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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000020_pilon:629127..634350+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044355 ID=XLOC_044355|Name=XLOC_044355|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5224bp|location=Sequence derived from alignment at sc0000020_pilon:629127..634350+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGTAATAGATAGAGTAGAGTCTGCAAAACACACTTTGACAGGATC
TGGAATTGGAAAAGCTGTTTCTAAGGCTACGTCACATGAGATTATTGGAC
CTAAAAGAAAACATGTGGATTgtaagtaaaattttttttctcaagatgcT
TTATTGTTGGGCTTTTTCacattaattatttttaaaggtGACAATTCACA
TTATTTTGGATATTAACCAAAACCCTTATAGTTTTTGGCTAGACAATCCT
CcatcaaaaaataattcattctTGCACTTTTAGATTTTCTACCATGAGTC
GATttattattttgagaaaatctgaATTGCTAAACAttacaaattcaaaa
acaattggAAACAGTGTTGCCTGGCTGTGCCATCTAATTTTTTCATAAAC
CTGAAGAagttataaaatgttttctgcTAATCCAAGCTTAAGTTGAGAAG
TGTCCCATAAGCTCCAGGGGCATGTCTTGAGGGTATTTGTCTCTAGGGGC
AATTGTCCAAAAGGGTAATTGTCCGAGAATCTTATTGAAATGGGAATCTT
CCATTAGTAAGCCTAATGTGAGAAATTAAAAATCGTGTATTTTCTTTaac
cttttcatttttagatattACACATTCACTTGAAGCCACAAACATTAGTA
TTCCAGAAGTAGCCGATAGTTTGTTTGAGAGATGTAATAATTCTAGCTGG
GTAGTTGTCTTTAAATCCTTGGTCACTGCACATCACCTTATGGCTAATGC
AAACGAGGTTTGACCATTAGTAGTAACTTTTCAATAAACTGTGTTCTTAT
TTTGGTAATTATTTTCATAGGGGTCttgattttcaaagaaagttATAAAG
ATAACATTTGTAGATTGTTGTCAAGAGTTTTTAATAATTGTGATTGATTG
AACAGCGactgttatttttttgtttattgttgGTGGGCATCACTTCACAA
AGTCATagatgttaaagttttctcccttttttttcaaatttccagcgATT
CATTCAATATGTTGCTTCTCGGCAAACACCATGGATGCTACAAACATTTT
TAGATAAGGGTGGCATTCAAGGTAAATACACCAACATTTATTTACAGCAT
ATTGTTTCAAAAGTTCTCCCGTATATTACCTTTTGTTTTGTTGCACAAAT
TATTGTGCTTTCCCTGACAAAGAGTGACCAAAATATTCACGATACAAGTT
TTAGAAATATCAATTTTAAGATCTAAAAGTAATGTTCCCTgacatatttt
cttttctttctgtaGGATATGACATGTCACACGCTGTTCGTAGATATTCC
ACTTATCTAGCAGAAAAAGCATACTCATACAGACAAATGGGCTATGATTT
TTGTCGAGCAGCACGAGGGTAAGCAGCTCTTTACAGTTTTGTTCTAAAAT
CTTTTGTCATGTAGAGCGTATGTTTCATTCTGTTTTTTGTTGTAAAACTG
ACGTGGAATAAAGATGCTTGGGGCTCAAAAGCTCTACGGTTTCGTTATAT
TCCCTTTCTTAATTTTTACAGAAGAGATAAAGGAGTACTAAGAAACATGG
ACACAACAAAGGTATggctttgtatttttctttgtctTAGCACATTTTCT
ATTAAATCAAAGAACAAAAATTCTTCCGGCTGATACCGGTATGGCATCTT
TCCAGCACTTTTCCAACACTGTTGTTGAGTCCTACAATTTATAATTACAA
