XLOC_044825 (mRNA) -

Overview


Name	XLOC_044825
Unique Name	XLOC_044825
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000022_pilon:764542..771727+
coding sequence from alignment at sc0000022_pilon:764542..771727+

mRNA from alignment at sc0000022_pilon:764542..771727+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_044825 ID=XLOC_044825|Name=XLOC_044825|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7186bp|location=Sequence derived from alignment at sc0000022_pilon:764542..771727+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCAACTATAATGAATTTTGATGTATTTAACAAATTACAAAATGC
ACCATCGTTGTACACAATGCAATCAAATGAACCTGCTATACGTATTTACG
AAATTTGTGATAGCACAGAATCCAACCCAAAACCAGAGAAAAATCATGAT
TTGATGCTTGGAGAATTTGTAACCCAACAAAATCTGGTaggtttttgatt
aaaaaaaaaatagttaaaatgCTTAGATGATAATTTGGCAGTAATATCTT
TCATATATAATGACTATTTGTAATTATGTGAGATCAACAGTCGAAATTTG
TTCTcaccaaaatttaaaatctcgttgcttgccaaaataagttctcaccA
TGTTCTTACTAAAATTAGTCCCCTTATACAGGTAAATAATAGCTTTGTGG
GCTATCTAAATATCAATTCCaggctaaaattttcatttattcaaATACTC
ATAAtagtattttgttgttgttttttcaaattttcttctaaTTCTATTTT
CATTAAGAGGGAAATAACTGGCACACCTGATCTAAgtcaagttgaagaat
tgaaatTGAAGGTTGATACAAATGAAACAAGCATTGGCAATATAGGTACG
AGCTTAGGTatataaaatatgttttttcttttggtgTAAAAAGTTCAATT
GCTCTTCAAAATGACTTATGGGATGGGGCATATCTTTAACCCTTTAAAAG
TGCTAATGTCGAGTATATATTGGCCCTTCTGtataatgcccagtttgagt
tagaaatcgtcatttttagtCTAACTtgtaggaattggattgtgcttcat
ggtcaagcaaaaaaaaaattcaaaagcaagattttaatctaaaaagtcaa
gaaaatgcaaaaatttgacaaaatccaCTTACactattttgagattttga
ccgttttttgaccatttttggtcaacgagttatccgccaagaacctccaa
atttggccctgtctTACTTTATTATGTCCTCTAGCGAATTGATTTTAAGT
TTTACCACTGAGCACCTTTCCGTCATATAGGTCAGGTATGTGCACcaaag
gcgcccaaaagaaagaagagactttAAGCTATGAACAAGCTatgaacgag
cttctaactccttctagaccCGGTGATAAAAGCCTTTAAAGTTAACCTAg
cgattttcttataaaattaaaaaaaaagactgtTGCACCTTAAAGGATTA
AGCAAGATTACAAGCCTCAATACAGACAGTATTTTATTTCGATTTGACAG
GTTTTCGGGCTTGCTTTAGTTCTGAAACTACTgtctttattcatgatatg
caccattgcaatgtgtAATGACATTACATcgcggacccaacagctgattg
gttgtaagtgacgtaaagtcagtcaatacgtcaatttcaaccaatgagct
GTTGGGTtcttggaagacattgcaatggtgcatatcatggatcAGGAATG
TAAattactttctaaaaatcgaaaatttgtcCTCATGGAATTTAACTGAA
