XLOC_044364 (mRNA) -

Overview
NameXLOC_044364
Unique NameXLOC_044364
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000239_pilon:163967..166940-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044364 ID=XLOC_044364|Name=XLOC_044364|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2974bp|location=Sequence derived from alignment at sc0000239_pilon:163967..166940- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATTCTTGACAGCAAATCCTACTGAAAACAACCATCATAAAAGCAG AGACGAAGAAATGAGAACGTTATTCCATTCACTGAATCACGATATTCTAC GACAGCAAATCTACGATCCACCGACACCGCCTCTTACGCCTGAATCACCT CTTCATACATCAACCAATCATTTGCCATCTTTAAGAAGTCCTACATCCAG TGAACCAACATCAACTTTCATGCCGCGTTACACGAGATCACAATCATACA CGGTGGACGCCCATCCTCGCTACACGCATACATCACAGCACACTTCGTGT AAATGCTGCCCTCGTCCCTACACTAACGCCCACCAACCACGTGACTATTA CCGACGCCCTTCAACTCATCTTTATCCTTCATCATACAAGCACCATTACA CGCCTTCAACAACAGATATCGCGCCATCGCATCCCGCCTTCTCACCCACA ACAACCGCCACGAATTTAAAACGAAGATTCGAGGACGAAGATTGTTTCCC TCCTGCCAAGAAAATGAAACTGATAAACGAAGACGGCGACAATGGCAAAG ATAACCCGCAAAAACATAACAGAAATGAAAAAGGACAACTTTTGAATACT CGTAAAATCGCATGTCAAGTTCAAGGATTACTCAGTCTTCCTGGAGCTCG TGAACCAAAGTAAGAATTGTTCTTTTTTTTTTCATTAAATGTTAACTATG AAAAGTATAGCGCGCATAGGCTCGATACAAAACAAGGACGCAACCGAAAA ACTTTTATAGTCTAGAATTCAGTAAGTATCTGTGTCACTGAATATACATC GCCGAATTTTTTATCAGACCTGGCTAGTCTGGAAAAGTTAGTCTAGTCTA TATTTTTTACCAGTTTTTCTCAAGAATTCGTCAAGTGCGACATCCTTTGT CCAGTTTTGTCTCGCCATTTTCGTTGCGGCTAGACTAACCACAAAATCTC ATTTCGATACTGAAAAGTCATGTTCCTCTTTTAATACCACGACCGCAACA ACAATCAAGACATGATCTTTGGGACAGAAACATAACAAAAATGCCTCTTA CAATATCTTGTCTAGAATTTTTGTGTAAGTAGCTTGTTTTCTGAGGGTTT CTTAAGGCTGTCTATTGAACTTTGTCAATCATTTAAGTCACGCATCGATT TGACCGCTAGTGACTGGCTGGATTTATTTCAAGTGTTTTTCTTACTTTAT ATAAAAGTGTCCGCCACAGTCTTACAAAACTTGTTGAAAGTTCACACACA TGATGCTATGAGAATCTTAATGTCTAGACTAGAGTGTAGCAGTTATACAT TGACGTCAAGGCTAATTTAATTTTAAAAAAGCAAGATTTTTTTGCGCTCT CTAAATTTTCCTGACTAACGAGTGTAAATGGCTTTGAAATTCTCCGCACG CTATTTTCTCCATGTTTATACTTCGATATTTTCAACAAATAAAACGTTGA TCAATTTCTTGGATAATTTCTTATGAATGGAATCTTTTAAATACTTAACT GTGTCATCCTATTAAAGGGTATCATTTAAGGTCGTCATCCCATTTGCTAA CACAGCATTTTTGAATAAAGAAATCCCGCGCCGCGCCGCGCGTGCACAAA TTTTGAGAACTACTCTCCGCTTTGAAAGCATAGCATAAAAATATCTTTAA CTGCTTTTCTAAAGGTGTATCAAAATGGACTGGGTCGGAAGTTATCAGTT