XLOC_044363 (mRNA) -

Overview


Name	XLOC_044363
Unique Name	XLOC_044363
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000239_pilon:155040..159800-
coding sequence from alignment at sc0000239_pilon:155040..159800-

mRNA from alignment at sc0000239_pilon:155040..159800-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_044363 ID=XLOC_044363|Name=XLOC_044363|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4761bp|location=Sequence derived from alignment at sc0000239_pilon:155040..159800- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAAGCTGATCTTTGCCCTGCTACTATGCATGAATTTGATGGAAGT
GTGGAGTATCAGAGGTCGAATCACAAGTAACGAGCGATATTGCGTCCCTC
AACCCTACAAACCAGGCGGTGGAATCCGAAAAGTACAAGACATAAAGGCC
CCACAAGCTACTCTTAAAACTACAGGCTTTCTCGGTGTTATTGCAAAAGG
TGCTAAGAAGACAGGAGATGCGGCCAAAGTAGCGACAAAGGTTACAACAG
AGTTCGCGAAATTCGGTAAATTGTTTAAAACTGCATCCAAAATGGCACCA
TGGTTAGGTGTCTTAAGTGGAGTTTTGGGATTTCTGGGACAAACGCCTTC
TGTTGGAGATGCTATAAAAGCTGTTAATAAAGCGTTTAAAGAATTTGCTG
ATGAAATCACCAAGAGAATGAATGAAATGAAAGGATATGTGGATGATAGT
ATTTTGAAAAAAGAAAGCGAATGGGTCGAAAAAGAATTGAAGGTGTTGTT
TAACGGTTGGGCGGACTGTATTGTTTATTATCATGACGAAAGCGATGTGA
ATGAATGCCAAAGAAAAGCTTTTATGGATATCCGAAAAAATCGCGCCCAT
TTCATGCTGTTTAGTGGTAAAAACCCGACCCGTAAAGAACTCAAGAGATT
GGAATTTCAATTTGTCTCTATCAGAGACTACTCTTTCTTAACCCTCCTCG
TTCTACGTTCTTTAATCGATAGTTTTAAAGCCGAAAAAGGAAAAGAGAAG
GATTATGAACGTCTCCTGAAACAAGGAATGGTCATTCCTGAGGAACTTGC
TGACTATGCAAACTTTGTTAACAATGAAATTCTTGATTTTTATGATACGG
GGACAAAAAGCATTTGTAGGGGTACTTTTACGTGTGGTAAAATGGACACA
AAATACAGAACTGTCTTTGGCTTCGGTCGTATAAAACCGTTACGGTACCC
AGTTCACCGTCAAATGGAATGCAAATGTAAAATGATTCCAGATGCTGCAA
ACCACGAATGGTGCAAATACAAAATTGAACTTGATATCAACAACGCTCCA
CCAGGAGAAGGTGAATATTGGAAAGACCATTCCAACTTGGAAAGGAGAGG
TGAAAAAGATCTTTTCGCATTATCAGACATTTACTGGAAGGAGACATCAT
CGGTGGTTCGCAAGTATTGGTATGAAACAGTGATGGTTCAAGTTCCTAAA
TGGGAGGAGTTTGCAGTTCAAGCTCAAAAAGAATACGAAGAATTCAGAGG
TATAATAATATATTTTCACAAATAGATAGAGTCGGGACCATATATATAAA
GCCCGAAGGGCTAAATTTCGTGCTTTTAGCCATCGCAGACAAAAACAAGT
GAATATCAGAAATAATATTGCTGCTATTGTTTTCGAACACCCGCGAAGCT
