgaaatcgaccatacgttcggcccaaaatttg
gcttctaaaatcggacccttacagtgcagtgaatttccatgaaaaaatca
taccctttcagtgcactttttaaaaatttctcgcccgtaagggcgaaaat
ttttgcaattttccaagaaaatgtggaaattctcctccaaaattgaccaa
ttttgtgataattttaccaaaaaattggccttttaccaaaatttcctacc
cttacagtgcagttcagtgcagtcttgtaatttcatacccttacagtgca
ctagctgaactatgaaaaacctacccttaagggccgaacgtctggtaggt
catttaccttgagtgcccccccccccgggcgtacCCGCTACTTTTTCCTA
AAGTCAAAGTTTCATCGATTACAGGATATTTGTTGAATCTCGTAAATCAA
GACAAATTACTATATAGATAAAATTAATCTTCCCTTACAGAATGTAAAAT
AGCTATCCATACCAGCGATGAAACATGTCAAAAGGATAGACTGACCGATA
TTGCGAGGGCTCGATATTGGTACATACTTTCAAATGAAAACACCAACATT
GATTTCCCTTTGGCTCATGAAATCCCATGGTTGGCCCATAACTTAACGGC
GGTTAATTACTATTACGCATTGGATCCATTCGAATCGCGATACATGGTAC
TTCTCAGCACCTGGATTTCCGCTATTATCACCACAATTACGCCAGCCATA
ACCAAGGCTTTCGCAGGTGTCTCTTTCGAGTCCAACCAAGAGTATGTTGC
GTGTTATGGTGCTTTCCAGAAGGCCATACAGGTACCAGGCCTAAAACTTC
TTACAAACGTAGTACATGAAGCAAAGGACTAAGGTCGTTTAGAATTCATG
TAATACAGAAATATGgatgttatatgataatacaataCTTGTTAAGGGAT
ATAATATTAGTTTGTATACAATTGACTATAATTTGTATACcatcattttt
ttgcttattttctaaaatgtctgaattagtcgtagcatagaggtcaatag
acctgcgaaatatattgctataaaataaaatgcTAGACTAAGGATAATCA
GGACTGGATAATATGAAGTTATGTATGATTTATAATGACAGTTTATTATG
aagcttaaccctattagccccaagcttttttgacttttgtatccccaggg
gggggggtagaatctaccaccgtcgattattttcgatctagaagagctat
ggccatgaaatttggtacagatgttctccatcatgatacaattttccagg
aagaaaaaaaaatttgattaagtcattcaaaaactgatgacgtcatcaca
aaatttcaacctgtcggaaaaaagcccaaatatatggtttacaaaaatgt
atattacagtcgaaccaataaagatatttcaattatgtttgaagattctg
aaagataaaagactgttctttaacataattgccggtttcgCAAATTCCAT
gaagagtttttcttaaaatctatgctgaagatgagtaaaattttcaaaat
ttgatgacgtcataaatgatgacgtcagcattttcaaaaattttctttta
attttttaaatttgtattatcaatgcctatcacgtgtcaaaatttgaaaa
tgattgaataaatagtttagaagttatcagcactttaaaattttgagttt
taagcgatttaagctgggttttatgtcatgtttcacaataaagtcataaa
acctgatctggacaacctatgaccctaaaattatGCACAAGTACTcgtaa
taagattttattaaaagtcagaaagtttcaaatcgtttgaaaaatttttc
tccgagatataaacaaaagaactccagcgtggtagattctacccccccct
ggggctaatagggttaagaagACTCCACTTTGGAATTTGTTTATGGAATC
CCATTCTCAGTaaaaaaaGATTCCTTTCACAGTAtaagaccacgttcaca
cgctacgtTCCGTTTCGTTCCAAAACGAAACGATTCCGAAACactgtgtg
aacgtcaaaattggaaacgtcaaaaaagcagacgttacaaagcaaaacag
atcgaaacggtttcgctccgcTATTTTCattggaacggaactgctccgtt
ttcttgctccgaaacgttccgaaatgaGTATGAGCACTTCCTATCCGTAA
CAATTACCCAACAAATACCACACCGGAGCGATACGAAagcgtaacgtctg
