XLOC_044833 (mRNA) -

Overview
NameXLOC_044833
Unique NameXLOC_044833
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000022_pilon:536155..544758+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044833 ID=XLOC_044833|Name=XLOC_044833|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8604bp|location=Sequence derived from alignment at sc0000022_pilon:536155..544758+ (Clytia hemisphaerica_ch_hm2_pilon)
CTAGTATCGACTACCACACTTAACATCTACGAGTCATTTGTTCGCTTCCA ACCAGTTAACATCCACCAGAACGACCAAGGGGACATAAGATTACGTGAAG ATAAATCTTCCATACACGAAATGGACACAACACTCAGTGTCTCTTCTGCT TCGACAAATGATTTTCCCGATAACTTTAGCATGATGACAGATTCATCTGT GTTCTCAAAGAAGGTAGGCATTTCTGGACATTTGATCGTTTATGATAAAA GATTCTCTTCGCTTAATAGTTGACGTCGTTACAcgattcttttataaaaa cgaCCAAAATCTTTTGATGCCTTCgggttcttaactttttgagttttaag cctaaaaatgttcttaataagTTCTTACTTTCAccgttttttgagtattt ttgtccgttCTCCTAAAagtcgggtgttttagagtctgcaaagccttaaa atattgtTGTATCCACTGAAGCCTCATGTCCTGATATAGTtcgttcttat acaaaaaattgTATTGTCGAATTTCTCTGATCTTCGAATTCGAAGTCTCA TCGCCTTTTATTgctgtgtttgtttgtttgtccaGAAAATCTATCACCAT CTGGTTTCAGTGGTTTTTAAAAGGGTATGAGAGAAGAATgttaaaaaatc atttgtttgGTAACGGTTAATATATTGGTCAGATACATAATATCATTTGT ATTCACCTTTGTCTCTTTTATACAGAGTGTCACAAAGGaagtttcatttt cactttGGATACAATTCACCATTCCTAAAGTGAAATTATCAATGTCTAGC AACTTTGAAATGTCTGGTTGGTGTTATCATTTGATCTCTGACCTGGATGA ATTGACTTTCGCTTTCGATTACCAAGACACAACGTTGGAACTGACCAATA AGATTTCTTCACTTTTAGTATACTATTCTGCTGAAAGGTAACTGCGagac ttttttgagttttagctcacaagttttcagcactttcaatttttatgttt tatcaagaaatcttttttatatttttcgatttttgataaagtttttgttc cattttagttttttgggttcagttataattttgACAAAGAACAGACAGAA AAACatagtttcaaccaatcaaatttcgtactAGCCTATTGCATTTCGAT TTCGTTGTTGTGATTATTCCTGTATACATATAAACTTCTTTATAATTTTT AGCACCGACGAAACAAACCCACCATCATCAAAGAAAGGcatcattttttg tcaaaaagaaaaatcggAGGCTTCACACTCCAAATCATTCCTTTCATTGA CTTACCGCCGCTCTAAACACCATTTGACGCCCACGCCCACCTCCACCCAC AGCAAGCTCGAGGACACAGACCTTAAATGGACATTCTTCGGTCCAATAGA AGACTCGATATCAAAACAAGAACTCGAAATCTTCATTCAATCTTTTGATC TTGTCTTGATTGCTAACCCAATCATTTCAACAATGCATATTTTCGTCAGC TCATTGAAAACCTTCCTGGATCGATACCAGAACATCCGAACACCTACACT TAAAGAACCATCAGATCGACCACACTTCGCCAGCAACTACATCAATGTCT GGCCCATCATCAACATCAAATGTGGAGATATTCGGCTCATTGCCCCTTCC