TCTGATTGGTCAAGCGCTGAAATTCTTTTGTGGGAAGGGTAGACTGATAG
ATAGTATATATTTTACGATGTAGTATCGATCTGCGACTTTTTGAGTAGTC
TTTCGATTAGGAATCCACATCAACCAAGCTTGGCTGTCTATGAAAAAATT
AAAAACGGTAGATACTGAGTCAGGATTCTTTAGTTTGCAGGCCTGATGTC
TTAGACCTCTTGGTCAACCCCCCCCCCTTTTTTCTAAAAAAAAAACATCA
TTTTTTCAGGTGGGAATCTTGCTTTGAAAAGACCAACTATTCAATCAAGT
GGAGATCCCGAAAGATTACCAGCATCAGTCGATGGTTATACTAAGTATTG
TCATTCACCATATGTTGTTTCGACGACTGAAGCTGGTAGGAATCAATGGT
GGAAAGTGATTTTGGATGGTGTCTATGAAATCAATACTGTTATTTTTTAC
AATCAAGTTGATACTGATCACTCTGGGCAGTTATCAAATGTCGATATCTA
TGTTTATGATTTCGGTGGGAAAAGAAGCCTTTGCGCTAATACTGGTGATA
TGAAAAATGTTTACATCAGACAATTCGAATGCAATGCTGGAGCTATTGGT
AATGTTGTGATGCTCTCCAAGATGGATGAAGGTAGCATTCGTTTATGTGA
AGTGGTTGTATACGGAGAAAAGGGTAAGTTTGATCATATGAAAGCTAATT
GAGAATATTGATTTGTATTTTCGCAAAAAAAATTTGTTGAATCATTTTAA
GTACTTTTCACTACTTTGATATATTTTTTGACTAATAAAAAACAAGGTTT
TAGATTATATTGAGGCCTTATTTTTACGGATTTGTCTGATAAATGAAAAT
TAATTGAAAAGCCAGTAATTTACTGTAATGGAGAAAACGCCAAGAAATTG
GGATTATTAGAAGAATTGGAGTACGGTACCAAAATGGCGAAAACTCAGTT
GCCGTGAATTTCAACTTTGTGCACTAATTATACAATAACTTATCGGGAAA
AAATGTCGAGAGAAAGTGACAAAAATTTTGAGGGGGTGACGAAATTTTTC
CCCGACGAATTTTTCCCGCCCAACTAATTAAAACACCGACATCTTTTCCC
CGATAAGAATATACGACTTATAAATAAATCGAACATAAATCATAGCAGTA
GAGATTATAATTAAAAGTTTTAACGGCAAAGAAAACACTTCAGCTCAACC
AAAATACTAAGCTAAAATTTACTGAACTTTATTTCTACATTTTAGTGAAG
AGAAATGGTCAAAATCTTGCATTAAATCGCCCGACATTACAGTCAACAAC
CACTGGACAACATTCCAGTTCTCATGCTGTTGATGGTCAAAAATCAAAAT
GTTCACTTTCTGAAAATACCTGTTCAAAGACTGAAATTGCAATATCTGGC
AAAAGAAGTTGGTGGGAAGTAGCTTTGGATCAACCATACCATGTTGACAG
AGTTATTATTCATGGATGTGGAAATTCTCTTTCTGATATCATTATATTCG
CTATTGATGAAGAGACCATTGAGACCGAAGAAGATTGGCGTGAACGCCCA
CGAAGAGATATATACGAAGGGCGTAAAGGGCAAAAAGTTTCAATGTGTAA
ATACCTCGCAAATGTTGATGAAACAGCCTCTGTTCACAATATCAAATGCG
ATCAACCAGCCTATGGGAACATTCTACGGATTGCGAAGAGAAATCGAAAT
GACGAATATTTGCAGTTGTGTGAAGTCGAAGTTTACGGACATTTATGTAA
GATCATTTTTCTTCCTTTTTCTGTTCCTCTTTCCAACGACATTACAAACT
CCTTTATCGTACTAAAAGTTATCAGGTTTATTTTTTGGAAAGTGAATAAC
ATATTCCAATAAATTTTACTTCTTTTTTTACACCAACTGGCTAACTGGCT