aacatggtcttagattTAATAAAAACTTCTGTATTTTCAGGCGCTTCAAG
CCCCGCAATACTTTGGCAATCCTGCAGAGTATCCCGACTTTACGGATCAC
ATCACCAATGGTTATTACCTGGAAGACGATGCGTTTGTTCAACGAAGACT
TGCGGGACAATGTCCTTTCCTCATTCAAAAAGTCATCACTGAGGGTAAAA
AACATCGCACATACGTTTGactcttgctaattcgaactatagaaataatt
tttaactGTTTTCCTCTTAATcggattatagaaagattcgaataatataa
gatcgaattaaagagagccGGCACTGCAGTGAAAGATATccgaaagggtc
ccaaaaaaggAAACATCTGACGAAAATTGAacacaaaatttcatcttttc
acatcaccatttcttttgttctctctgattttcatttttcaaatttcctg
attcattATCCTCATTTATTGACAGGTGAGAGAGGGTTCAAGCTGGACGA
TTTGATGCCTATGTTGAACCAAGACTTTTTTGAGACGTTCGAGATGAAAT
ATTCCGATGAAATGGTCACCATGGAAGAGGTATTTAATAGACTAGTTTAT
AATCCTCGTAAGACAGTGAATATGGGTAGTGTATGATAATAGGATGGTTG
TTAAGGGGTAACATTAGTTTTTATAAAGTACTATTATAGACtaaaataga
ccttatcggagttttctatttttctaaaaaagcgaggaattcctaagaga
tttctattgtaatacacttgaaacaatcccacaatgcatcgctttttcag
aaaaatcaaaaactccgataaggtctatttgtCCCTTCTACTATCTTTTG
GTGATTTTCTACAGTGTCCGAATTAGTTTTCTCCAGTCGTTTGGTACCTT
CAATCATACATCAGAGTCTTCATGTAgctcaaatttctttaaagtttaAA
TACATTTTCCGAGCCTTCAGTTAAAGTGAAGTACTCTCTGAactagtctg
attcgcagacctaaACAAACCACAGATGTGAATACCAGCAGCCTTTATCT
GTTCTACATAACAGTTTTGCGTACCCTGCATGTGTTTGGGTTCTATTAGA
CTGGcgcgccagtcgggctggaacggtatcacacGGGAGAAGTGAGCGCA
GGAGTTAGGTAAgtgtaggaagaaattttgtcggcggcaagggctgaaag
ctgttaatcagcagcctctcagcAACTTTTACttgttctcctacgcagct
cctatttcAGCAAAcgccgccgcctttatgttcccactctctgacatgat
taatcaacagactagtttgctagtctagggTTCTAGAAAAGGAGCTATAT
GGTTCACTAAAGTTCATATCTTAAAGGATCTTCCTTTCTGTTTCAGGCCA
TCAATCATCACCGTCTGTTCGTCCTCAATTTACCGAACATGAAGGACATC
CAGAATGCACCGGACGCTCACGGTGATCTGTACACCGACCGTAAACTCTC
TCCTCTCACTTCACCGATCTCATTCTTTCTGTTGGGAGATGATGGTTTGT
TGAAACTGGTGGCCATCCAAAGATATCCCAAATCATGTAAGTAGACCTTT
TCTTTTAGCTGAGCGAGACCAATCTTTTCTTTTCACCCTCTAAATTAACA
GCTATTCACTTCCTTTTTAACGTTGTCGTTAAGCATCAAcgtctttgaag
aaaattgaaaatatcagTACTTCAAATTCCTTATCGTTCCAGCTTCTGAA
GTGTACACACCATCAAGTGAAAAGAACATCTGGTCGTTGGTCAAAGGAGA
AGCTGAGCTCGCATCTGACATGTactgtcaatcaaaaattcacttAGGAG
GCGTTCATTTCGTGTCCACCATCTATTGTTTGTCCTTTAGACGACATTTA
AGCACCAAACACCCTCTCTACGATTTCTTTAAATACCATTGCGAAGGGAC
TGTCCCTCATATCACCACAGTCTTCGGGACTTTGACCACCCCCAATAGTT
TGGGTAGCAAGCTTTACGGAATGGGAAGTGAAGGACTCGTCAAATTAGCC
AAACAGAGTTATGATGAGAGAAATTATGAACACTCCACCTTCGACTTCTT
CATTAGggtatgtatttttttctacttaCTTTGGAGTCTATATGACACAC
AGGAACACTACTTTGTTCGAGTCACGGAAACTTTTAGATAGGGAACAAAG