CCGAGAAACATTTTGACAGTAGTAGATTGTGTAACTGCTATTATTTGTTA
GAAAAGAATTTGGACTGAGTAGAAACTTTGGCAAGCAATTTGCTAGGAAT
GTGCctgtaacaaagaaaaaagtagGCAATTCGGTTGcaacaacttttct
gtttttgctggaaatttaattttaccTTTTGCGTGGCTACTATAATTACA
TTGCCGGCTCCACCAAACAAATATATCCAGCAAAAACAAGGTTGGTTTGT
TACCGGCAAAGATATTATGCCCTATGAATTGGTCACAATTATGATAAAAG
TGTTATGATATAATAGATGCACAAGTATgacttgattttgattttaaagt
acCCATTTGTCTTGTTTTCAGCTACTTAAAGCCCTTCCAGTCATACAACA
ACAAATCGATTCACTCATATCAACAGAGGTACCAAAATGattttattatc
aatttattatcgtgtttgtatgccatctttattttattttggattgttgt
tttgAAAGGGGAATCAAAAGTTACATTTTTGTAACTTAGAATTGCAAGGA
AACTTAAATACATTTACAGAATAAGTAACAAATTAATCTTTCTATTCTCT
CTTCAGATAAATTCAAACGACCTTACAAATGGTGTGATCACTGCTGCTTT
CATGCTCCTTTTCAAGGTTTTAACTTCATTCATTTGTTGAATGCATAACT
AGAAAGACCACTGAAGACCATCGACCTACCCACTCTTAAGGGGTACCTAT
CCACTCTTAAGGGAAACCTATCCACTTTTAAGGGGTACCTATCCGCTCTT
AAGGGGTACCTATCCACTCTTTATAAGAGGTACCCCTATCCACCACTCTT
AAGGAGTAACCCCCttacaaaaatttaattgaaatttttaacccCTCAGA
CCCCATTTTTTCATTGaggtgaaattttcaatctttatcCATATTTGAGG
GAAGCAATACCCCCCTTTTAGGGTGAGATTTTTGAACCCAAGGGCAATAG
CTTAATAAAACCTAGTCTTATTGTTGATTGTGTTGTACTTTTAGGATTTA
ATCAGAATATTTGCATGCTATAATGATGGCATCATCAATTTActggaaaa
atatttcgaaatgaaGAAACTGGATTGTAGAAATGCTTtggaaatttaca
aaaaattcttaTCAAGAATGGAGCGTGTTTCCGAGTTCCTGAAGACTGCA
GAGGATGCTGGAATTGATAAAGGCGACATTCCAGATTTGACAAAAGCGCC
AGGCAGTTTACTGGAAGCTTTGGAACAACACTTGACATCCCTGGAGAAAG
GAAAAAGTGCAGCGCCACCAACAAAGTAATAAGCTAAAAAGTTTCATCCC
ccattttcccaatttttccaTGATTGTACATTTGAGTACATTTTGACTgg
ggagaaaaaataaatagatttttgcaattttaaagAGAAAACACTTTTAA
ACTGGTGTGTAGGAACACAAAACTAAACTGTTTAAAACTGAGctattgtt
tttttgttcacAAGGTAGTctgatttttaatttcttaTCTTTAGACCGTT
GACATTGCCTGCATTCAGTGGTGATTCCTCTATCAGTGCTTTCTCACAAC
CAGCATCTGCCACTTTCCAACAACCACCACCAGTTCAAGCCAGTAACAAA
GAAGAAAGCGACTATTTGACGGAACAACGAAAAATATTAGAAGCTTTCGA
GAAGAAGAAACAATCACAAGATGTCGTCGTCCAACAAAATAATGTGGTGC
CCAATCCTCTTAATCCTCCAGCAAGCAAACAGCACCAACAGTCTGTCAAA
TCTCCTTTTGCTCCAAGCCAACCGTTCGCCGCCCCAAGCCAACCAGCTCA
GCAACCAACTCAGCAACCAACTCTAAACGGATCTGcttccacaaacaaca
aaccGTCAGATGATTTGTTGATGCTTGGTGGCTCCTCAAACGCGTTTTCA
GTACAAAACACAATGCCATCCTCTAACTTCGCCTCTGCATTCAACTCAAC
ACCATCTTATGGTAAGATAAGTGAAATAGTTCGAGGTCAGGGAAGCATGT
GCCTTCCGGCCCGgcgatttttatgttttgaaaaattttattatatGTCG