TATTGTACGAATAGTGGGTCCTAGGACCTTTTTTAGTACTGATAGATAGA
TAAATAAAAAACATATCAGTGGATTACTGATACAAAGCATTTTTAGATAT
TTAAGGGTTTTTTGAAAGGATTTTTTAAACTATTATTTTATTCTGATATT
GAATTTTCTTACCATAGTTAAAAGTGAAGAAGATTCTGACAATGTTGCTT
ATCACGGAATAACCAAACAATCAGGTGACCAATCGAGTCAAAGTGGCAGC
CATCTTGCTGTCAATGGTAACCACGTGAATTGCAGACTTACAGAACACAC
TCTTAGTATCACTGAGTCAAGTTCTGATAGTTGGTGGGAAGTTCAACTAC
ATTCGTTATCTTTAATCAAAAGTGTTATCATTTATAACCGAGAAGATTGT
TGTGGTGATCAATTATCAGATGCCACTATTTATGTTAACTTCATCTCCAA
TGATGCAATGCGTGCGTCAAACCCACCATTCAATCAGACTGGAAATATGG
AGGGCGTAAAAGCAAAAGAGTTTACTAACGAACGAAGATTTTTCGGTGAA
GTTGTGAAGATAGAGAAAAAGAAACACGATGCCCCGCTATCATTATGCGA
AGTTGAAGTTTACGGAAAAACAGGTTAGTTTTCAGTTCTTCCAGTTCATC
AGAGAGAAATTAGAATACACCTTTTCGACCGTAGCCGCCTATTACCGCGC
GGGCATTTTTTGTCCGCTTTATCCCACTAAAACCGTCCCAGTCCTTTTTT
CGCACCTATAGACAAAAGAAAAATGTTTCCAAAAAGGATTAGATCGAGTT
TAGGGCGATTACGGTCGAAAAGGTGTTTTGACTCTATCAACAAACTGAGT
GCTACCTACCATCAAATCAAGCTTTCATGTCTGAGCACTTTCTTAAAAAT
ATTTGGAATTTGTTAACTGAGTGAGGTTCGGTATAAGATATAGTCAGAGG
GCTTGGTTTTAACTCTTTTTTGTTATACTGTTGGTGAGAGAGTCAGATAG
CACCTACATCCCCTTCGCTTAACATTATGAAGTGACAAAATTATAAATTT
TGTTCAATTTTTTGTTCATTTTTTGTTTTCTTTCCTTTCTGAAACATCCT
CTTTTGATGTGATGTGAAAATTTTCAAAAAATCATTACGCACGCAAAATA
CTCAAGATTTCTAAGCTAATCAAAATTCCTGGTGAGCAAATCATTTGAAG
CTTTTGAGGCAATTCATCGTTCTTTATTTCTATCACCCTCTCTATTTGTT
GTGAATTTGGTTCTCCCCTTTGAGTTTCCATGATCATGCGAGTACTTATT
TTTGTTTTCTAGTTACGGAACAAGAGAAGAATAAAATGGAACGAGCAGAA
GATTGTGAACGTTACAAACAAAAGGTTGCAAAGATGAAAGCTGAAGGAAG
AAGTAGAAAATCCATGAGAGGTGTATTATCACGCATGACCTTTTTCTGCT
CCGGTGCTTAA

Coding sequence (CDS) from alignment at sc0000239_pilon:155040..159800-

>XLOC_044363 ID=XLOC_044363|Name=XLOC_044363|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5538bp|location=Sequence derived from alignment at sc0000239_pilon:155040..159800- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGGAAAGCTGATCTTTGCCCTGCTACTATGCATGAATTTGATGGAAGT
GTGGAGTATCAGAGGTCGAATCACAAGTAACGAGCGATATTGCGTCCCTC
AACCCTACAAACCAGGCGGTGGAATCCGAAAAGTACAAGACATAAAGGCC