TCAATTTCATCGAATGTCTAGAGGTTGCTGCATTTGCCCCTGACAAACTC GGTTCTACAACTCTTTTATGATGGGATGGGATGTTGAGTCACATTCTGTA TATCATTACATAATGTTATGCAACATATTTTGTATTTTAAAACTAATCCC TGGATTTTTTAAATTGGTGAGAACATTGTAAGTCCCTTCAGCCTTTCGAA GTCGAGGAAGCTTCTTTTCCCTTTATTTTTTATTACATCTTCATTACATA ATTTGTCATGCTTTTATTTTTAGGTTCGATATTTCACAGAGTGAGCTACA GCGACGCGTTAATGAACCAGAATGCCTCACCAAAGTCGATATGATTTCTT ACGTACGTTTAGCCAAAAACACGGCACGGAATTTACTCGACCATAACGGG ATCCGTACCAATCAACATAATAAACGATCAGCGCATACCGTTCTATCGCG CATGTGCGAATCAGAATGCCAAGTTTTGGCACATGGTATCAATGATATCA ATATGAAATATTTCCCCAGACATTGGTTCGCCAAGAAATCCGTGCAAGAG ATCTTATTGGCTGAAGAATCGTTAGAAAATCCTCTATCACCAAGACAACG ACAAATGCTTTTACGTGAACGAATCGAACAAACGAAAAACGCTAGGTGAG TCTTATTATCTTATCAGACCTGCTTAGAATCAAATGGAAATTTTGTTTCT TTTTACTCAAACCTTAATTAATTCGAATCTTTCTTTGATTTTAACCAAAT CACTGGTCCCATTGTGTGAAATACGCTGAAATACGAAATTAAAGTCTAAT TTCAAGTCTTATCTAATTCGAAGACAAATTTAGTCCCTTTGACGTCAAAC TAGAGAGATAGTCAATCTGTACTGTTAAAACTCTGAAATCCTCATAAAAA AGATGTCTAAAAAGTTTGTCAGTTTTTCTACCGACTGCTTATCCATTTTT GGCAAGGTATCTTGTTGTTTGCTGCAATTTTATTCTAAGGAGGCTCTCTT GGAGGTCGAGTTAGAGAGAGTCGAATGAACTTTGAGATCTGAAATCATAA TAAAGATAATTAAGATAAATATCATTACCGTTTTTTACTTTCATTTTTCT AGGTGGATGTTTTTGGATTTCATCAAAGGCCTCGAACGACGTGCTCAAGA TGATGAAATGAAAACATTCAATTTGATGTCGCATACTTTTGGTGTTTCCA ACTTGATCAATCATAATTTATTCATGTTTCATTTAATGGAAGAAGAACTT AAAGTTTTGCAAAGTTATTTGTGA

Coding sequence (CDS) from alignment at sc0000239_pilon:163967..166940-

>XLOC_044364 ID=XLOC_044364|Name=XLOC_044364|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2406bp|location=Sequence derived from alignment at sc0000239_pilon:163967..166940- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCATTCTTGACAGCAAATCCTACTGAAAACAACCATCATAAAAGCAG
AGACGAAGAAATGAGAACGTTATTCCATTCACTGAATCACGATATTCTAC
GACAGCAAATCTACGATCCACCGACACCGCCTCTTACGCCTGAATCACCT
CTTCATACATCAACCAATCATTTGCCATCTTTAAGAAGTCCTACATCCAG
TGAACCAACATCAACTTTCATGCCGCGTTACACGAGATCACAATCATACA
CGGTGGACGCCCATCCTCGCTACACGCATACATCACAGCACACTTCGTGT
AAATGCTGCCCTCGTCCCTACACTAACGCCCACCAACCACGTGACTATTA
CCGACGCCCTTCAACTCATCTTTATCCTTCATCATACAAGCACCATTACA
CGCCTTCAACAACAGATATCGCGCCATCGCATCCCGCCTTCTCACCCACA
ACAACCGCCACGAATTTAAAACGAAGATTCGAGGACGAAGATTGTTTCCC
TCCTGCCAAGAAAATGAAACTGATAAACGAAGACGGCGACAATGGCAAAG
