|
|
Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000020_pilon:579682..585025+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044359 ID=XLOC_044359|Name=XLOC_044359|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5344bp|location=Sequence derived from alignment at sc0000020_pilon:579682..585025+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTGTAGAAATTGATTCAACCAAACGGTATAAAAGAGGCATCAAATC
ATTTTACAGATCATCTCCTCCTTGTCATAAGCAAGAGAAGAGAGCTTTCG
TACATCTTGGAAAAATCCTTTTCATAACTTCTTTCAATCTCTTTGAAGAA
ATGGCTCAATCAATTCCATCAAAGTAAgtacaaaatgtttgattttcaga
acaaaattttttaaagcatATGACTTTGTTTGGTTTTCAAATTTAGTTAA
GGATGCTTCAGTCTGCTCTGTTTCTTTTCTTCttgctcatgttttttatt
tgtgaAAACCACATTTTAGTAAATTCCGAACTTTCTTAACTTTTACAGTC
CTGCTGGAGACAAATACGACCACCAATGGGAAGCTTTAGCTGGATGGTTT
CTTGGACCACGTGCTGAAAACCGAAACATCTTCAATGATTTGATGTTGAA
AGCCTTGAATTGGCATGAAGATCGACGTGAGGAGTTCTTTCCAGCCGATC
CTTCTTATTTCACGGAGGAGATCAAAAATTCCGAAGCTGCCCAACACGAG
TATAAAGATATggaaaaacaaatgaaagaaatgCATCGAGAATTGAACAA
ATCCATTCCTTTCTTCAGCACCAGATATCAGGTATGTTCTAATAATTATA
AAAGTCCCCTCTTTCCAGGCAAAGCTTCCGAAACTTTGAAGATGTAATCT
CGAAATGACTTCTCGTGAACGATTCGTTAATTGTTATGTCCTGCTGGAAT
GTTAACCAATGACGATTGAAAGCATGTCCATCCTCCGTTTTtaatatttg
aattttgttcCCTTAAACTAAATGCATGTTAGGACGGGGACTGATTTAAA
TTTATGATTACATTACATACTTTCAGGGTCATATGACATGGGACGTGACA
ATGCCTTCGTTCTTGGGATACGTTTCCGGATTGCTTTGGAATCAAAACAA
CGTTGATTCAACTGCTTCACCAGTCACTACTAAGTTTGAAGTGGAAGTTG
GTCAACAACTTTGCAAATTGATGCGATTTGACGACACCAAAGTCACACCA
TGGGGTCATTTGACAGGTTGTGGATCAGTCGCTAATATTGAATCGATGTG
GGCTGCAAGAAACACCAAATTACATCCATTGGCTTTGAAAGATTCTTGTG
CTGACCCTGATTTCCCCGAGTTAATTGGTATGTTATTTAAAATGAGCGTT
TTTCTAATTCAACAGATGAGGCTAAAATACCTGCTTTGGGACAAGACATT
TTACATAGGATATTTCGCATATTTGGAACAGTAGATTTCAATTTGGTGCT
AGTTCATCGCCGTTACGTTTCGGATTGCCATGTGTTTATAAATAGTTGTC
AATTTTATGTTGATAGTGCTATATTTTAAGCATTCCCCAAACTAAGGTTA
ATAGAATTTTAATCTTAATTTCCAGACGGTTTGGAGTGCAAAGTGTTTGT
CCCTGgtcaacaaaaagaaaagactttgaaagaatGCACCGAATGGGAAT
TATTAAATTTGAGAATTGATGATATTTGTTCTTtgactgatgacgtcatc
aaacgcATCGAAGAGATAAATCCAGATtttaaaattgacgtcaaagcaAC
GATCGACAAATCTTTGGAGGTAAAAATTTGTACTTTGAAtttggtgaagg
cttcttcgtaaaagcgaAGCATGTatctttcgtctttacgaagaagccac
gacctttGAATTTCAACCCTTGATTTGATTATCATTACTTTTAAAAGGAG
ACCAagttatacacccctgtctcacagccccggtggaacattTATCCTTA
gtgaggataaaaatttctattgaaatcccaacaggggataaaaaatctat
tgttcaaaggttaaaaaaatccagtggggatggctTTGGATggtaatttt
caaatatttaatttctaGTGGGTGAAGTATAAGTTAATTTCCCAGTGAgg