CCACAAGCTACTCTTAAAACTACAGGCTTTCTCGGTGTTATTGCAAAAGG
TGCTAAGAAGACAGGAGATGCGGCCAAAGTAGCGACAAAGGTTACAACAG
AGTTCGCGAAATTCGGTAAATTGTTTAAAACTGCATCCAAAATGGCACCA
TGGTTAGGTGTCTTAAGTGGAGTTTTGGGATTTCTGGGACAAACGCCTTC
TGTTGGAGATGCTATAAAAGCTGTTAATAAAGCGTTTAAAGAATTTGCTG
ATGAAATCACCAAGAGAATGAATGAAATGAAAGGATATGTGGATGATAGT
ATTTTGAAAAAAGAAAGCGAATGGGTCGAAAAAGAATTGAAGGTGTTGTT
TAACGGTTGGGCGGACTGTATTGTTTATTATCATGACGAAAGCGATGTGA
ATGAATGCCAAAGAAAAGCTTTTATGGATATCCGAAAAAATCGCGCCCAT
TTCATGCTGTTTAGTGGTAAAAACCCGACCCGTAAAGAACTCAAGAGATT
GGAATTTCAATTTGTCTCTATCAGAGACTACTCTTTCTTAACCCTCCTCG
TTCTACGTTCTTTAATCGATAGTTTTAAAGCCGAAAAAGGAAAAGAGAAG
GATTATGAACGTCTCCTGAAACAAGGAATGGTCATTCCTGAGGAACTTGC
TGACTATGCAAACTTTGTTAACAATGAAATTCTTGATTTTTATGATACGG
GGACAAAAAGCATTTGTAGGGGTACTTTTACGTGTGGTAAAATGGACACA
AAATACAGAACTGTCTTTGGCTTCGGTCGTATAAAACCGTTACGGTACCC
AGTTCACCGTCAAATGGAATGCAAATGTAAAATGATTCCAGATGCTGCAA
ACCACGAATGGTGCAAATACAAAATTGAACTTGATATCAACAACGCTCCA
CCAGGAGAAGGTGAATATTGGAAAGACCATTCCAACTTGGAAAGGAGAGG
TGAAAAAGATCTTTTCGCATTATCAGACATTTACTGGAAGGAGACATCAT
CGGTGGTTCGCAAGTATTGGTATGAAACAGTGATGGTTCAAGTTCCTAAA
TGGGAGGAGTTTGCAGTTCAAGCTCAAAAAGAATACGAAGAATTCAGAGA
TGGGAAAGCTGATCTTTGCCCTGCTACTATGCATGAATTTGATGGAAGTG
TGGAGTATCAGAGGTCGAATCACAAGTAACGAGCGATATTGCGTCCCTCA
ACCCTACAAACCAGGCGGTGGAATCCGAAAAGTACAAGACATAAAGGCCC
CACAAGCTACTCTTAAAACTACAGGCTTTCTCGGTGTTATTGCAAAAGGT
GCTAAGAAGACAGGAGATGCGGCCAAAGTAGCGACAAAGGTTACAACAGA
GTTCGCGAAATTCGGTAAATTGTTTAAAACTGCATCCAAAATGGCACCAT
GGTTAGGTGTCTTAAGTGGAGTTTTGGGATTTCTGGGACAAACGCCTTCT
GTTGGAGATGCTATAAAAGCTGTTAATAAAGCGTTTAAAGAATTTGCTGA
TGAAATCACCAAGAGAATGAATGAAATGAAAGGATATGTGGATGATAGTA
TTTTGAAAAAAGAAAGCGAATGGGTCGAAAAAGAATTGAAGGTGTTGTTT
AACGGTTGGGCGGACTGTATTGTTTATTATCATGACGAAAGCGATGTGAA
TGAATGCCAAAGAAAAGCTTTTATGGATATCCGAAAAAATCGCGCCCATT
TCATGCTGTTTAGTGGTAAAAACCCGACCCGTAAAGAACTCAAGAGATTG
GAATTTCAATTTGTCTCTATCAGAGACTACTCTTTCTTAACCCTCCTCGT
TCTACGTTCTTTAATCGATAGTTTTAAAGCCGAAAAAGGAAAAGAGAAGG
ATTATGAACGTCTCCTGAAACAAGGAATGGTCATTCCTGAGGAACTTGCT
GACTATGCAAACTTTGTTAACAATGAAATTCTTGATTTTTATGATACGGG
