XLOC_044616 (mRNA) -

Overview
NameXLOC_044616
Unique NameXLOC_044616
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000104_pilon:411203..418138+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044616 ID=XLOC_044616|Name=XLOC_044616|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6936bp|location=Sequence derived from alignment at sc0000104_pilon:411203..418138+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCtgacagaaaatttcaaacgaCAGACAACGATTCAACACAAGGAAAA CCAGTCGATCTCAAAACGTAGAGACAATCTGACAGAtttgaaaaaacatt caaataacAAACAAGATGGTCATCAAACCAATTCTACTAAACGGCAAACA ATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACACGATGA AGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACTATTTAg ccgaagatgaaaatgaagtgGCCGCAACCGATAATTGCCATGACGACGCA CTCCAGGTGAGTAAATTAGAATTCACCCGTGGaaaaaaaGGTTGATAATC ACAATGTACGAACGCCCCTAAAGACCCTTACTATCGGTCATTTATTGTAA CTCTCGGGATCAAACCCTGCCACTAACTGATGATAACTTAACCCCTGTCT TCCAGGGTAAATCTTAGCGACCCATGAATAATGAATAAGTATTTGGTGAT CCTATAGGTATATGAGTTACTACTTAGTTTACACAATAGGTTTACACAAT CAGGCTTTTAGACCTTACTTTTggagagtaggagttttacgctcgaaacg aagatatgacgtagcctatatAAGAGTATCCTTTTCAACCTCACAGAAAC GTGTAGCTGAAATCATCAACGGTGGACcggaaaaattaaaacaagccTGG ATGAAACGTCTGCATTTCGTCAACGAGTCTGTATTAGACGTTGGTAATTT CATCCCGTTAGTGTTATCTAGATGGTATTGTTCTGGTCATGGTTGTGGCC TGGACCAAGTTGCAGTCGAAGGGAAAGAGGGTAGGTACTAAATCTTAAgt ttttaccctttttgttacgcacgttttttgttgttttttttagtataaga gcaattttataagaaacatgagactccaaacaaaagttaaaatgtgTTAG CCTATTTCATTACAAAAACCAGTTTTGATGGCAAGCAAGAAAGTTACCTT GTTCGCATTTTATGAAATGAAGACTCTCGTCCCGAAGACTAAAATacaca agaagaaaaaacatttgataGTCGCATTCTTTTTGTAATCcgagttaatt tttttaatagaagGTTCAGTGAAGCTAGTAAGCAAGCGATTGGACGGACG ATACGATTGGTTGACTTCGCCGTATAGTATCAAACAAAAACGTGCGAAAA TTGTGGACATAGGTGACGGATGTGACAACTCTACCAGTACTAAGTACACC AATACTGTTGTCTTGATCTCCAATAATAACACTTGCACATATTTCCAAAA GGTAATCGACTAAGATATAAGTCAACtccctctaattcgaacctctctaa ttcgaacctctataaatcgaatctttctatagttcaaattaaaatattgg tccccttaACTGGTCAGTcgttataaaatattttacgtAATTCGAAATTC TCTGTAAtttgaagaacatttttggtTCCATCAAGACCGGATTAGACAGA GTCAACGTActgctagtctgaatcgcagacctctatagatatacttccta tatgtATATgagaaactcttttcgctagaggatgagcagaagcctaacgT ACTGTGGTAACATTTTCTGGTGTGGTCAAGTAGTTAGCggtctttttaaa gaatttcgcACCcctcattatatattttttacacTGGCTCTGATTACTGt gggcgcgttcacactggaaagtttacctaattaaatctatcaaagttaaa caaagagatttatgatggatgaatacactggtttattacagttctttgta ggttcacgagatctattataacatgttaattgattttgcttaaggcttct cattggttgattttttattgagagtttcgatttcacctgtgattggttga tattggtatccatacatcacttgaaatccgcaaGCATATTTGTTCTAATG ATTTTACTCATTAATTGCATTAatcttacacatcaacaacaccgtttgca