CAGCATATCACCTCGCTTTCCAAAGATGAGCTGGTTCTACTCTTACATTT TCAAGCAATCGGGATTTCATCCCAACCCATTAATCCGATTCGGAAAACGG TTGTCAATAGAAACTATTATAAACGTTTGAAAGAAATGTATCGGGATTcg ttgaaaaagaagaagctgTGGAATGTTCAATATCAGTTGGATATCACCAA TGTTGGTCTGTGTACAACTAACTGGAAGTCGGTGCAATTGACAATGTCAG ATGATATTGTACCAACAACCAGTCAAAATCCAGCAGTTGAATGGAACACT CAAGCAAGGTATACAGTTGTTGTCGTCTACCCCCCTACCTCAAGTCAATA TTTCTGTTTATTCGAACAAACCCTTAAACTTAAAAGTGTGAACAGTTTCA TGTGATTTAGAGAGAGTTATAGAAGAGTTATATACACTGAAGAAGATGCA AACTAGCGACTAACCATGACAATCTGTGATAAAAACCCAATATACATTAa ggaagaaagaaataaaaaaaaagtaaaaaacaaaaggaatgcACAAGACA CAAAAGGAAGTGATAAGTTGAAGACCGAAATCTGAGATCAGGTGCGGTAC CTTGAGTAAGCATCTCCTGCCACTCTAGAGTCACCTGTTAGCTtaacaag aagaaagaaattaaaacatagGCACAAGTAGATTTAAGTACAACAGAAAA GGAAAGGTTGAAAAGTCGGCCTAGAACCCGGTTTGGCGTCCTGTGCCCGA GCGGCCGCCTGTAAAGTTACGGGTTAACAACCCTAGCCTTCACATGTGCA ATTTTACTACTCAGTTTTAGTTTACTTGCTATTCAACCTATCATATCTTG TTATAAAAACACTTACTGATTGTGATAGTAGCTCTTGCTAATTGAACCAC AAGTCAATCGGGTTATTtggttatttttttgttatataaGATTTTGTGAC ATTTCACTTTTAGTACTCACGCACCACGGTTGACAGCTATCTTTGTTGGT TTCGATTTGAATGCAACATTCGCTCCTTCCATTCTCACTTTCCATGGCAA TAAGGTAACGTAATTCCACGTTCTtccgaaatatttttactttcttCTTT TGACGAGAGAACTTAAAGGACAGCATCTTATGTATcttctattctattct atttCCGAGCTGGACtgacctgagatcagattgtggttgttttctgtcCA CCACACTGAAGCTTTAAAGgaatgggtgaaaacataacaatctgacgaat atacaatctcgaaatcgtaagaaccgcgttcgtctaaaaggactggggat gacaaaaaagttgcgtgattgtgtttatgaatagggcgccgtatcagttt ttgactttctggcgcacaacaagattcttgttgtaaaattttgcgTGGGA GGACTATCTTCCTcagatgtttaatttttaagcgctttcagaggtttacc gtgtgCGTAAGAAAACtgtgaacagctgttatcaggttaagcTTGGCAAG GTCTTGGAATGACTACCTTTAGAATTTAAAACTATTGACTTGATTAGtac ttgtaatttttttttttaccagcGATAAATTAAGAACAAACAAATAAATG AAATTAATCATTcccttacacagcatttttaaattaaagaaagagCATTT TTCGCCGCGCCGAAATACTTTTctttattctgctttgtcagccgGAGGAG ACTTAGGCAAAGTAGCCCCCTCTCCTCCGGGATTAGCTaaagaatctttt tcatttATGCTCGAGGCGACATAAGTcgttctttctttctttaaaaaaat gccGTTTAAGTAAATGGTAGGAAATACGTTATGACCTttagaaataatta ttttttattatctgGAAAGCAGGTGCTGGAAAAGCAgaataaagaataaa ataatttgTGCTGGATATGTGCAGATGaaaagggtcggttttttctcctt ccaaagttaaaaatcagaaaattttaaaatagtttctctaagggtcggaa aatacatgattttttaggaaaatcttttgatttcgagggtaaaaattgta aaaaagtctaaaggtaagatatttttcaaaaatcgaagaaaattttcaga