GTGTGTTTTGGTTGAAGAGATTTCTTGAATCCTAAATACTTGAAAATAGA
CAGTGTGACCAAACATACAATTCGAGCCTCGAATAGTTTGAAATTACTTA
AAGCTAAGCCAAGTGAATTCCGCATGAGATTCGATTTAAAAATTCCCTGT
TTACTTGATTTAACCGGTTAAGATGTTAACATTTTTCTCCTAGGTCAACC
CCAACAGAACATGTTCGCTCAGCAACAACAATCCGTCGATTTCAACAACG
CTTTTAACAACACTTCTACCTCTGCAACAGTAAACTCATCAAGCACACCA
AACCTAATTGATGATCTGTTACAACCTGAACGACCAAGCAGCTCGTCAGC
GGCTATGACCACTATGGATAGTAACGTCAGAATGACTGGAGATTTGGATA
CCGGACTTCAACGCATGGCTCAATCTCTAGGTACAACTCACTGAATTGAT
CCATGAGGAACCGCCATTAGATAACCTTTGGACCTCCATGCTTAGAAAAT
CAAGCTTACTCTTTAAGAGTGAAAGTTAATTTTGAATCCTTCACACTCGA
TCTAATTTTGTTCGAAAGGGAATACTGCACGATTGATTCATaaacatttg
tttttttataaagattacTTTGACGCGAGATAagctatttcaaaatcaat
tttgaattctttctGTTTAAAAGAGGCCATTGTATTATATGGTAGATCGT
TGATGCATTTAGTTCCCCTCcaacaattttttcaatcttttctaGACGGT
TTAAACATTAACCCCAACACAATGAAAGCGAACACTTCTAAAGGTCATCA
ATGGAATCAACGTGGTGAAACGAAACTGACTGGTGGCAATAACTACCAAA
TACGAAATGTCACACCCTCCACCCTTCCGCCCATGAACACGATGGGTGGT
ATGGGTGGTGCACCTATGGGTGGAATGCAACCGCAAGGCATGATGGGAAT
GAACAGCATGGGTATGATgggacaacaacaacaattccAAATGCAACCAC
AACAGCAATTTTACGGCATGAACCAAAGGGTATGAATATACTTCAAAAAT
TTCCATCTAAATGCTGTAgtcttttttttggggggggggatggGGTAAAA
GCTCGATGAAAGCCTATAAAGATTAGCCAAGAAACATTTTCgtggaaaaa
aatttattcaccATGTGGCAATATTGTCCCTGACCAAAACTTAAGGTCGT
CGTCATCTTAACAATTCTATTTACTTCAATTCCAGCCGGCATTCGGTGGA
GGTATGATGCAACCACAACAAGGGGGCATGTACAACGCCAACATGGGTAT
GTCTGCCAGCGCAACAGGTGGTTTCAACGGCATGCAGATGCGACCGCAAC
AACAACCTATGATGATGGGAGGAGGAATGAACTCGAACAACCCGATGATG
ATGAACAACGATCCTTTCAAATAA Coding sequence (CDS) from alignment at sc0000020_pilon:629127..634350+ >XLOC_044355 ID=XLOC_044355|Name=XLOC_044355|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=4116bp|location=Sequence derived from alignment at sc0000020_pilon:629127..634350+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGTAATAGATAGAGTAGAGTCTGCAAAACACACTTTGACAGGATC
TGGAATTGGAAAAGCTGTTTCTAAGGCTACGTCACATGAGATTATTGGAC
CTAAAAGAAAACATGTGGATTATGAATGTAATAGATAGAGTAGAGTCTGC
AAAACACACTTTGACAGGATCTGGAATTGGAAAAGCTGTTTCTAAGGCTA
CGTCACATGAGATTATTGGACCTAAAAGAAAACATGTGGATTatattACA
CATTCACTTGAAGCCACAAACATTAGTATTCCAGAAGTAGCCGATAGTTT
GTTTGAGAGATGTAATAATTCTAGCTGGGTAGTTGTCTTTAAATCCTTGG