ctatttctaatttttttcttagttcattcgtttttgaaatcgtaaaactt ttttttcactgcacgcattctttgtttatgcttccttaataaaatctttt gttttaagggtagcctctaccctacccttaggacaatagagcttacgacg cttaattaaggaagatcgattaaaaattacaatactacgcgttcgactct ttgttaaatgcacgttctgtattgtagtcaacaaaagattctcctaacta catttttattaaggaaggtctgtagtgtgaacacgacctGTATCTTACTA AAAGGGTATAACATGTTAGTGGAGAAAGAAATGAAACGATAAATGTAATT AATTTACTTTTTGGAACCCAACAGAATCATCAATTAAGTGGATGTGTTAA ATTATGGTCACactttttaaaacttaaagACCATTTAAAGTTTACAGCAT TAGAACCTTAACAATTTATTTTAGCTGAAGAATGCACAGGAGAAGGGGGC ATTGTGTGCAGTCATTTATGCCAATAATGGAGAAACGTTATTCGATATGA CTTGTCAGAATGCTGAGTGTGAGGTATAACATGCTTTATATACATCTGTT TACtacgcgttttttataagaataaactatctaagaacacaaggcttcga tgtcCAAAATgctgttaagaacattttaagctttgcagactctaaaacac ccgatttcttagtaaaatagacaaatatactcaaaaaatggcgaaaataa gaacatgttaaaagaacatttttaagaacatccaaaggcttcaaaaattt tggatgttcttataagaaaacgtgtattacaATTGGACCACTATCCATCT AACCATGGGTAAACGACAGGATGATACAAATTCAGCCTCGACCTCGTCCC CGCGTATCCATGGCTTTATTTACGCTACGGATGGTCGTCAGAGAATAACT TACGTTGGCTTATGCGAGTTCAGTGCACAGAGAGGGGGAGGGGATacttt taagtcattaaaaaccTGACGATCTAGCTTCTGGTATGAGAGGCTTCTGA GCACCATTTAGAAAGATCGAACTTTTTTCCATATCGGGCTTACGCGCGTT TTCATACGTCAACGACATCCAAAAGTAATTTAAGTGAATCAGACTTAATT GATTAATTCTCGAATGTGGAATATTCAAATTGGCGGGGGTTCACTAAAGT TTCCAGAGAACCAATCATTTACTTTCTGAAATCAGGTGGAGATGAAGATC CCAGGAACCATGATTCCTTATGAAGATGGAATCAAAATCAAAGACTTGAT CAAAAATAACAAAGAGATCAATGTTCACTTTCAACACACACCCTGGTGGA ATTTCTTTTTCGGCATCGATGAACAAGGAAAACTACAAGAAGTTGGTTGG CTAGTCTATCCATCCATGATTTTCCTCAGTTACCAGGCTAAATGGTATGT ATATGATTTCTTTCGATTAGTAAATTAAATGCCAGAACActcaaaatcaa atcataatACGACTTTACACAACAATTTCGCCAAGATTCAGAAATGCTGT TCTAAAATCTGACTGATATGGAGACGGAAGGAAGAAAGGCTTAAAATCTC GCCGGAAAgcctcacttttgaattttttttgcttgaccatgaagcttTAT CCAACttctacgagttagaccaaaaatgacgatttctaactcaaacttgG CATTACAGGAGGatttcgccctcctatatagccttGACATGGACAGGGAA AGGGTTAAATATACGCACCGGACTGTGTCAAGGCATTTCAAACGGATATA TAAACAGTGTTGAATGCATTGTGCTTTGCTCCTTTatattttctacaaaa aaaaacagaattctCCCTCGAAATTTTGATATCACTTTGTTGCTTTTCCA GTTACTTTATTTTGAGTCTCTTCAACTCATAAAAACTAAGGAATGGTCAC ATGGCAGAACCCTTTTGTTGTATATACCCCTAATAAAATAAAGTATAAAC TTACAGATCAATGTTGTTCTCTTTCCCATCCATGGTTTGATCTTTGTTTA CTTCCCATCCTGATttgatcttttatttttcactcAGGTTGAATTACGTG ACCAATCTTCTTCATGACATCAGTTCAATGAAGCAAAAATCTGATAATGA AGAGTTAACAATATTTCAAGGGAAGATTATGCAAGGAAACCACGGTGTTG TGGCATGTCATGAAATCAAAGACAGTGTATTCaaaggtacatgttttttt tagacATTTAAAGACTTTGAAGCTTTTGGATGTCTAACATACTAATTAGA AGAAAATTCTTGCTGCCTTGAAAATCAATTTAAGACAGTCAACtgtcaaa ttttatttgcttttacaGATTTATCAAAATTCGGGCACGTATATTTGGAC