aattttcaaaaaaggtccaaCCACACATATAATCCTCTTCCGTCAACCCC AGTAGTACCCCCTCCGGGCAGTTAATTtagttaccttatcggcccttttt acgccagcccttattagggccggtgttaaaagggccaaaattttacaatt tttacctaaaagcggcgttattttttgaccatttttttacaatttaaagg attttaggcatgattaaaTGATGAAAACTATCCGtttttttACTCTATAT CCAaaacttcacgaaaatcaatgattttcattGGAATTTTCGACAGTTTA ATACcgaaagatgacattttaatgtaaattttagtttataatTACGGTTT TGAAGCCGGAGtagcgatttttacaagttttggcgttatttacggcccaA ATTGgtgtaagcccaaaattaggctgtggtgGAATAAGGggcggcgtaaa aggggccggcattaaattagggccggcgtaaaaagggccgataaggtaat tttGCCTCAATGATACCATACTAATAAAAAGAACATCGAACATCGCTGCG TTGCGTGATGTTAACATGGTGGAAAAAGCTACAATCTAATCTCCATCCCC TCTCTTCGTAAGTAGCAATGTCGAAGGGCCCGTCCATTGCTACTGGAGCC GGGTAATTTCTAGCGATTTCCAATGTTTTTCATATAAATAAATGTTCAAC ATTGCCAATCGTTATACTATTGTGGTATTAAGTTAATGTCTTATACTCTT TgcgatcttttgaaagaattcaCTGCAATCTTCCGGAGTTTTTTGTCTTT ATACATGTAAATGCAAGGGTTGGCACAACTATTGCCAAGAAAAAACACAT TCGTAACTTGATAAAGGTAACCTTCATTCGTGACACCAAAGGAATAACAA GTGATGGAGAAAAAAGTGAGACTTATACACGCGAAATAGACACCGATCAA CCATAGTGCACGCCGCACCAACTTGTTGGAAATACGCTCTGTTGCCAGGT TATTCGATTCTTGTTGGACAGTTGAAACGGCCATTTCCTCTACTTGTCTC CTGGATTTCTTGAAGACATGCAGTATCAGTGAACAGAATACGGGCAAAGC TATCAGAGTGATTAGAGTTCCTATGAATGAGAGAACGTTGATTGTCCAGA CTAGTTCTTTGTCGACCTGAGAAGGCGTGAACGCTATCAATGGTAAAATC CAGCACATCAGTATCATGGCTCGTAATCGTTTTGCAGTTATAACATTTTC GAAAGTGCTTGGTCTTGATATCTTCAGATATTTGATCGCGGCTAACAACA CGATGGTTAAAGACGAAGTCGAAGTTAAGCTTAAAACCAACATGCCGAAA AGCCTGTTGGGGAACGAGTCAAATTCGTCGAAGGTCCAAAAGTTTAACCA AGGATATCCAGGGTAAACAGTGATTGAAACCAAAGCATCACAAACAGCAA GTGATAATAAAATCAGATCAATCTCATCTCGGTCGTTTGggttttgatac tttttataaatactGAGGATGGAAATGACATTCCCAATGCCACCAAAGAT TGTCATGAAACCATAACAGACAGTGAAAATGATACGAAATGTAAAAGGTA AACATACTCCACACATAAAGCTGATATCCATATCTCTTGTAACACAGCTT GACAGGACTATTTGATGATTTTCCAAACCCTTTTTCAAGTGTTCGAATGT GGAAATAGTAGAGATGTTTCCCTTTTTGGCAATCAGTTGAATGTACTATT TGATGAATTTCCAGATCCTTTTTCAAGTGTTCGAATTGAAATAGTAGAGA TGTGTTTCCCTTTTTGGCCATCAGTTGAATGGAACACTCAAAATCGTATT TCTACaatataaaagtgaaatctcaaaatgaaatcaggatattcattttc atattttaataaTGTTCaaaaaaaGGGGAAGGGGGTTACATTATTTCTCG ATATTGTCATTATTGCCAATCAGGACCGGTAAATTAGTCTCTTTAATATA GCACTATGGTAGATGATGGAAATTACAGTCCTTTTATTCACGatcatttc