AGCTTTATCAAGGCTCCTGTAgcctgaaatttttttcaagcctTTAAATT
GTATTCAAATGAACGCTGAACGTTATGTAGATTATAAAAATGTAATAGAA
AAACAAGCACAGATTTCCGAAGGCCCCGAATATGCTAAGAATTCGACACT
ATCCGTctttaaataattaaaaaaataaatttaatcaGGAACGTAGCAac
tctttgaaaatttatcattggAATCAGGTCTTATTTTTTCTAGGTTCAAT
GGTTCCAGGTTTGAAAAGGTTGAACCTGAGCAACAGCTATGTAACTTCTA
TAAGGTATGAAAATGTTATTATCCTTGTTTTATGTAGCAAATTTTACGAC
ACCTCAAATAGCTTTGAGAGCGAATCTTTACAATTAATTGGATTTCTGTT
AATTGCATCTGTTTTCTAAACAATCATTCTGTGAACATGTTCATAACGCG
ACAGTTACTTAACTTCAGGGCCTTTTCATACtgcaaaatttatttatttc
ctgTTTTTCATATCTCTTTCTACTTATCTCAGGGATCTTGGTACAAGTTT
TAGCAATTTGACGATGATCTGGTTATGCAGGTGTTCTTTGGTTGAACTTG
ACGGGATAAGCTCACTGAGCTCGATGAAGGTACCATTCCATTTCCAAAAA
CCATTCCAAGTCTTGATTACTACCGCTAATTCTCTTGACCCTTTATTAAA
AATAGCAGTGTCCGTTTATTCGCAAAATTTATACTTTAATTATAGGCAAT
TAGGCGAggcaaatttaatttattgctTATACGGGAAGATCTCCAGAAAA
AtatcggtcggtcggtcggtatattaaaaatagatttctaaAAATCTAGG
AATGGAAGGTCAAGATCTAAAATATTGGTGACGTTTTGACGTTAGTCTTT
ATCAATGAGCGCCTTTTGTGTCATTTCTATTGTGATATTTTAAAATCGTC
GTTGAGTTCTGGAGTGAATTTACACTTTTCAACTTATTCAGTTTAAAATA
TCTGCaaaaaaaCTTACAAAGTCCATCCATAAGCTTTGCAAATTCAATAT
TAATTAATAATTAAGTTTGACAGGAAAATTCACTTGCTCTGCTAATGATT
TTATAATCTAGGTTGTTTAGCTGTGGTTAAATATacctttgaaaaattat
tttaaccaTTCTCTTATTAGTTTCGGAGGACCTTCGGTTGGGACAATTTT
ACCCCAAAACTTATACATAAGAAGCTAGCCAATATTTGAGGCCAAAACTT
ACACAATACGGCTCCGATCCATCTTGTCTAAACCCTTCTCTATATATTAT
GCAAATTAGAAGTTAAATAACCCAATTTTGATCCATTTTTATATACAGGA
ATTGTTTTTGGCATTCAACGATATTTCTGATTTAAGCCCATTGAGCATGC
TTGATACTTTGGAAGTACTCGACTTAGAAGCGTAAGTATACAACTGTTAA
TTtgtaattcaattttttaacagAAAACTTCTGCTCATTGTAAGTAGATA
AAGAATATCCCAAAGGTCCATTATGGAAttttaaaacagaaaaagaaacc
AATCCTCATAAAATGCAGGCCCGGTGGAAGTGGGGAAACTAGGGAGACTT
CAGCTttcccacttttgagcaaatgagacttttttctcatatttctaCCA
AAATTTTATCTCGTTTGGGctttcagcctccccactttaacgATTGTTCC
GGGCCCGAAATGGGATGTCATTTTGGAATCATTTCCTATCCTTAGGTGAT
AATTAACACATTAACCCTTGTACTGTAtatttgatttcgtttttctttAC
TTATCAAGCAATAACATCGACGATATTACCCAAGTGGAGTTTCTTTCCCT
GTGCAGTGATCTGATCAACCTGACGATGAAAGGCAATCCAATTGAAGTCA
AACCAACTCCTGAATCACAGAAAGCTGTAAGTCACCAAATGATCGacctt
tgctttttttaaatgtatctagcctatactagacgtcacggccTTTTCTT
TATACAGTAACGTCTATTCCGCTTTTTCGAAAGCCCATtttttcgggctc
caaacattctattttttgacgtcactttaaacttttgaagcccttgcagt