ATGGCTTTAGGATGTCCTGGTTCAACGGATTTCACTTGTCCGCATTGGGA CCATACCGTACAATTATATTTGAATTGCGGCGAGAGTCGTGTACAATGTa aagaaaataagaagaaaaaaaggaatcaCCATCAAGTTCGTTTGGGTCCT GAAATTGGACGTTGGATAACACCATTTAGAAGgtaaataattatttcaat ttcCACGTAAAGTAAAATTACGCTTGAAAAGGGGCTTTCTAAATGGGAAG CATTGGGTTTAAAGCCCAAAGAAGAGTAGAATCTCTGacctttcccaggc aaaaaaagtgaaaccagatatttttcatccagaacgcgcctagaacgcgc tgtaatcatgacgacgggttgtatctagtggttcctttgtttttgtggac ttttgtggcgtttttgaaatctagcgatagattttacctTCAGTCCGGTA TTTGTGTAAAAGCTACGAGCAGGAGTTCTGGATGGGaataagtagcttca tttcccatccaggagtctcgagtctagtcCTTCGCCCTTGGAAGTCAATG ATGGAAGGTAAGTTGACCAAGCTAGttgttgaaaataaatgaaatatcaa GCACCCTGCGCGTTATCTTTTTTGAGCTATTTGATTGGTTGTTAGGATAC CAATGAAGTAATTCGAGTTGTGAAACTTGAATTTCTAgtgaccaaaaata aaaaaacacatgtGTTATAATCGCTTTGTAATATTGACAGAACCATTGCC ATTCATATTTATCTGAAACCTGCTTAGGCAGGTAGTCTTTTAAGTTGACA TGGACAAGTATGTCAATatattaagggctctggtcatagtgaaaaatcaa tgtcagaatttgaagataaaaccttctATTTTCGCTTCTTTggcatgttt aagaacaaactgcttttgaaagaatgaatttaagtaattacatcatgagt aattaagaaataagtgtggcatggactttaatacagggtgtccctaatta aagtatcgagtttgaacatgcgattgagtagaaaagtttgtgtgtgttat cgctaaaatataagaacgttctccatcacacaggcttattacaaaaggta gttacaacgtataaattaatcgtaatgacaaaaaaaaagagggagagctt aaaatacaattttttcaagttaatgacaaataatgtttctttatttagat tttttcggaaaaattttctatttggctacatcccaagttatagctgtttt cgtatgaaaatttaatggagaaaattgccaaacaTGAGGtcttttggaga ttttaaaggaaatttaattccacaaaaattttccgaaattgtatttttag atactaaatagatacatcacctaaaccaaaaaaaattccaaaatgtttga tttttaccgggataagggctttgaaaggtgaaatactcttcttcgaaaag ctcttcgttttcttcttcatttatttttttcatctcaatttttcgatttt taatttaaaatgcagaaattgccattcATTCATCAGTTTTGTTTATCAAT TTCAGACGTATTGGACGTTGGCTGACCGACATTCGACCACTTGCACCTTT ATTCACATCGAAATCGTGCACTTTTACCATGAAGACAGTGCCTTGGGCAA TGCCATGGAAACCATCCTTAAAACTATGGCTGACTGATAAAAAATCTGGT AACATGCTTATCTCATCTTATATATAACTCAGCGAAAGCTTTTTTACGGA GTAAGgctcaaatgtcaaaaaataaccTCAATCTAATTTTGTATTATTGA TGTTATCGTTCGTTACAGGAAATGCAAACGTGGGAAAATATATACGCGCA TAATTTACAGTAAGAGATGATATAAAGTTGGTATAAAGTCTCAAAACCAT AATACTGAAATCTTAAGTCCTaggatttaaattttaaatcaatgaTTAGT ATTAATTATTCAGAgtatgtttttgtattttttaggaaATATTGACCAAC CGACTATGTTTGAAGAGCTGTTCAGAGGTGGGACGTTCAACGGCTCGTAT AACTTAGATTCGCCGAAAGGGCGCCGTGAGAAAACCATTAACGTCCCTAA GAACGTGACCAAAGCTATGCTGTTTGCAACCATCACGGGCCACGGAAGTG ATGATAATAATTGTGCCGAATTTTGTGTGACATCACACCATTTCCAAATT AACGAAAACGATAATGAACGAGTGTTTGATAATGCCGGTACAGCAACGGG ATGCGCGGACCGTGTTTCCGAAGGCTCGGAACCGAATGAACACGGAACGT GGCTTTACGGCCGGAATGGATGGTGTGACGGAGAGAACGTCGGACCGTGG ATCGAAGACGTTACAAAACAAATACGCCCTGGCGAAGAGAACACTATCAA ATATAATGGATTTTTTAATAGTAAAGACCCAGCACCGAAAAGGGATCCAG GAAATATTATTATGTACTCTTACTTGATTTTTTATACTAAAAGTGGTGGT GGCCAGGCTAGTGATGACACAAAGAATAATCGTTGA