aaaaatcttttcatcaCCGTCTTATCATTATTATTTAGTACTTATTCGTT GTTTGGACCATATGCAAGTAATTTGTATATTCTCATTCCAGAAAATTAGT TGAACTAATAaataaagtctattcacgataagtgtgcgcTAAATTTAGCT TTGCTTGTTATTTGTCAACCAATGcttcaatcttaaaaagtttataaaga aatagaaatagaaatataaTTACCCCGGAATTTTACATTgtgtaagaaat ttttcttatctAAATAGATAAGACTCGATTATTcattttgaaacgaaaaa aatgTATACGGTGAGTGCTAAATTGATCGAGTCAAGCGAAATCAAAGAAT AATGGCCGTCAAAGTAGTGAGCCAAACCAAAACGAGATTAGAAGACCAAT GTGAAAAAACCTGCCTCCGGCGGTCTTTCATAACTAGACGGtgcccggcg tcgcacgccggttaagctgtagctgaacgtaCTAAAAGTCTTTTGGATGT TGTCTAAACCTAAGATAcatcatatcttccttcgtttcgagcgtaaaact cctactcttcgggctatgagcactgctcttgttttgaatattgaaattct ccagataaatcgcatgcgcactgaggttttaatgaaataatagagagttt cgaaacctaagccaatcagctgtgttttaaacattcttttatttaaaatc tctattgataaacatcttttgtgaatgttgtctattatgtttaaacctat taataagcaattcccggtgggggtcactaatggccgcctatagcagtgcc tatagaccaagagtaaggcctaaaagcctggatctgtctattctgtctaa accaggctctatccgatctatcaatcaaaacaaacttatcgagaacaatc gaaaacgaaagtgagacacagaaaacagacatacagactagctgctatta atatatagagaAAAGTTTACAATCTAAACCTTACAAGGATTAGATTGGCC ATAGAGCTTCAAAAAATACTTGGCTGTCTTTATTATTGGAAGTCCTATGA CAATTGCAATCTCACATATTCTCTGAAATAGATTTTTTGCAAAACTGATC AATAGTTAAATTTCTATCTGATATGACTCGCTCCAAAAGCAACCACGTCT TCTCGAAGTGTCATCATTAAACATATAAGCTGTTTTAATGAGCGTTTATT AGTCATTCGAATGGCCTTTAAGTGTACTGTATttggactgttgatatctg atGAAAGTACTGACATTACGAGTCCCACACAATTTATGTAGGTCTTCGTT ATCAATGACTAATTGAAAGTCATTATTGGGCTGTTCCACGaaaaaaaCCA TACAGAGGGTGGACCTGGGTGgtcgaaccttttcaagtcaaaaaaaatta ttaaaaatgtgtggataatccctggaaaatggcaaaatttgcaaaaatac ccattggaaaaattcttttcgtaCCTTAAAGCGAGGGTGGACAAACTAAT ATTAGTCTCttaacccctggaaattttgaaataactttttacccccttgg aacaccccctggaaattcttctcagaTTACCCTCTGGGAATGTTTACCCC CATGTATGGATATGAAATGATTCCATTTCTTTTATCCATACATACCCATT GTCAGTGCCCACTTGTTTGAAGCCATTTCGAAACATGCGtctcaaaaatg ttctttacgTAATGTCTAAACCTGTTCAATTGACTTGTGCTTAGACACCA ATACTGACATGTATATGTCAGGCGACTTCGTACAAAACAATCCAGGAAAG AAACACGAGTTCGTTTAAGTTTACGTGGAACTTTTTGCAGGAGATTTGAT AATTCAGCAAATTTTACACAAGCTAATTAAATACGTTGACTTACTTCACT ATCTCCTGTGCTGGGTTCTTTACAGTTCATGTAGGGCCCGAGGTATCGAA TCACGttgacattttttcaaattaaaacctTTGAGGTTGACAATAGACGg tatctttgaaaattcttaacagggcaattcgcgaaagtttatactcacga aaaattctcaaaaaaattggtaatctataaaacctcgaaatcgaaatgaa