agcaaaataatcgaatttgcgtcaaagcacttgaaaggcttctatttcac
gaaaatcatcaaagtggaactcactaagaaacgggatgaaaaatcccggt
ttttggtgaggtgctcgctactgaaaatctgcaaaaatctTACTTAAAAA
CCTAATTTGTGAAATATGTCAAAGCTtgtgaaaaaaacttaaaaaaaaaa
attcttttattctGTTTTCCAGGACTTGAAATATTATAATTACTCAGATG
CAATCATCACTTGTTTACCGATGTTAAAAATCTTGGATGACGAACCACTA
TTGGTTGAACGAGTTGATGGCCAAGAAGTGAAACGTGTCAATCCAAGGAA
AGTGAATAGGGACGAAGGTGCATTTGAGAATGACTTGAAGCTGATTGAGG
TCAGTTTAAAGTCATTAGAGACTGAAGAGCTTGTTGAGGAGAATGAAGGT
TTGTAATGTTAAAggattttgcttttaaaataagactgatatcgtttgct
tactcatcaattttgatttacaagcttttgttttgatctttcaaaTGTAC
TCAAATCACAATTGATGGACTTTTGCATAATTTCTACACTACACTACTAC
CTTGTTATCATCAATGAggaaaattggaaaactttctTGAATCGcacttt
caagaattttcaaagacatttactttcgcgaaaaagcctgaaattcacga
aaatcgcgaaattgTCTGcttgcaaaagtttgtacgccaaACATATTCTG
GTTATGTTTTTATGCACGTATACTTTCTAAGTAAAAGGAGCTTAAAATCC
ATATCTTATCAATTGGCAAAATTGATCTTAAAGTTTTGTTCGGGCTAAAT
TTGAGctcttatgttcttatgaatTTTCAATCATAAAACCGTATAATTTC
TACGTTATTTACAGATATCGATCAAAGTGTAGCACGGCCGCGGACAGCAA
CACGCCGCTCACGAACGGCGAAATCACCAGAAAAGAAAATCACACGCGCA
ATTGTTTCACCTGAAGATCGTATTTTATCGTCAGCAATCAAAAAGGATAC
TGAAAAGGAGTCTGAACCCATGAAATCTACATCTGAAGTGACGAATTTTA
GTAGTGATTTAACTTCAGGTATGTTTAACTTATCTTGATGCTTTTTTACT
CCTTTTTGCAATACCTCATAGCGAccatagtgcagtggtagagcatccga
ctacggtgtgcaaggttgtgggttcaacccccagccgggtcataccaaag
attcccagaatggtacttgatgcctctctgcttgatgctcagcaattaag
agaatgatcaagggtaaattgagcaatccagggagaaagagtggcgccct
cccctaccttcgggtagaaagctatcgaaagaggagccttcgggtcgcct
ccgactgcgatcgcaaacttacttacttaatacCTCTAGTCTAGAAACAT
ACTTCTTTATCGTAATTCTTCTGTATCCCGATTCTCACTCAATGAATTTT
GACATACTGTTTGTTCCATCCATCTTTCTATTGAAACCGAGATTACATTT
AGCGTTCCTTTACACAGGTAATGTTATGTGTGGGAATCCATTTGCGGCAC
TCCGTCGCCGAAAACGTCAAACGACTCCTGAGGATAAACCACCTCAAAAA
GAGGAGCCAGTAACCTTGGTTACGAAGAGTAAAAGTGACACCAGCGCTAA
TATATTTAAAGCAGAACATTCTTATTTGTCGGCTGAGGAAACGAATGTGG
GGAAAAAGGAAGATGTGTTTGAAGAATTGAGACAATGGAGGCTGAAGAAT
CAATCGTAAGTTTGTTAACGACGGTAGGCAAGCCAATGATTGCAAGATTA
CTGAATTACCTTGAGTTTCAAAATAATAAGTGACATTGTTTTATGGATAT
GAATACAGTttactctcgctaattcgaactcaaaggGGATCTTaattgtt
cgaattacaaagagattcgaattatagaaagtataacaggagggtttctc
cttgacggggactggagAGTAGTTCCAATAATAGAAAGATTCGGGGTGat