TTTAATAGGCATtgattgttaactgaagggacaagaaaacttgttcgagt
gaaggagacattcgagttgtacAGGTGAGAGTTAAAAAGACTCGATTCTG
TATACgtaaactttatttttaggaaagtCTCGAGGTGTAGTTTTTACCTT
TATAGCGGTAATCGAAAAGAGGGGTAAATCACCGCACTCCATAGCATAGT
GAGCTCATTGTGGATATATAGATATGGTTAACCCTAGAATATGCTAtcgt
ctaagacaaatcaccatctaagaaataagcccaaagctgaagaaaattcg
caaacaggcttttttgctgaaaagagtTTACAACTGGTAGAGTTTGtcag
tcttcgaaactctcccgccgatttttttctgtataccgccataacgccaa
aCCGCCCTATTTTCCCGCTTTTACTATCACTGtagacgataacatcgtct
aggtTAACCCTCGCCAACCTTCTTTTTGTTTTACCAGGGTCAAGGTTTAG
ACGATACTCGAATCAAGTATTACCCTTTCCGTGAAGACGCCATTACATTG
ATGGGAGAGTTCAACATCTTCATTGAAAATCTTCTGAGGCGTTATTATGG
ATCAAATTCTCATCGCGTCCGCGCGGACAAAGAATTGCAATCATGGGTGA
ACGAATTGTCCATTGATGGGAAAATTCAACCTGATGGCGGAAAAGGAAAG
GTGAGAGAGTGAAGTCATTTGAAATTTATCCCTAGTTTTTGACGTCTAAG
AATTAATTAGTCACAGAAGTGAACAATGAATCTGTCAATTGTTTTTAACT
TTGGACTACATCACAGAAAAATAGGGAACTTTACCGAGAAAACTTAATTA
CTACTTACCACAAGTCCTGAAAATTGTTCTTTCGATTCAACGCTGGATGG
TTTACCAGCAAATCAACTTGTGATCTCTAAAGACGAAAATTTATCTAATT
TATCTACCTTTATCTAATTCCCTTTTTAGGTCATTGCTTTCCCTTCATCT
TTCCGTTGGCGAAGTCAGTTAAAGACTTTCTTGCAACGTTTCATGTGGAT
GAACATTTTTCACACGTCAGCAAATTATTACACACACCGAGATTTCCTAC
CAGCTTCTCCAAGTAAATTTTACGAACTGAACAATGGAACACAGCTCCCT
TATCTTCAAGCACTCTCTGGAAAAGCATACAATGTTGTAAGTACCTTTTG
TTGTAGTTAATCTAAATGATAAACTTCTGGGCAACCATTTCTTTGGGATA
TTTGTAATTACAACTTTCAGTCCTTTCTGctactaaaatttgagaaaaga
aaCAACACAATTTTAATGATTTCGAAATTCAAACTCTGAGTGCCATAGTC
GTTTATAATTCATCTAATACAGTAATATGTGTCTTACATGATAATTACGA
TAATTGTTCCTGGATAAAACCGGTATCAGTTTGTCTTAACGACTgcaatt
tgttattttttgcttatttctctttactatgtctgaattagtcatCTAGC
ATACTACATTATAAGTGCCcaactactctgtaccagaaaGTAacggggtg
gtacagtcactttcggtcggggttgtggacggcgaaatatgtcgttttta
tgaaatttgtcgttctttttgtctatttttagtaatgcaggattctttag
ataaacccctcCACTCACGTTTATCATTTCTacggaattttgaaattagt
ccGTAGATATCCGGTCTGTATTTAAACAACtacgatttttttcttatagG
AATATATGAGATTCGAAGGAATGTTGAACAATTTCCGAGTGAACAGAATT
TTCTCATACTGGAAAGACATCACAAACCCGACATACCGACGAATTGTGCG
CAAAGCTTTTTATCGTTTGAACACCATCGTCCAAAAGAAGTTAGAAACAA
GAAATGCTGAACGTAAAGCCAAAAATCAATTGGGTTATCAAATCATGGAA
CCAAAATGGCTGACGAATAGTATTCATATTTAA

Coding sequence (CDS) from alignment at sc0000002_pilon:3388150..3395282+