tatctttttttttctcagatggAGTTCATTACGTCATCAGCTGTCGAGTT TCATTCTCCGAGGCCCATCGAGTTTCATATCAACACATTacaggtaaaaa aaaattctacgaTTAAGTTTGATgtgatgaaaagtaaaattaattttaca gttgagtctctataactcgaacccacACGGGGGTTAAAAGctaaggaaat ttcaagttatggagaaaCGTTTACGAGGCATTGTTAACCAAAGGGACAAG AAAACTTTTTATACTTAAGGAGaatcgagtaatagaggttcgaattaaag agactcCCGTATATGGATTATACTTCGAAGCTTTAGGACAAAGgtatttg actttttctttactAGTAACCATGGTCTGttggtaaaattttctttcttt tcagttgacattgggctattccagaaatagtctgtacccgtTTTTTGAAT GATAGAATCCAGCATGGTCAGTAAAATCGGGTTGAAAATaatccaagggg gtcctgaaaaatgggaaaaaatcactttaaatcTCCTCAACATAGGCGGT ACAAATTTTTTATGGATTAGCACATTTTACCCTTTAAAAGGCAAACAGCT CATTATTTATCTTCATTTATACCTAGGTTAACTTGATAATGCAATTATTG GCGCAAAGTGGTTTCATCGTTAAAGACATCTCAAGCCTCTTCACTGAAAC TTCG

Coding sequence (CDS) from alignment at sc0000022_pilon:536155..544758+

>XLOC_044833 ID=XLOC_044833|Name=XLOC_044833|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2850bp|location=Sequence derived from alignment at sc0000022_pilon:536155..544758+ (Clytia hemisphaerica_ch_hm2_pilon)
CTAGTATCGACTACCACACTTAACATCTACGAGTCATTTGTTCGCTTCCA
ACCAGTTAACATCCACCAGAACGACCAAGGGGACATAAGATTACGTGAAG
ATAAATCTTCCATACACGAAATGGACACAACACTCAGTGTCTCTTCTGCT
TCGACAAATGATTTTCCCGATAACTTTAGCATGATGACAGATTCATCTGT
GTTCTCAAAGAAGCTAGTATCGACTACCACACTTAACATCTACGAGTCAT
TTGTTCGCTTCCAACCAGTTAACATCCACCAGAACGACCAAGGGGACATA
AGATTACGTGAAGATAAATCTTCCATACACGAAATGGACACAACACTCAG
TGTCTCTTCTGCTTCGACAAATGATTTTCCCGATAACTTTAGCATGATGA
CAGATTCATCTGTGTTCTCAAAGAAGAGTGTCACAAAGGaagtttcattt
tcactttGGATACAATTCACCATTCCTAAAGTGAAATTATCAATGTCTAG
CAACTTTGAAATGTCTGGTTGGTGTTATCATTTGATCTCTGACCTGGATG
AATTGACTTTCGCTTTCGATTACCAAGACACAACGTTGGAACTGACCAAT
AAGATTTCTTCACTTTTAGTATACTATTCTGCTGAAAGAGTGTCACAAAG
GaagtttcattttcactttGGATACAATTCACCATTCCTAAAGTGAAATT
ATCAATGTCTAGCAACTTTGAAATGTCTGGTTGGTGTTATCATTTGATCT
CTGACCTGGATGAATTGACTTTCGCTTTCGATTACCAAGACACAACGTTG
GAACTGACCAATAAGATTTCTTCACTTTTAGTATACTATTCTGCTGAAAG
CACCGACGAAACAAACCCACCATCATCAAAGAAAGGcatcattttttgtc
aaaaagaaaaatcggAGGCTTCACACTCCAAATCATTCCTTTCATTGACT
TACCGCCGCTCTAAACACCATTTGACGCCCACGCCCACCTCCACCCACAG
CAAGCTCGAGGACACAGACCTTAAATGGACATTCTTCGGTCCAATAGAAG
ACTCGATATCAAAACAAGAACTCGAAATCTTCATTCAATCTTTTGATCTT