aaaagttcgaattagtAAGAATCTATGACGTATATTGTTTTGAAGCTTTG
TTGTTATTTGTTGTCTTTGCATccgtacagttgactctctctaattcgat
cttcatgggaccaaaagttttctttcgAATTagggaaagattcgaataac
agagagtaATCTAAACCACTTTAtatattagttcgaattacataaagatt
cgaataatagagattcgaattagaatGAGTTGATTGTATTTTAAAAGTCA
AAGTTccaatcaaaacttttttcctaCAGATTGTTTGATAGTATGGCAAC
GACTAAGATCAAATCTAACACATCAAGATCCACACGTGAGCAAACCACAT
CACCATCGAAAGCTGTGGACACTACAGCTTCTGGAGGGGATGGAGATGTT
TCACCAAGACGAAAACAACCAACACCGTTGAAGCCTCTATCTCCTCTACG
ATCGTCTATTGATAGCTCAATGTTTAAGTATGTTTCTCTTTTGAGTTTAT
TTTGGATATACTTAAGTCAATTCTACAAGTaccattttttttcaacaatg
gTTAATTTGAGTATCTATCTAATCTTCATCGTAGTTTTACGTTTACTTTT
TCCCATCAATtgaactttccatttgcctatgacctagattaggggtagaa
accaatcaagtagtcagacggctGAGAAGTAAGTGCGAGTcggtagatat
aagtttggcatgaaattatggCTACCTCGAATAGTATATTTTGGggaaaa
attgtcaaatttatcaaatttcctgaaaagtaaaaaaagtagcTGTCTTT
AAATGCATGCTTCCCATATTCTCTTTTAGGCGCCGTACATCACCGCAGAA
ACCAGCTTTTTCCCCGGCACCACCCTCCCTTCCTCGGAAAAATACCACCC
CAGGGCGTACAAGGCGTTCCCTACAGACTAGTCCTCCGAAAGCTGTTTTA
CCAAATATTGGTGATCGGCCTCACACTGTAGGCGGAACAAGGACAGAAAT
ATTCCTTACAGATGTTTCGTATCCAAATCAGTTGTCAGCGAGAGACGGCA
GTGACATACAGCAAACTCACGTGACATTAAATCAAAGGTAATTTGATTCA
TTTCTTCCCCTTTCTTTTCCCAGTTTACCTAAAGCATTTTAAAGGATCAA
TTAGAATAAGTTTTACGTGATAAGAATTATACCtttttttCATCCATAAA
TATTTAGCGGGTAGGACAAAGGAAGCCGACCCTATCTAAATTGAACTAGG
AtttaaatttctatctttctttaTAGCTTGAAATTTGTCCTTTCTAGTCT
TCTAAAGTTATTGGACATTGTTTCCATCAGGGTAAGAACGATTTTGTAAC
TATTTATAAAAATGGTTTCTGTTTGTATTTATTTCCAGGACAGACATCAA
CGCCAACATACGTAGCAAGAGTCATCCTGTGCAGAACCAAAGGAAAACTC
CTTCGCCGCCTCTATCGCCTTTAAACAGACCAATGACCGCCCGGGCGGCT
TTACAATCGCTTCAAAGACCCTTCTCTAGGACTAAT

Coding sequence (CDS) from alignment at sc0000022_pilon:764542..771727+

>XLOC_044825 ID=XLOC_044825|Name=XLOC_044825|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3834bp|location=Sequence derived from alignment at sc0000022_pilon:764542..771727+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCTGCAACTATAATGAATTTTGATGTATTTAACAAATTACAAAATGC
ACCATCGTTGTACACAATGCAATCAAATGAACCTGCTATACGTATTTACG
AAATTTGTGATAGCACAGAATCCAACCCAAAACCAGAGAAAAATCATGAT
TTGATGCTTGGAGAATTTGTAACCCAACAAAATCTGATGGCTGCAACTAT