ctaaaattccagggtatttttctatcgggacaaaatttttgccaaatttt
ccagtagagCTAAGGTCCTAGCGGGTGTGCGACACAGGGGTGTAGTTCCG
AGATGggtttttctctttgtttgtttgaaaaactctGTCTTTTCCATTTC
CATGATCTTATCTTCGGAAAATTTGGTAAGCCAACCTTCACTTTTTCATT
CAGAAAAATTCACCAGTGCAACTTGGCTTACCAGAATTTTACCGACGACA
CAAGATAGGTGAACCAAGCATCAAAGATGCAACAGTGAGAACATATCCAA
GAGTCTTTTCACCAGGAACAAACCATTATTCATGGCCCAAAGCATCCACC
ATTCTTGGTATCGGTGATTCTAATAACATTCACATTCAAGTTGACAGCAA
AGCTCGTCAAGATATTGAAAGTAAGTTCATTTATCTTTCTGTAAGACGAA
GCTTCTTTTTCGCAGTcggtaaaaaatcataaaaaggaCCTGGTGACTAT
TTAAATCAGCTCAGTCTGTAAGGCATTGATACTCTAACGCAGTCAAAATA
CCACAAAGTCTCTCTGGAGAATCTTCTAAAGTTTTACCTGACACGATTCT
TCAAAGTTTATCTTCTCACCAACAGCTCTGGAGAAGGAATTGGATTATGC
ATTGGAACACCAGATTGCAGTGTTCATGGTAGTGGCAGTGATTGGTTCAA
CAGAAGAAAGTGCTGTGGATGATATCGCAAGAATCTTGACTCTCAAACCA
AAATATGAAGCGAAGGTATAAATCGAGTGTTTCGATTCTCCCATGTTAAA
ATAGTGAAAAACATCTGCCTATCCGGATTCGGTATATTGCAACCAACGAG
CCTGAATGGAGTGAAATTGAGTTGTCCTTCATTTTAAGTATCTCTACACT
TTTTGCACAATAATTCAACGGTACAACGCTCAATTTCGTATTAAACTGTC
ATCTTTTCTAGCCTGTGACCTTTTTTAATTCAtctcaaatgtttttcaat
catttttttccGAATTTGACATCTATAAACTGATTTTTCCAGGGTTTGAC
ATTTTCGGTGCACGCAGATGCAGCATGGGGTGGATATTTGAATTGTATGA
CCCACGAAACTGGTGACAAGGAAAGCAACGTTTATTCCAATTGTCTTCCA
ACAAAAGCTCATGATTTCGTTCCTGCTATTCCACTTTCTGATTTCGTCAA
GAAACAATATGTCAGTTTGCAGTACGCTGATACAGGTGAGAAACGTTATT
GATCGAATTTCACATTGTTTGGACTCTCAGAAGATAGAACCTAATCTGAC
GGGAATGCTCTAGTACTTTTCTTTATAAgtaatttagtttttttctaacg
gaagcacccgaaaaaGTTTGGATTTTATCCTGGTCTGTTACTAAAAATGG
AAACACAGTGGTCAAcattaagattttttaatttttctatttcctAAAGA
AATTTTAACGTCATCTTGACTAACGCATATTAAGAATTGACGAAATTGGT
GCTTTACAGAAAATACGTATGGAGTTTTGATTccttgattttaaaaatta
cctCTTTAATCTCAGTGACCATCGATCCACACAAGTCTGGATTTTGTCCT
TACCCTGCCGGTGCTCTTCTCTATCGAAATGGAACAATGAAAGGTTTCAT
CACACTTGCTGCACCAGAAGTTTTCCATAGTCCTGATGATTTGAATGTTG
GAATTTATGGTTTAGAAGGATCGAAACCTGGAGCTGCAGCTTGTGGCGTT
CTCTTGTCTCACCGGGTAAGGTCGAAAATCGGTAATTAGGCTAGACTTTC
AATTCGTACATAGGGTTAGGCTTATTGTACtattctgagaaatttgaagg
TAACTCAATAATgggggggACTAACGTATAGTCCTGATTTTTAATAAGGA
GTACGACTTAAAGAAACAAGCACTCTCCGTCAATTATTTTGAACCCATTT
CAGATCTGCCTGGCTTTTTATTTCCTCTCATTGGACTCCTTAAGGACTAA
CTGAATATCAAAGTTATCTGGCATTTACAGGTAGAAATGGCGATATAGCt
atttaaagataaaaagatGATGAACAGTTTTTCACTTATTGCTCTCTTTA
CTAGGTCATCGGATTGGATCAAAACGGTTACGGTCGAATTCTTGGTCAAT
GTCAACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACAGTCGCCAGA
GATGACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGATTTGaaaga
attaaaagaaaaaggatTCGCATTCAAAACGCAACAAGATGTCCATGACT