GACAAAAAGCATTTGTAGGGGTACTTTTACGTGTGGTAAAATGGACACAA
AATACAGAACTGTCTTTGGCTTCGGTCGTATAAAACCGTTACGGTACCCA
GTTCACCGTCAAATGGAATGCAAATGTAAAATGATTCCAGATGCTGCAAA
CCACGAATGGTGCAAATACAAAATTGAACTTGATATCAACAACGCTCCAC
CAGGAGAAGGTGAATATTGGAAAGACCATTCCAACTTGGAAAGGAGAGGT
GAAAAAGATCTTTTCGCATTATCAGACATTTACTGGAAGGAGACATCATC
GGTGGTTCGCAAGTATTGGTATGAAACAGTGATGGTTCAAGTTCCTAAAT
GGGAGGAGTTTGCAGTTCAAGCTCAAAAAGAATACGAAGAATTCAGAGGT
GGGAATCTTGCTTTGAAAAGACCAACTATTCAATCAAGTGGAGATCCCGA
AAGATTACCAGCATCAGTCGATGGTTATACTAAGTATTGTCATTCACCAT
ATGTTGTTTCGACGACTGAAGCTGGTAGGAATCAATGGTGGAAAGTGATT
TTGGATGGTGTCTATGAAATCAATACTGTTATTTTTTACAATCAAGTTGA
TACTGATCACTCTGGGCAGTTATCAAATGTCGATATCTATGTTTATGATT
TCGGTGGGAAAAGAAGCCTTTGCGCTAATACTGGTGATATGAAAAATGTT
TACATCAGACAATTCGAATGCAATGCTGGAGCTATTGGTAATGTTGTGAT
GCTCTCCAAGATGGATGAAGGTAGCATTCGTTTATGTGAAGTGGTTGTAT
ACGGAGAAAAGGGTGGGAATCTTGCTTTGAAAAGACCAACTATTCAATCA
AGTGGAGATCCCGAAAGATTACCAGCATCAGTCGATGGTTATACTAAGTA
TTGTCATTCACCATATGTTGTTTCGACGACTGAAGCTGGTAGGAATCAAT
GGTGGAAAGTGATTTTGGATGGTGTCTATGAAATCAATACTGTTATTTTT
TACAATCAAGTTGATACTGATCACTCTGGGCAGTTATCAAATGTCGATAT
CTATGTTTATGATTTCGGTGGGAAAAGAAGCCTTTGCGCTAATACTGGTG
ATATGAAAAATGTTTACATCAGACAATTCGAATGCAATGCTGGAGCTATT
GGTAATGTTGTGATGCTCTCCAAGATGGATGAAGGTAGCATTCGTTTATG
TGAAGTGGTTGTATACGGAGAAAAGGTGAAGAGAAATGGTCAAAATCTTG
CATTAAATCGCCCGACATTACAGTCAACAACCACTGGACAACATTCCAGT
TCTCATGCTGTTGATGGTCAAAAATCAAAATGTTCACTTTCTGAAAATAC
CTGTTCAAAGACTGAAATTGCAATATCTGGCAAAAGAAGTTGGTGGGAAG
TAGCTTTGGATCAACCATACCATGTTGACAGAGTTATTATTCATGGATGT
GGAAATTCTCTTTCTGATATCATTATATTCGCTATTGATGAAGAGACCAT
TGAGACCGAAGAAGATTGGCGTGAACGCCCACGAAGAGATATATACGAAG
GGCGTAAAGGGCAAAAAGTTTCAATGTGTAAATACCTCGCAAATGTTGAT
GAAACAGCCTCTGTTCACAATATCAAATGCGATCAACCAGCCTATGGGAA
CATTCTACGGATTGCGAAGAGAAATCGAAATGACGAATATTTGCAGTTGT
GTGAAGTCGAAGTTTACGGACATTTATTGAAGAGAAATGGTCAAAATCTT
GCATTAAATCGCCCGACATTACAGTCAACAACCACTGGACAACATTCCAG
TTCTCATGCTGTTGATGGTCAAAAATCAAAATGTTCACTTTCTGAAAATA
CCTGTTCAAAGACTGAAATTGCAATATCTGGCAAAAGAAGTTGGTGGGAA