ATAACCCGCAAAAACATAACAGAAATGAAAAAGGACAACTTTTGAATACT
CGTAAAATCGCATGTCAAGTTCAAGGATTACTCAGTCTTCCTGGAGCTCG
TGAACCAAAATGTCATTCTTGACAGCAAATCCTACTGAAAACAACCATCA
TAAAAGCAGAGACGAAGAAATGAGAACGTTATTCCATTCACTGAATCACG
ATATTCTACGACAGCAAATCTACGATCCACCGACACCGCCTCTTACGCCT
GAATCACCTCTTCATACATCAACCAATCATTTGCCATCTTTAAGAAGTCC
TACATCCAGTGAACCAACATCAACTTTCATGCCGCGTTACACGAGATCAC
AATCATACACGGTGGACGCCCATCCTCGCTACACGCATACATCACAGCAC
ACTTCGTGTAAATGCTGCCCTCGTCCCTACACTAACGCCCACCAACCACG
TGACTATTACCGACGCCCTTCAACTCATCTTTATCCTTCATCATACAAGC
ACCATTACACGCCTTCAACAACAGATATCGCGCCATCGCATCCCGCCTTC
TCACCCACAACAACCGCCACGAATTTAAAACGAAGATTCGAGGACGAAGA
TTGTTTCCCTCCTGCCAAGAAAATGAAACTGATAAACGAAGACGGCGACA
ATGGCAAAGATAACCCGCAAAAACATAACAGAAATGAAAAAGGACAACTT
TTGAATACTCGTAAAATCGCATGTCAAGTTCAAGGATTACTCAGTCTTCC
TGGAGCTCGTGAACCAAAGTTCGATATTTCACAGAGTGAGCTACAGCGAC
GCGTTAATGAACCAGAATGCCTCACCAAAGTCGATATGATTTCTTACGTA
CGTTTAGCCAAAAACACGGCACGGAATTTACTCGACCATAACGGGATCCG
TACCAATCAACATAATAAACGATCAGCGCATACCGTTCTATCGCGCATGT
GCGAATCAGAATGCCAAGTTTTGGCACATGGTATCAATGATATCAATATG
AAATATTTCCCCAGACATTGGTTCGCCAAGAAATCCGTGCAAGAGATCTT
ATTGGCTGAAGAATCGTTAGAAAATCCTCTATCACCAAGACAACGACAAA
TGCTTTTACGTGAACGAATCGAACAAACGAAAAACGCTAGGTTCGATATT
TCACAGAGTGAGCTACAGCGACGCGTTAATGAACCAGAATGCCTCACCAA
AGTCGATATGATTTCTTACGTACGTTTAGCCAAAAACACGGCACGGAATT
TACTCGACCATAACGGGATCCGTACCAATCAACATAATAAACGATCAGCG
CATACCGTTCTATCGCGCATGTGCGAATCAGAATGCCAAGTTTTGGCACA
TGGTATCAATGATATCAATATGAAATATTTCCCCAGACATTGGTTCGCCA
AGAAATCCGTGCAAGAGATCTTATTGGCTGAAGAATCGTTAGAAAATCCT
CTATCACCAAGACAACGACAAATGCTTTTACGTGAACGAATCGAACAAAC
GAAAAACGCTAGGTGGATGTTTTTGGATTTCATCAAAGGCCTCGAACGAC
GTGCTCAAGATGATGAAATGAAAACATTCAATTTGATGTCGCATACTTTT
GGTGTTTCCAACTTGATCAATCATAATTTATTCATGTTTCATTTAATGGA
AGAAGAACTTAAAGTTTTGCAAAGTTATTTGTGAGTGGATGTTTTTGGAT
TTCATCAAAGGCCTCGAACGACGTGCTCAAGATGATGAAATGAAAACATT
CAATTTGATGTCGCATACTTTTGGTGTTTCCAACTTGATCAATCATAATT
TATTCATGTTTCATTTAATGGAAGAAGAACTTAAAGTTTTGCAAAGTTAT
TTGTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044364XLOC_044364-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000239_pilongenomesc0000239_pilon:163967..166940 -
Properties
Property NameValue
Aaloc1033-1203:172
Aaloc661-1029:1001
Aaloc1-657:2975