GTCTTGATTGCTAACCCAATCATTTCAACAATGCATATTTTCGTCAGCTC
ATTGAAAACCTTCCTGGATCGATACCAGAACATCCGAACACCTACACTTA
AAGAACCATCAGATCGACCACACTTCGCCAGCAACTACATCAATGTCTGG
CCCATCATCAACATCAAATGTGGAGATATTCGGCTCATTGCCCCTTCCCA
GCATATCACCTCGCTTTCCAAAGATGAGCTGGTTCTACTCTTACATTTTC
AAGCAATCGGGATTTCATCCCAACCCATTAATCCGATTCGGAAAACGGTT
GTCAATAGAAACTATTATAAACGTTTGAAAGAAATGTATCGGGATTcgtt
gaaaaagaagaagctgTGGAATGTTCAATATCAGTTGGATATCACCAATG
TTGGTCTGTGTACAACTAACTGGAAGTCGGTGCAATTGACAATGTCAGAT
GATATTGTACCAACAACCAGTCAAAATCCAGCAGTTGAATGGAACACTCA
AGCAAGCACCGACGAAACAAACCCACCATCATCAAAGAAAGGcatcattt
tttgtcaaaaagaaaaatcggAGGCTTCACACTCCAAATCATTCCTTTCA
TTGACTTACCGCCGCTCTAAACACCATTTGACGCCCACGCCCACCTCCAC
CCACAGCAAGCTCGAGGACACAGACCTTAAATGGACATTCTTCGGTCCAA
TAGAAGACTCGATATCAAAACAAGAACTCGAAATCTTCATTCAATCTTTT
GATCTTGTCTTGATTGCTAACCCAATCATTTCAACAATGCATATTTTCGT
CAGCTCATTGAAAACCTTCCTGGATCGATACCAGAACATCCGAACACCTA
CACTTAAAGAACCATCAGATCGACCACACTTCGCCAGCAACTACATCAAT
GTCTGGCCCATCATCAACATCAAATGTGGAGATATTCGGCTCATTGCCCC
TTCCCAGCATATCACCTCGCTTTCCAAAGATGAGCTGGTTCTACTCTTAC
ATTTTCAAGCAATCGGGATTTCATCCCAACCCATTAATCCGATTCGGAAA
ACGGTTGTCAATAGAAACTATTATAAACGTTTGAAAGAAATGTATCGGGA
TTcgttgaaaaagaagaagctgTGGAATGTTCAATATCAGTTGGATATCA
CCAATGTTGGTCTGTGTACAACTAACTGGAAGTCGGTGCAATTGACAATG
TCAGATGATATTGTACCAACAACCAGTCAAAATCCAGCAGTTGAATGGAA
CACTCAAGCAAGTACTCACGCACCACGGTTGACAGCTATCTTTGTTGGTT
TCGATTTGAATGCAACATTCGCTCCTTCCATTCTCACTTTCCATGGCAAT
AAGTACTCACGCACCACGGTTGACAGCTATCTTTGTTGGTTTCGATTTGA
ATGCAACATTCGCTCCTTCCATTCTCACTTTCCATGGCAATAAGatggAG
TTCATTACGTCATCAGCTGTCGAGTTTCATTCTCCGAGGCCCATCGAGTT
TCATATCAACACATTacagatggAGTTCATTACGTCATCAGCTGTCGAGT
TTCATTCTCCGAGGCCCATCGAGTTTCATATCAACACATTacagGTTAAC
TTGATAATGCAATTATTGGCGCAAAGTGGTTTCATCGTTAAAGACATCTC
AAGCCTCTTCACTGAAACTTCGGTTAACTTGATAATGCAATTATTGGCGC
AAAGTGGTTTCATCGTTAAAGACATCTCAAGCCTCTTCACTGAAACTTCG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044833XLOC_044833-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000022_pilongenomesc0000022_pilon:536155..544758 +
Properties
Property NameValue
Aaloc1348-1425:8527
Aaloc1273-1347:7919
Aaloc1183-1272:2615
Aaloc427-1179:1204
Aaloc214-423:726
Aaloc1-213:1