AATGAATTTTGATGTATTTAACAAATTACAAAATGCACCATCGTTGTACA
CAATGCAATCAAATGAACCTGCTATACGTATTTACGAAATTTGTGATAGC
ACAGAATCCAACCCAAAACCAGAGAAAAATCATGATTTGATGCTTGGAGA
ATTTGTAACCCAACAAAATCTGAGGGAAATAACTGGCACACCTGATCTAA
gtcaagttgaagaattgaaatTGAAGGTTGATACAAATGAAACAAGCATT
GGCAATATAGGTACGAGCTTAGAGGGAAATAACTGGCACACCTGATCTAA
gtcaagttgaagaattgaaatTGAAGGTTGATACAAATGAAACAAGCATT
GGCAATATAGGTACGAGCTTAGGTTCAATGGTTCCAGGTTTGAAAAGGTT
GAACCTGAGCAACAGCTATGTAACTTCTATAAGGTTCAATGGTTCCAGGT
TTGAAAAGGTTGAACCTGAGCAACAGCTATGTAACTTCTATAAGGGATCT
TGGTACAAGTTTTAGCAATTTGACGATGATCTGGTTATGCAGGTGTTCTT
TGGTTGAACTTGACGGGATAAGCTCACTGAGCTCGATGAAGGGATCTTGG
TACAAGTTTTAGCAATTTGACGATGATCTGGTTATGCAGGTGTTCTTTGG
TTGAACTTGACGGGATAAGCTCACTGAGCTCGATGAAGGAATTGTTTTTG
GCATTCAACGATATTTCTGATTTAAGCCCATTGAGCATGCTTGATACTTT
GGAAGTACTCGACTTAGAAGCGAATTGTTTTTGGCATTCAACGATATTTC
TGATTTAAGCCCATTGAGCATGCTTGATACTTTGGAAGTACTCGACTTAG
AAGCCAATAACATCGACGATATTACCCAAGTGGAGTTTCTTTCCCTGTGC
AGTGATCTGATCAACCTGACGATGAAAGGCAATCCAATTGAAGTCAAACC
AACTCCTGAATCACAGAAAGCTCAATAACATCGACGATATTACCCAAGTG
GAGTTTCTTTCCCTGTGCAGTGATCTGATCAACCTGACGATGAAAGGCAA
TCCAATTGAAGTCAAACCAACTCCTGAATCACAGAAAGCTGACTTGAAAT
ATTATAATTACTCAGATGCAATCATCACTTGTTTACCGATGTTAAAAATC
TTGGATGACGAACCACTATTGGTTGAACGAGTTGATGGCCAAGAAGTGAA
ACGTGTCAATCCAAGGAAAGTGAATAGGGACGAAGGTGCATTTGAGAATG
ACTTGAAGCTGATTGAGGTCAGTTTAAAGTCATTAGAGACTGAAGAGCTT
GTTGAGGAGAATGAAGGACTTGAAATATTATAATTACTCAGATGCAATCA
TCACTTGTTTACCGATGTTAAAAATCTTGGATGACGAACCACTATTGGTT
GAACGAGTTGATGGCCAAGAAGTGAAACGTGTCAATCCAAGGAAAGTGAA
TAGGGACGAAGGTGCATTTGAGAATGACTTGAAGCTGATTGAGGTCAGTT
TAAAGTCATTAGAGACTGAAGAGCTTGTTGAGGAGAATGAAGATATCGAT
CAAAGTGTAGCACGGCCGCGGACAGCAACACGCCGCTCACGAACGGCGAA
ATCACCAGAAAAGAAAATCACACGCGCAATTGTTTCACCTGAAGATCGTA
TTTTATCGTCAGCAATCAAAAAGGATACTGAAAAGGAGTCTGAACCCATG
AAATCTACATCTGAAGTGACGAATTTTAGTAGTGATTTAACTTCAGATAT
CGATCAAAGTGTAGCACGGCCGCGGACAGCAACACGCCGCTCACGAACGG
CGAAATCACCAGAAAAGAAAATCACACGCGCAATTGTTTCACCTGAAGAT
CGTATTTTATCGTCAGCAATCAAAAAGGATACTGAAAAGGAGTCTGAACC
CATGAAATCTACATCTGAAGTGACGAATTTTAGTAGTGATTTAACTTCAG
GTAATGTTATGTGTGGGAATCCATTTGCGGCACTCCGTCGCCGAAAACGT
CAAACGACTCCTGAGGATAAACCACCTCAAAAAGAGGAGCCAGTAACCTT
GGTTACGAAGAGTAAAAGTGACACCAGCGCTAATATATTTAAAGCAGAAC