TCACTGCACATCACCTTATGGCTAATGCAAACGAGatattACACATTCAC
TTGAAGCCACAAACATTAGTATTCCAGAAGTAGCCGATAGTTTGTTTGAG
AGATGTAATAATTCTAGCTGGGTAGTTGTCTTTAAATCCTTGGTCACTGC
ACATCACCTTATGGCTAATGCAAACGAGcgATTCATTCAATATGTTGCTT
CTCGGCAAACACCATGGATGCTACAAACATTTTTAGATAAGGGTGGCATT
CAAGcgATTCATTCAATATGTTGCTTCTCGGCAAACACCATGGATGCTAC
AAACATTTTTAGATAAGGGTGGCATTCAAGGATATGACATGTCACACGCT
GTTCGTAGATATTCCACTTATCTAGCAGAAAAAGCATACTCATACAGACA
AATGGGCTATGATTTTTGTCGAGCAGCACGAGGGATATGACATGTCACAC
GCTGTTCGTAGATATTCCACTTATCTAGCAGAAAAAGCATACTCATACAG
ACAAATGGGCTATGATTTTTGTCGAGCAGCACGAGGAAGAGATAAAGGAG
TACTAAGAAACATGGACACAACAAAGAAGAGATAAAGGAGTACTAAGAAA
CATGGACACAACAAAGCTACTTAAAGCCCTTCCAGTCATACAACAACAAA
TCGATTCACTCATATCAACAGAGCTACTTAAAGCCCTTCCAGTCATACAA
CAACAAATCGATTCACTCATATCAACAGAGATAAATTCAAACGACCTTAC
AAATGGTGTGATCACTGCTGCTTTCATGCTCCTTTTCAAGATAAATTCAA
ACGACCTTACAAATGGTGTGATCACTGCTGCTTTCATGCTCCTTTTCAAG
GATTTAATCAGAATATTTGCATGCTATAATGATGGCATCATCAATTTAct
ggaaaaatatttcgaaatgaaGAAACTGGATTGTAGAAATGCTTtggaaa
tttacaaaaaattcttaTCAAGAATGGAGCGTGTTTCCGAGTTCCTGAAG
ACTGCAGAGGATGCTGGAATTGATAAAGGCGACATTCCAGATTTGACAAA
AGCGCCAGGCAGTTTACTGGAAGCTTTGGAACAACACTTGACATCCCTGG
AGAAAGGAAAAAGTGCAGCGCCACCAACAAAGATTTAATCAGAATATTTG
CATGCTATAATGATGGCATCATCAATTTActggaaaaatatttcgaaatg
aaGAAACTGGATTGTAGAAATGCTTtggaaatttacaaaaaattcttaTC
AAGAATGGAGCGTGTTTCCGAGTTCCTGAAGACTGCAGAGGATGCTGGAA
TTGATAAAGGCGACATTCCAGATTTGACAAAAGCGCCAGGCAGTTTACTG
GAAGCTTTGGAACAACACTTGACATCCCTGGAGAAAGGAAAAAGTGCAGC
GCCACCAACAAAACCGTTGACATTGCCTGCATTCAGTGGTGATTCCTCTA
TCAGTGCTTTCTCACAACCAGCATCTGCCACTTTCCAACAACCACCACCA
GTTCAAGCCAGTAACAAAGAAGAAAGCGACTATTTGACGGAACAACGAAA
AATATTAGAAGCTTTCGAGAAGAAGAAACAATCACAAGATGTCGTCGTCC
AACAAAATAATGTGGTGCCCAATCCTCTTAATCCTCCAGCAAGCAAACAG
CACCAACAGTCTGTCAAATCTCCTTTTGCTCCAAGCCAACCGTTCGCCGC
CCCAAGCCAACCAGCTCAGCAACCAACTCAGCAACCAACTCTAAACGGAT
CTGcttccacaaacaacaaaccGTCAGATGATTTGTTGATGCTTGGTGGC
TCCTCAAACGCGTTTTCAGTACAAAACACAATGCCATCCTCTAACTTCGC
CTCTGCATTCAACTCAACACCATCTTATGACCGTTGACATTGCCTGCATT
CAGTGGTGATTCCTCTATCAGTGCTTTCTCACAACCAGCATCTGCCACTT
TCCAACAACCACCACCAGTTCAAGCCAGTAACAAAGAAGAAAGCGACTAT
TTGACGGAACAACGAAAAATATTAGAAGCTTTCGAGAAGAAGAAACAATC
ACAAGATGTCGTCGTCCAACAAAATAATGTGGTGCCCAATCCTCTTAATC