ACATCAAAAAACATATCATTGATAAACCAAATGAACAACTTGTCAAGAAT
GTCCACAAAGAAATTGATTTCTTAGGAATCGTTGGTCCTGACGCCTTGAT
TAATTCGTTCACCGTTAACTGTAAGGATCAAAGCACTGGCAAAGGTCAAC
AAAATATCGAGTTAGTCAACGATTTGCAAAATCTCGTCTTCAACGAATTG
ACTTGTAAGTGTTTCAAATCgacttaaatttttttccatcTTGAAGAATC
TGAACGTCTGAATTCGTCctttaatttttacaattttcactAATAAGGCT
TTTTTCGAAAGTAAAATGCTGGGATTTCTCCAAGCATATGGAGAACGAGT
CAGAGTTGTAATACTTTGGAAGATAATCAACATGTTACTCAAGTTTTATC
CACTGTTTCTTTTAAGCGAGTGTTGGTGAGGACACAAAACGAGTCAAAAT
GTTCTTGACAACTTCCAAACTGGAATACGCAAATTATGGAAAATCCGTCC
AACAATTGAAGGAGAGATTGAATTTACCGACAGAAAATACCCATGATGCA
CTTGGATTCTTGAGAAACACTTGTATGGAACCATATCAAGCAAGCGAAGC
TTATGTGGAAGTTCTTGGTGATTTATTCAGAAAGACTGTCCTCACTTGCA
TCGGTGCTGTAAGTATCAGATAATTAACCCTTACAAATATGTGAATTATC
AAGCCGATTCCTTTAAACAGAAATTATTGAATATTCATGACGAGAAtaat
ttgaaagcttttgaaaaataaaacctaATACTATTCTCGTGACATGATAT
TTTATAGAATTTTACTTAAAACCATACCATTCTCTTGATTTCGATCCAAA
GATTACTAAACAATTTAATATGAAAAATGACTCGCAATggctgaaaatta
aaacatgtaTTCTCTTTAAGCTTGACACATTATACGGAGAAGAATACGGA
GATGCTTTGGATTATCACACGTTCACTGTTGTCAACAATCTTCGAAAAGA
CGGAAAAATCTTCTTGGATTTCGTCCCCACATTCACCAAGAAACAATCGC
AATATCAAGCCGTCTTCAGAGTGAAAATCCTCCCGGAAGATCAA Coding sequence (CDS) from alignment at sc0000020_pilon:579682..585025+ >XLOC_044359 ID=XLOC_044359|Name=XLOC_044359|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5034bp|location=Sequence derived from alignment at sc0000020_pilon:579682..585025+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGATTGTAGAAATTGATTCAACCAAACGGTATAAAAGAGGCATCAAATC
ATTTTACAGATCATCTCCTCCTTGTCATAAGCAAGAGAAGAGAGCTTTCG
TACATCTTGGAAAAATCCTTTTCATAACTTCTTTCAATCTCTTTGAAGAA
ATGGCTCAATCAATTCCATCAAAATGATTGTAGAAATTGATTCAACCAAA
CGGTATAAAAGAGGCATCAAATCATTTTACAGATCATCTCCTCCTTGTCA
TAAGCAAGAGAAGAGAGCTTTCGTACATCTTGGAAAAATCCTTTTCATAA
CTTCTTTCAATCTCTTTGAAGAAATGGCTCAATCAATTCCATCAAATCCT
GCTGGAGACAAATACGACCACCAATGGGAAGCTTTAGCTGGATGGTTTCT
TGGACCACGTGCTGAAAACCGAAACATCTTCAATGATTTGATGTTGAAAG
CCTTGAATTGGCATGAAGATCGACGTGAGGAGTTCTTTCCAGCCGATCCT
TCTTATTTCACGGAGGAGATCAAAAATTCCGAAGCTGCCCAACACGAGTA
TAAAGATATggaaaaacaaatgaaagaaatgCATCGAGAATTGAACAAAT
CCATTCCTTTCTTCAGCACCAGATATCAGTCCTGCTGGAGACAAATACGA
CCACCAATGGGAAGCTTTAGCTGGATGGTTTCTTGGACCACGTGCTGAAA
ACCGAAACATCTTCAATGATTTGATGTTGAAAGCCTTGAATTGGCATGAA
GATCGACGTGAGGAGTTCTTTCCAGCCGATCCTTCTTATTTCACGGAGGA
GATCAAAAATTCCGAAGCTGCCCAACACGAGTATAAAGATATggaaaaac
aaatgaaagaaatgCATCGAGAATTGAACAAATCCATTCCTTTCTTCAGC
ACCAGATATCAGGGTCATATGACATGGGACGTGACAATGCCTTCGTTCTT