ATTCTTATTTGTCGGCTGAGGAAACGAATGTGGGGAAAAAGGAAGATGTG
TTTGAAGAATTGAGACAATGGAGGCTGAAGAATCAATCGTAATGTTATGT
GTGGGAATCCATTTGCGGCACTCCGTCGCCGAAAACGTCAAACGACTCCT
GAGGATAAACCACCTCAAAAAGAGGAGCCAGTAACCTTGGTTACGAAGAG
TAAAAGTGACACCAGCGCTAATATATTTAAAGCAGAACATTCTTATTTGT
CGGCTGAGGAAACGAATGTGGGGAAAAAGGAAGATGTGTTTGAAGAATTG
AGACAATGGAGGCTGAAGAATCAATCATTGTTTGATAGTATGGCAACGAC
TAAGATCAAATCTAACACATCAAGATCCACACGTGAGCAAACCACATCAC
CATCGAAAGCTGTGGACACTACAGCTTCTGGAGGGGATGGAGATGTTTCA
CCAAGACGAAAACAACCAACACCGTTGAAGCCTCTATCTCCTCTACGATC
GTCTATTGATAGCTCAATGTTTAAATTGTTTGATAGTATGGCAACGACTA
AGATCAAATCTAACACATCAAGATCCACACGTGAGCAAACCACATCACCA
TCGAAAGCTGTGGACACTACAGCTTCTGGAGGGGATGGAGATGTTTCACC
AAGACGAAAACAACCAACACCGTTGAAGCCTCTATCTCCTCTACGATCGT
CTATTGATAGCTCAATGTTTAAGCGCCGTACATCACCGCAGAAACCAGCT
TTTTCCCCGGCACCACCCTCCCTTCCTCGGAAAAATACCACCCCAGGGCG
TACAAGGCGTTCCCTACAGACTAGTCCTCCGAAAGCTGTTTTACCAAATA
TTGGTGATCGGCCTCACACTGTAGGCGGAACAAGGACAGAAATATTCCTT
ACAGATGTTTCGTATCCAAATCAGTTGTCAGCGAGAGACGGCAGTGACAT
ACAGCAAACTCACGTGACATTAAATCAAAGGCGCCGTACATCACCGCAGA
AACCAGCTTTTTCCCCGGCACCACCCTCCCTTCCTCGGAAAAATACCACC
CCAGGGCGTACAAGGCGTTCCCTACAGACTAGTCCTCCGAAAGCTGTTTT
ACCAAATATTGGTGATCGGCCTCACACTGTAGGCGGAACAAGGACAGAAA
TATTCCTTACAGATGTTTCGTATCCAAATCAGTTGTCAGCGAGAGACGGC
AGTGACATACAGCAAACTCACGTGACATTAAATCAAAGGACAGACATCAA
CGCCAACATACGTAGCAAGAGTCATCCTGTGCAGAACCAAAGGAAAACTC
CTTCGCCGCCTCTATCGCCTTTAAACAGACCAATGACCGCCCGGGCGGCT
TTACAATCGCTTCAAAGACCCTTCTCTAGGACTAATGACAGACATCAACG
CCAACATACGTAGCAAGAGTCATCCTGTGCAGAACCAAAGGAAAACTCCT
TCGCCGCCTCTATCGCCTTTAAACAGACCAATGACCGCCCGGGCGGCTTT
ACAATCGCTTCAAAGACCCTTCTCTAGGACTAAT

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_044825	XLOC_044825-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000022_pilon	genome	sc0000022_pilon:764542..771727 +

Properties


Property Name	Value
Aaloc	1771-1917:7040
Aaloc	1513-1767:6481
Aaloc	1315-1509:5931
Aaloc	1078-1311:5170
Aaloc	874-1074:4517
Aaloc	646-870:3823
Aaloc	529-645:3310
Aaloc	445-525:2849
Aaloc	349-444:2034
Aaloc	289-345:1746
Aaloc	187-285:508
Aaloc	1-186:1

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XLOC_044825 (mRNA) -