GTAGCTTTGGATCAACCATACCATGTTGACAGAGTTATTATTCATGGATG
TGGAAATTCTCTTTCTGATATCATTATATTCGCTATTGATGAAGAGACCA
TTGAGACCGAAGAAGATTGGCGTGAACGCCCACGAAGAGATATATACGAA
GGGCGTAAAGGGCAAAAAGTTTCAATGTGTAAATACCTCGCAAATGTTGA
TGAAACAGCCTCTGTTCACAATATCAAATGCGATCAACCAGCCTATGGGA
ACATTCTACGGATTGCGAAGAGAAATCGAAATGACGAATATTTGCAGTTG
TGTGAAGTCGAAGTTTACGGACATTTATTTAAAAGTGAAGAAGATTCTGA
CAATGTTGCTTATCACGGAATAACCAAACAATCAGGTGACCAATCGAGTC
AAAGTGGCAGCCATCTTGCTGTCAATGGTAACCACGTGAATTGCAGACTT
ACAGAACACACTCTTAGTATCACTGAGTCAAGTTCTGATAGTTGGTGGGA
AGTTCAACTACATTCGTTATCTTTAATCAAAAGTGTTATCATTTATAACC
GAGAAGATTGTTGTGGTGATCAATTATCAGATGCCACTATTTATGTTAAC
TTCATCTCCAATGATGCAATGCGTGCGTCAAACCCACCATTCAATCAGAC
TGGAAATATGGAGGGCGTAAAAGCAAAAGAGTTTACTAACGAACGAAGAT
TTTTCGGTGAAGTTGTGAAGATAGAGAAAAAGAAACACGATGCCCCGCTA
TCATTATGCGAAGTTGAAGTTTACGGAAAAACAGTTAAAAGTGAAGAAGA
TTCTGACAATGTTGCTTATCACGGAATAACCAAACAATCAGGTGACCAAT
CGAGTCAAAGTGGCAGCCATCTTGCTGTCAATGGTAACCACGTGAATTGC
AGACTTACAGAACACACTCTTAGTATCACTGAGTCAAGTTCTGATAGTTG
GTGGGAAGTTCAACTACATTCGTTATCTTTAATCAAAAGTGTTATCATTT
ATAACCGAGAAGATTGTTGTGGTGATCAATTATCAGATGCCACTATTTAT
GTTAACTTCATCTCCAATGATGCAATGCGTGCGTCAAACCCACCATTCAA
TCAGACTGGAAATATGGAGGGCGTAAAAGCAAAAGAGTTTACTAACGAAC
GAAGATTTTTCGGTGAAGTTGTGAAGATAGAGAAAAAGAAACACGATGCC
CCGCTATCATTATGCGAAGTTGAAGTTTACGGAAAAACAGTTACGGAACA
AGAGAAGAATAAAATGGAACGAGCAGAAGATTGTGAACGTTACAAACAAA
AGGTTGCAAAGATGAAAGCTGAAGGAAGAAGTAGAAAATCCATGAGAGGT
GTATTATCACGCATGACCTTTTTCTGCTCCGGTGCTTAATTACGGAACAA
GAGAAGAATAAAATGGAACGAGCAGAAGATTGTGAACGTTACAAACAAAA
GGTTGCAAAGATGAAAGCTGAAGGAAGAAGTAGAAAATCCATGAGAGGTG
TATTATCACGCATGACCTTTTTCTGCTCCGGTGCTTAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_044363	XLOC_044363-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000239_pilon	genome	sc0000239_pilon:155040..159800 -

Properties


Property Name	Value
Aaloc	2623-2769:148
Aaloc	2167-2619:1293
Aaloc	1666-2163:2115
Aaloc	1252-1662:3101
Aaloc	1-1248:4762

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XLOC_044363 (mRNA) -