GGGATACGTTTCCGGATTGCTTTGGAATCAAAACAACGTTGATTCAACTG
CTTCACCAGTCACTACTAAGTTTGAAGTGGAAGTTGGTCAACAACTTTGC
AAATTGATGCGATTTGACGACACCAAAGTCACACCATGGGGTCATTTGAC
AGGTTGTGGATCAGTCGCTAATATTGAATCGATGTGGGCTGCAAGAAACA
CCAAATTACATCCATTGGCTTTGAAAGATTCTTGTGCTGACCCTGATTTC
CCCGAGTTAATTGGGTCATATGACATGGGACGTGACAATGCCTTCGTTCT
TGGGATACGTTTCCGGATTGCTTTGGAATCAAAACAACGTTGATTCAACT
GCTTCACCAGTCACTACTAAGTTTGAAGTGGAAGTTGGTCAACAACTTTG
CAAATTGATGCGATTTGACGACACCAAAGTCACACCATGGGGTCATTTGA
CAGGTTGTGGATCAGTCGCTAATATTGAATCGATGTGGGCTGCAAGAAAC
ACCAAATTACATCCATTGGCTTTGAAAGATTCTTGTGCTGACCCTGATTT
CCCCGAGTTAATTGACGGTTTGGAGTGCAAAGTGTTTGTCCCTGgtcaac
aaaaagaaaagactttgaaagaatGCACCGAATGGGAATTATTAAATTTG
AGAATTGATGATATTTGTTCTTtgactgatgacgtcatcaaacgcATCGA
AGAGATAAATCCAGATtttaaaattgacgtcaaagcaACGATCGACAAAT
CTTTGGAGACGGTTTGGAGTGCAAAGTGTTTGTCCCTGgtcaacaaaaag
aaaagactttgaaagaatGCACCGAATGGGAATTATTAAATTTGAGAATT
GATGATATTTGTTCTTtgactgatgacgtcatcaaacgcATCGAAGAGAT
AAATCCAGATtttaaaattgacgtcaaagcaACGATCGACAAATCTTTGG
AGAAAAATTCACCAGTGCAACTTGGCTTACCAGAATTTTACCGACGACAC
AAGATAGGTGAACCAAGCATCAAAGATGCAACAGTGAGAACATATCCAAG
AGTCTTTTCACCAGGAACAAACCATTATTCATGGCCCAAAGCATCCACCA
TTCTTGGTATCGGTGATTCTAATAACATTCACATTCAAGTTGACAGCAAA
GCTCGTCAAGATATTGAAAAAAAATTCACCAGTGCAACTTGGCTTACCAG
AATTTTACCGACGACACAAGATAGGTGAACCAAGCATCAAAGATGCAACA
GTGAGAACATATCCAAGAGTCTTTTCACCAGGAACAAACCATTATTCATG
GCCCAAAGCATCCACCATTCTTGGTATCGGTGATTCTAATAACATTCACA
TTCAAGTTGACAGCAAAGCTCGTCAAGATATTGAAACTCTGGAGAAGGAA
TTGGATTATGCATTGGAACACCAGATTGCAGTGTTCATGGTAGTGGCAGT
GATTGGTTCAACAGAAGAAAGTGCTGTGGATGATATCGCAAGAATCTTGA
CTCTCAAACCAAAATATGAAGCGAAGCTCTGGAGAAGGAATTGGATTATG
CATTGGAACACCAGATTGCAGTGTTCATGGTAGTGGCAGTGATTGGTTCA
ACAGAAGAAAGTGCTGTGGATGATATCGCAAGAATCTTGACTCTCAAACC
AAAATATGAAGCGAAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCAT
GGGGTGGATATTTGAATTGTATGACCCACGAAACTGGTGACAAGGAAAGC
AACGTTTATTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGC
TATTCCACTTTCTGATTTCGTCAAGAAACAATATGTCAGTTTGCAGTACG
CTGATACAGGGTTTGACATTTTCGGTGCACGCAGATGCAGCATGGGGTGG
ATATTTGAATTGTATGACCCACGAAACTGGTGACAAGGAAAGCAACGTTT
ATTCCAATTGTCTTCCAACAAAAGCTCATGATTTCGTTCCTGCTATTCCA
CTTTCTGATTTCGTCAAGAAACAATATGTCAGTTTGCAGTACGCTGATAC
AGTGACCATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGCCGGTG
CTCTTCTCTATCGAAATGGAACAATGAAAGGTTTCATCACACTTGCTGCA
CCAGAAGTTTTCCATAGTCCTGATGATTTGAATGTTGGAATTTATGGTTT
AGAAGGATCGAAACCTGGAGCTGCAGCTTGTGGCGTTCTCTTGTCTCACC