>XLOC_044955 ID=XLOC_044955|Name=XLOC_044955|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3858bp|location=Sequence derived from alignment at sc0000002_pilon:3388150..3395282+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGcagagaatatttttgttagtGCTGGTCGTTGGATTGGCAGCTTGCCA
TCGAAGGCATAAAGATGcagagaatatttttgttagtGCTGGTCGTTGGA
TTGGCAGCTTGCCATCGAAGGCATAAAGGGGGCAAAGAGAGATGGAGAGA
GACAAATGAACGCTTATCATTCCAACTTCCAAACGGGGGCAAAGAGAGAT
GGAGAGAGACAAATGAACGCTTATCATTCCAACTTCCAAACGAATGTAAA
ATAGCTATCCATACCAGCGATGAAACATGTCAAAAGGATAGACTGACCGA
TATTGCGAGGGCTCGATATTGGTACATACTTTCAAATGAAAACACCAACA
TTGATTTCCCTTTGGCTCATGAAATCCCATGGTTGGCCCATAACTTAACG
GCGGTTAATTACTATTACGCATTGGATCCATTCGAATCGCGATACATGGT
ACTTCTCAGCACCTGGATTTCCGCTATTATCACCACAATTACGCCAGCCA
TAACCAAGGCTTTCGCAGGTGTCTCTTTCGAGTCCAACCAAGAGTATGTT
GCGTGTTATGGTGCTTTCCAGAAGGCCATACAGAATGTAAAATAGCTATC
CATACCAGCGATGAAACATGTCAAAAGGATAGACTGACCGATATTGCGAG
GGCTCGATATTGGTACATACTTTCAAATGAAAACACCAACATTGATTTCC
CTTTGGCTCATGAAATCCCATGGTTGGCCCATAACTTAACGGCGGTTAAT
TACTATTACGCATTGGATCCATTCGAATCGCGATACATGGTACTTCTCAG
CACCTGGATTTCCGCTATTATCACCACAATTACGCCAGCCATAACCAAGG
CTTTCGCAGGTGTCTCTTTCGAGTCCAACCAAGAGTATGTTGCGTGTTAT
GGTGCTTTCCAGAAGGCCATACAGGCGCTTCAAGCCCCGCAATACTTTGG
CAATCCTGCAGAGTATCCCGACTTTACGGATCACATCACCAATGGTTATT
ACCTGGAAGACGATGCGTTTGTTCAACGAAGACTTGCGGGACAATGTCCT
TTCCTCATTCAAAAAGTCATCACTGAGGGCGCTTCAAGCCCCGCAATACT
TTGGCAATCCTGCAGAGTATCCCGACTTTACGGATCACATCACCAATGGT
TATTACCTGGAAGACGATGCGTTTGTTCAACGAAGACTTGCGGGACAATG
TCCTTTCCTCATTCAAAAAGTCATCACTGAGGGTGAGAGAGGGTTCAAGC
TGGACGATTTGATGCCTATGTTGAACCAAGACTTTTTTGAGACGTTCGAG
ATGAAATATTCCGATGAAATGGTCACCATGGAAGAGGTGAGAGAGGGTTC
AAGCTGGACGATTTGATGCCTATGTTGAACCAAGACTTTTTTGAGACGTT
CGAGATGAAATATTCCGATGAAATGGTCACCATGGAAGAGGCCATCAATC
ATCACCGTCTGTTCGTCCTCAATTTACCGAACATGAAGGACATCCAGAAT
GCACCGGACGCTCACGGTGATCTGTACACCGACCGTAAACTCTCTCCTCT
CACTTCACCGATCTCATTCTTTCTGTTGGGAGATGATGGTTTGTTGAAAC
TGGTGGCCATCCAAAGATATCCCAAATCATGCCATCAATCATCACCGTCT
GTTCGTCCTCAATTTACCGAACATGAAGGACATCCAGAATGCACCGGACG
CTCACGGTGATCTGTACACCGACCGTAAACTCTCTCCTCTCACTTCACCG
ATCTCATTCTTTCTGTTGGGAGATGATGGTTTGTTGAAACTGGTGGCCAT
CCAAAGATATCCCAAATCATCTTCTGAAGTGTACACACCATCAAGTGAAA
AGAACATCTGGTCGTTGGTCAAAGGAGAAGCTGAGCTCGCATCTGACATG
TactgtcaatcaaaaattcacttAGGAGGCGTTCATTTCGTGTCCACCAT
CTATTGTTTGTCCTTTAGACGACATTTAAGCACCAAACACCCTCTCTACG
ATTTCTTTAAATACCATTGCGAAGGGACTGTCCCTCATATCACCACAGTC
TTCGGGACTTTGACCACCCCCAATAGTTTGGGTAGCAAGCTTTACGGAAT