Coding sequence (CDS) from alignment at sc0000104_pilon:411203..418138+

>XLOC_044616 ID=XLOC_044616|Name=XLOC_044616|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4092bp|location=Sequence derived from alignment at sc0000104_pilon:411203..418138+ (Clytia hemisphaerica_ch_hm2_pilon)
AACCtgacagaaaatttcaaacgaCAGACAACGATTCAACACAAGGAAAA
CCAGTCGATCTCAAAACGTAGAGACAATCTGACAGAtttgaaaaaacatt
caaataacAAACAAGATGGTCATCAAACCAATTCTACTAAACGGCAAACA
ATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACACGATGA
AGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACTATTTAg
ccgaagatgaaaatgaagtgGCCGCAACCGATAATTGCCATGACGACGCA
CTCCAGAACCtgacagaaaatttcaaacgaCAGACAACGATTCAACACAA
GGAAAACCAGTCGATCTCAAAACGTAGAGACAATCTGACAGAtttgaaaa
aacattcaaataacAAACAAGATGGTCATCAAACCAATTCTACTAAACGG
CAAACAATCACACACCAGGAGAATCTCATCAAACGATCATTCATTATACA
CGATGAAGACGAGGTGTTGAAAAGGTCATTGGTATCAACCATGTATGACT
ATTTAgccgaagatgaaaatgaagtgGCCGCAACCGATAATTGCCATGAC
GACGCACTCCAGAAACGTGTAGCTGAAATCATCAACGGTGGACcggaaaa
attaaaacaagccTGGATGAAACGTCTGCATTTCGTCAACGAGTCTGTAT
TAGACGTTGGTAATTTCATCCCGTTAGTGTTATCTAGATGGTATTGTTCT
GGTCATGGTTGTGGCCTGGACCAAGTTGCAGTCGAAGGGAAAGAGGAAAC
GTGTAGCTGAAATCATCAACGGTGGACcggaaaaattaaaacaagccTGG
ATGAAACGTCTGCATTTCGTCAACGAGTCTGTATTAGACGTTGGTAATTT
CATCCCGTTAGTGTTATCTAGATGGTATTGTTCTGGTCATGGTTGTGGCC
TGGACCAAGTTGCAGTCGAAGGGAAAGAGGaagGTTCAGTGAAGCTAGTA
AGCAAGCGATTGGACGGACGATACGATTGGTTGACTTCGCCGTATAGTAT
CAAACAAAAACGTGCGAAAATTGTGGACATAGGTGACGGATGTGACAACT
CTACCAGTACTAAGTACACCAATACTGTTGTCTTGATCTCCAATAATAAC
ACTTGCACATATTTCCAAAAGaagGTTCAGTGAAGCTAGTAAGCAAGCGA
TTGGACGGACGATACGATTGGTTGACTTCGCCGTATAGTATCAAACAAAA
ACGTGCGAAAATTGTGGACATAGGTGACGGATGTGACAACTCTACCAGTA
CTAAGTACACCAATACTGTTGTCTTGATCTCCAATAATAACACTTGCACA
TATTTCCAAAAGCTGAAGAATGCACAGGAGAAGGGGGCATTGTGTGCAGT
CATTTATGCCAATAATGGAGAAACGTTATTCGATATGACTTGTCAGAATG
CTGAGTGTGAGCTGAAGAATGCACAGGAGAAGGGGGCATTGTGTGCAGTC
ATTTATGCCAATAATGGAGAAACGTTATTCGATATGACTTGTCAGAATGC
TGAGTGTGAGGTGGAGATGAAGATCCCAGGAACCATGATTCCTTATGAAG
ATGGAATCAAAATCAAAGACTTGATCAAAAATAACAAAGAGATCAATGTT
CACTTTCAACACACACCCTGGTGGAATTTCTTTTTCGGCATCGATGAACA
AGGAAAACTACAAGAAGTTGGTTGGCTAGTCTATCCATCCATGATTTTCC
TCAGTTACCAGGCTAAATGGTGGAGATGAAGATCCCAGGAACCATGATTC
CTTATGAAGATGGAATCAAAATCAAAGACTTGATCAAAAATAACAAAGAG
ATCAATGTTCACTTTCAACACACACCCTGGTGGAATTTCTTTTTCGGCAT
CGATGAACAAGGAAAACTACAAGAAGTTGGTTGGCTAGTCTATCCATCCA
TGATTTTCCTCAGTTACCAGGCTAAATGGTTGAATTACGTGACCAATCTT