CTCCAGCAAGCAAACAGCACCAACAGTCTGTCAAATCTCCTTTTGCTCCA
AGCCAACCGTTCGCCGCCCCAAGCCAACCAGCTCAGCAACCAACTCAGCA
ACCAACTCTAAACGGATCTGcttccacaaacaacaaaccGTCAGATGATT
TGTTGATGCTTGGTGGCTCCTCAAACGCGTTTTCAGTACAAAACACAATG
CCATCCTCTAACTTCGCCTCTGCATTCAACTCAACACCATCTTATGGTCA
ACCCCAACAGAACATGTTCGCTCAGCAACAACAATCCGTCGATTTCAACA
ACGCTTTTAACAACACTTCTACCTCTGCAACAGTAAACTCATCAAGCACA
CCAAACCTAATTGATGATCTGTTACAACCTGAACGACCAAGCAGCTCGTC
AGCGGCTATGACCACTATGGATAGTAACGTCAGAATGACTGGAGATTTGG
ATACCGGACTTCAACGCATGGCTCAATCTCTAGGTCAACCCCAACAGAAC
ATGTTCGCTCAGCAACAACAATCCGTCGATTTCAACAACGCTTTTAACAA
CACTTCTACCTCTGCAACAGTAAACTCATCAAGCACACCAAACCTAATTG
ATGATCTGTTACAACCTGAACGACCAAGCAGCTCGTCAGCGGCTATGACC
ACTATGGATAGTAACGTCAGAATGACTGGAGATTTGGATACCGGACTTCA
ACGCATGGCTCAATCTCTAGACGGTTTAAACATTAACCCCAACACAATGA
AAGCGAACACTTCTAAAGGTCATCAATGGAATCAACGTGGTGAAACGAAA
CTGACTGGTGGCAATAACTACCAAATACGAAATGTCACACCCTCCACCCT
TCCGCCCATGAACACGATGGGTGGTATGGGTGGTGCACCTATGGGTGGAA
TGCAACCGCAAGGCATGATGGGAATGAACAGCATGGGTATGATgggacaa
caacaacaattccAAATGCAACCACAACAGCAATTTTACGGCATGAACCA
AAGGACGGTTTAAACATTAACCCCAACACAATGAAAGCGAACACTTCTAA
AGGTCATCAATGGAATCAACGTGGTGAAACGAAACTGACTGGTGGCAATA
ACTACCAAATACGAAATGTCACACCCTCCACCCTTCCGCCCATGAACACG
ATGGGTGGTATGGGTGGTGCACCTATGGGTGGAATGCAACCGCAAGGCAT
GATGGGAATGAACAGCATGGGTATGATgggacaacaacaacaattccAAA
TGCAACCACAACAGCAATTTTACGGCATGAACCAAAGGCCGGCATTCGGT
GGAGGTATGATGCAACCACAACAAGGGGGCATGTACAACGCCAACATGGG
TATGTCTGCCAGCGCAACAGGTGGTTTCAACGGCATGCAGATGCGACCGC
AACAACAACCTATGATGATGGGAGGAGGAATGAACTCGAACAACCCGATG
ATGATGAACAACGATCCTTTCAAATAACCGGCATTCGGTGGAGGTATGAT
GCAACCACAACAAGGGGGCATGTACAACGCCAACATGGGTATGTCTGCCA
GCGCAACAGGTGGTTTCAACGGCATGCAGATGCGACCGCAACAACAACCT
ATGATGATGGGAGGAGGAATGAACTCGAACAACCCGATGATGATGAACAA
CGATCCTTTCAAATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000020_pilon | genome | sc0000020_pilon:629127..634350 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1870-2058:5036 |
| Aaloc | 1588-1869:4548 |
| Aaloc | 1351-1584:3996 |
| Aaloc | 883-1347:3246 |
| Aaloc | 601-879:2745 |
| Aaloc | 541-600:2307 |
| Aaloc | 484-540:2072 |
| Aaloc | 445-483:1523 |
| Aaloc | 343-441:1268 |
| Aaloc | 265-339:996 |
| Aaloc | 124-264:617 |
| Aaloc | 1-120:1 |
|