GGTGACCATCGATCCACACAAGTCTGGATTTTGTCCTTACCCTGCCGGTG
CTCTTCTCTATCGAAATGGAACAATGAAAGGTTTCATCACACTTGCTGCA
CCAGAAGTTTTCCATAGTCCTGATGATTTGAATGTTGGAATTTATGGTTT
AGAAGGATCGAAACCTGGAGCTGCAGCTTGTGGCGTTCTCTTGTCTCACC
GGGTCATCGGATTGGATCAAAACGGTTACGGTCGAATTCTTGGTCAATGT
CAACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACAGTCGCCAGAGA
TGACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGATTTGaaagaat
taaaagaaaaaggatTCGCATTCAAAACGCAACAAGATGTCCATGACTAC
ATCAAAAAACATATCATTGATAAACCAAATGAACAACTTGTCAAGAATGT
CCACAAAGAAATTGATTTCTTAGGAATCGTTGGTCCTGACGCCTTGATTA
ATTCGTTCACCGTTAACTGTAAGGATCAAAGCACTGGCAAAGGTCAACAA
AATATCGAGTTAGTCAACGATTTGCAAAATCTCGTCTTCAACGAATTGAC
TTGTCATCGGATTGGATCAAAACGGTTACGGTCGAATTCTTGGTCAATGT
CAACTTGGTGCCAAACTGTTCTACTGCATGTGGGAAACAGTCGCCAGAGA
TGACGATCCTTTCATCTGTTGTAACTTCATTCCACTGGATTTGaaagaat
taaaagaaaaaggatTCGCATTCAAAACGCAACAAGATGTCCATGACTAC
ATCAAAAAACATATCATTGATAAACCAAATGAACAACTTGTCAAGAATGT
CCACAAAGAAATTGATTTCTTAGGAATCGTTGGTCCTGACGCCTTGATTA
ATTCGTTCACCGTTAACTGTAAGGATCAAAGCACTGGCAAAGGTCAACAA
AATATCGAGTTAGTCAACGATTTGCAAAATCTCGTCTTCAACGAATTGAC
TTCGAGTGTTGGTGAGGACACAAAACGAGTCAAAATGTTCTTGACAACTT
CCAAACTGGAATACGCAAATTATGGAAAATCCGTCCAACAATTGAAGGAG
AGATTGAATTTACCGACAGAAAATACCCATGATGCACTTGGATTCTTGAG
AAACACTTGTATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAAGTTC
TTGGTGATTTATTCAGAAAGACTGTCCTCACTTGCATCGGTGCTCGAGTG
TTGGTGAGGACACAAAACGAGTCAAAATGTTCTTGACAACTTCCAAACTG
GAATACGCAAATTATGGAAAATCCGTCCAACAATTGAAGGAGAGATTGAA
TTTACCGACAGAAAATACCCATGATGCACTTGGATTCTTGAGAAACACTT
GTATGGAACCATATCAAGCAAGCGAAGCTTATGTGGAAGTTCTTGGTGAT
TTATTCAGAAAGACTGTCCTCACTTGCATCGGTGCTCTTGACACATTATA
CGGAGAAGAATACGGAGATGCTTTGGATTATCACACGTTCACTGTTGTCA
ACAATCTTCGAAAAGACGGAAAAATCTTCTTGGATTTCGTCCCCACATTC
ACCAAGAAACAATCGCAATATCAAGCCGTCTTCAGAGTGAAAATCCTCCC
GGAAGATCAACTTGACACATTATACGGAGAAGAATACGGAGATGCTTTGG
ATTATCACACGTTCACTGTTGTCAACAATCTTCGAAAAGACGGAAAAATC
TTCTTGGATTTCGTCCCCACATTCACCAAGAAACAATCGCAATATCAAGC
CGTCTTCAGAGTGAAAATCCTCCCGGAAGATCAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020_pilon | genome | sc0000020_pilon:579682..585025 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 2344-2517:5171 |
| Aaloc | 2104-2343:4669 |
| Aaloc | 1702-2100:4055 |
| Aaloc | 1504-1701:3518 |
| Aaloc | 1309-1500:2993 |
| Aaloc | 1171-1308:2578 |
| Aaloc | 952-1167:2154 |
| Aaloc | 760-951:1428 |
| Aaloc | 457-756:877 |
| Aaloc | 175-456:350 |
| Aaloc | 1-171:1 |
|