GGGAAGTGAAGGACTCGTCAAATTAGCCAAACAGAGTTATGATGAGAGAA
ATTATGAACACTCCACCTTCGACTTCTTCATTAGgCTTCTGAAGTGTACA
CACCATCAAGTGAAAAGAACATCTGGTCGTTGGTCAAAGGAGAAGCTGAG
CTCGCATCTGACATGTactgtcaatcaaaaattcacttAGGAGGCGTTCA
TTTCGTGTCCACCATCTATTGTTTGTCCTTTAGACGACATTTAAGCACCA
AACACCCTCTCTACGATTTCTTTAAATACCATTGCGAAGGGACTGTCCCT
CATATCACCACAGTCTTCGGGACTTTGACCACCCCCAATAGTTTGGGTAG
CAAGCTTTACGGAATGGGAAGTGAAGGACTCGTCAAATTAGCCAAACAGA
GTTATGATGAGAGAAATTATGAACACTCCACCTTCGACTTCTTCATTAGg
GGTCAAGGTTTAGACGATACTCGAATCAAGTATTACCCTTTCCGTGAAGA
CGCCATTACATTGATGGGAGAGTTCAACATCTTCATTGAAAATCTTCTGA
GGCGTTATTATGGATCAAATTCTCATCGCGTCCGCGCGGACAAAGAATTG
CAATCATGGGTGAACGAATTGTCCATTGATGGGAAAATTCAACCTGATGG
CGGAAAAGGAAAGGGTCAAGGTTTAGACGATACTCGAATCAAGTATTACC
CTTTCCGTGAAGACGCCATTACATTGATGGGAGAGTTCAACATCTTCATT
GAAAATCTTCTGAGGCGTTATTATGGATCAAATTCTCATCGCGTCCGCGC
GGACAAAGAATTGCAATCATGGGTGAACGAATTGTCCATTGATGGGAAAA
TTCAACCTGATGGCGGAAAAGGAAAGGTCATTGCTTTCCCTTCATCTTTC
CGTTGGCGAAGTCAGTTAAAGACTTTCTTGCAACGTTTCATGTGGATGAA
CATTTTTCACACGTCAGCAAATTATTACACACACCGAGATTTCCTACCAG
CTTCTCCAAGTAAATTTTACGAACTGAACAATGGAACACAGCTCCCTTAT
CTTCAAGCACTCTCTGGAAAAGCATACAATGTTGTCATTGCTTTCCCTTC
ATCTTTCCGTTGGCGAAGTCAGTTAAAGACTTTCTTGCAACGTTTCATGT
GGATGAACATTTTTCACACGTCAGCAAATTATTACACACACCGAGATTTC
CTACCAGCTTCTCCAAGTAAATTTTACGAACTGAACAATGGAACACAGCT
CCCTTATCTTCAAGCACTCTCTGGAAAAGCATACAATGTTGAATATATGA
GATTCGAAGGAATGTTGAACAATTTCCGAGTGAACAGAATTTTCTCATAC
TGGAAAGACATCACAAACCCGACATACCGACGAATTGTGCGCAAAGCTTT
TTATCGTTTGAACACCATCGTCCAAAAGAAGTTAGAAACAAGAAATGCTG
AACGTAAAGCCAAAAATCAATTGGGTTATCAAATCATGGAACCAAAATGG
CTGACGAATAGTATTCATATTTAAGAATATATGAGATTCGAAGGAATGTT
GAACAATTTCCGAGTGAACAGAATTTTCTCATACTGGAAAGACATCACAA
ACCCGACATACCGACGAATTGTGCGCAAAGCTTTTTATCGTTTGAACACC
ATCGTCCAAAAGAAGTTAGAAACAAGAAATGCTGAACGTAAAGCCAAAAA
TCAATTGGGTTATCAAATCATGGAACCAAAATGGCTGACGAATAGTATTC
ATATTTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_044955	XLOC_044955-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000002_pilon	genome	sc0000002_pilon:3388150..3395282 +

Properties


Property Name	Value
Aaloc	1696-1929:6900
Aaloc	1489-1695:6130
Aaloc	1276-1488:5638
Aaloc	913-1275:4695
Aaloc	721-909:4347
Aaloc	619-720:3428
Aaloc	463-615:2991
Aaloc	124-462:1193
Aaloc	67-120:434
Aaloc	1-63:1

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XLOC_044955 (mRNA) -