CTTCATGACATCAGTTCAATGAAGCAAAAATCTGATAATGAAGAGTTAAC
AATATTTCAAGGGAAGATTATGCAAGGAAACCACGGTGTTGTGGCATGTC
ATGAAATCAAAGACAGTGTATTCaaagGTTGAATTACGTGACCAATCTTC
TTCATGACATCAGTTCAATGAAGCAAAAATCTGATAATGAAGAGTTAACA
ATATTTCAAGGGAAGATTATGCAAGGAAACCACGGTGTTGTGGCATGTCA
TGAAATCAAAGACAGTGTATTCaaagATTTATCAAAATTCGGGCACGTAT
ATTTGGACATGGCTTTAGGATGTCCTGGTTCAACGGATTTCACTTGTCCG
CATTGGGACCATACCGTACAATTATATTTGAATTGCGGCGAGAGTCGTGT
ACAATGTaaagaaaataagaagaaaaaaaggaatcaCCATCAAGTTCGTT
TGGGTCCTGAAATTGGACGTTGGATAACACCATTTAGAAGATTTATCAAA
ATTCGGGCACGTATATTTGGACATGGCTTTAGGATGTCCTGGTTCAACGG
ATTTCACTTGTCCGCATTGGGACCATACCGTACAATTATATTTGAATTGC
GGCGAGAGTCGTGTACAATGTaaagaaaataagaagaaaaaaaggaatca
CCATCAAGTTCGTTTGGGTCCTGAAATTGGACGTTGGATAACACCATTTA
GAAGACGTATTGGACGTTGGCTGACCGACATTCGACCACTTGCACCTTTA
TTCACATCGAAATCGTGCACTTTTACCATGAAGACAGTGCCTTGGGCAAT
GCCATGGAAACCATCCTTAAAACTATGGCTGACTGATAAAAAATCTGACG
TATTGGACGTTGGCTGACCGACATTCGACCACTTGCACCTTTATTCACAT
CGAAATCGTGCACTTTTACCATGAAGACAGTGCCTTGGGCAATGCCATGG
AAACCATCCTTAAAACTATGGCTGACTGATAAAAAATCTGgaaATATTGA
CCAACCGACTATGTTTGAAGAGCTGTTCAGAGGTGGGACGTTCAACGGCT
CGTATAACTTAGATTCGCCGAAAGGGCGCCGTGAGAAAACCATTAACGTC
CCTAAGAACGTGACCAAAGCTATGCTGTTTGCAACCATCACGGGCCACGG
AAGTGATGATAATAATTGTGCCGAATTTTGTGTGACATCACACCATTTCC
AAATTAACGAAAACGATAATGAACGAGTGTTTGATAATGCCGGTACAGCA
ACGGGATGCGCGGACCGTGTTTCCGAAGGCTCGGAACCGAATGAACACGG
AACGTGGCTTTACGGCCGGAATGGATGGTGTGACGGAGAGAACGTCGGAC
CGTGGATCGAAGACGTTACAAAACAAATACGCCCTGGCGAAGAGAACACT
ATCAAATATAATGGATTTTTTAATAGTAAAGACCCAGCACCGAAAAGGGA
TCCAGGAAATATTATTATGTACTCTTACTTGATTTTTTATACTAAAAGTG
GTGGTGGCCAGGCTAGTGATGACACAAAGAATAATCGTTGAgaaATATTG
ACCAACCGACTATGTTTGAAGAGCTGTTCAGAGGTGGGACGTTCAACGGC
TCGTATAACTTAGATTCGCCGAAAGGGCGCCGTGAGAAAACCATTAACGT
CCCTAAGAACGTGACCAAAGCTATGCTGTTTGCAACCATCACGGGCCACG
GAAGTGATGATAATAATTGTGCCGAATTTTGTGTGACATCACACCATTTC
CAAATTAACGAAAACGATAATGAACGAGTGTTTGATAATGCCGGTACAGC
AACGGGATGCGCGGACCGTGTTTCCGAAGGCTCGGAACCGAATGAACACG
GAACGTGGCTTTACGGCCGGAATGGATGGTGTGACGGAGAGAACGTCGGA
CCGTGGATCGAAGACGTTACAAAACAAATACGCCCTGGCGAAGAGAACAC
TATCAAATATAATGGATTTTTTAATAGTAAAGACCCAGCACCGAAAAGGG
ATCCAGGAAATATTATTATGTACTCTTACTTGATTTTTTATACTAAAAGT
GGTGGTGGCCAGGCTAGTGATGACACAAAGAATAATCGTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044616XLOC_044616-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000104_pilongenomesc0000104_pilon:411203..418138 +
Properties
Property NameValue
Aaloc1498-2046:6388
Aaloc1354-1494:5957
Aaloc1141-1350:4371
Aaloc991-1137:4089
Aaloc781-987:3236
Aaloc682-780:2475
Aaloc493-681:1113
Aaloc307-489:647
Aaloc1-306:1