XLOC_044354 (mRNA) -

Overview
NameXLOC_044354
Unique NameXLOC_044354
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000020_pilon:645390..651780+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_044354 ID=XLOC_044354|Name=XLOC_044354|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6391bp|location=Sequence derived from alignment at sc0000020_pilon:645390..651780+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTGTTGTGGGAGAATATGGGATCGAGTGAAATCAATATGTGGGAGAAG
TATGTCCTCTACACAATTGGTTGAACGAACACCTTTGCCCAAAACCATCA
TCTCCATTCTATTCGCTATGTTGGTGAGCTATGTATTTTTATTGCGtttt
tttGCGGTAAAGGCTACCGCACTTACGGTTAACAGCCCAAAAGTTTGCTG
AATAATAACACACGGTAGCCTAAAGGCAGGTATCCGTAATCCTCGTAGCT
GTCCCTTCCGCATATCTTTCAAAAGATTATCCCTAAATGCGAAAATGTGC
CTTCCATATCAAGTAGGAGACAGGAGAAAAGTTTTAATCCATAACACTTC
TTTACAAACACATGATACTCACCGATAGAATGATTTCACTAACAACACGC
CATTCTTTTACAGCTCTTTAACGCGATGGCAATGACGATGGTCTTTGCAT
ACCTACCTAAACTCGTCAAGGTGAGTCACACCTACTTATTTCCAATAATG
TCGTTTAGATTAAGATTATGGAAGTATTTCGGTAAATTTAATCATCATCC
AATGGAGTTCAATCTTAATGTGtttttttAACTTGATACATCCGATTGTC
GCTAATTCAATCTTGAATTGATATCTaaattgttcgaattacagagaaat
tcTTTTATGAAGGATCCGAGCGGCTCAGCCAACGATAACTGAGAATCGGC
TCAAAGGAGTAGTGAGAATTTACTATAAAAACTCATGGACCATAGAATGC
CTTCTGGAGTTCGTTATTCCTTAACTTCATTTCATATTTCTacgtgtttt
tcttttttcagtcaTTTGGTACTTCAGAAGTAAATACAGGTATGAAAAGT
TCATTTGTACTTCGTTTTCTGTCTTTTGCATGCCTTTTGCATGGAATCTG
TGCATTTCTTTATCAATTTATTCAACTATTCCCGGGAAATAAGCCATACA
TTTGACTACCAACActgattttaaacttttaaacgtTAGTGTTATCATAA
TAATTTAATAAGGGCGCTTTAAGCGAGAAAGTATCATTTCTCCTGACCCT
TGCAGCCTTTACAGTGAACGTTCGAAAACCTAAAAATTTCCTCTTTGGAC
AGTGCCCACGTGACTTATCTCGAATGTCCCACGGACTTCTGGGTGTAAAA
ATTGGAGGCagtcagagaaaaaaaatttatctaaAAGCGGAGGATTCATC
GTGGGAAAGGTTTAAAAAACTAGATAGAATTCACAAGATAGTTATATCAA
TCACTGGACTTGAACACTAACTAACTTTTTCGTTCCTTTTATTTCACAGG
TTACTATGCCGGCTTAATTGCTTCTTCATTATTCGTTGGAAGACTCATAT
TCAGTTTAGTATGGGGTTACATTGTGGACCTTCGAGGGAAGAAATTCACC
GCCATCTTGTCTGCATTCTGTTTAATGGTCACCACCCTGGCGTTCGGATT
CAGTACAAATTTCTGGTGGGCGTTCATCACTCGCTCTTTACAAGGACTTT
CTATGGGTTTGATTGTGGCATCGAAAGCCTTGTTGAGTACCATTTGCGAT
GATAGTAATATTGCACTGGGAATGTCTATCattatttcatcattttctgC
AGGCCTCATCATTGGCCCTAGTCTAGCAGGTAAGAACCAATCAAATACCT
ACAATTTTAGTGACATACCATGTAAATATCTAGCCTGGATTGTTAAAAGA
TAAGCAAAACTGAGCCTCATTATTTTGTCGAAATGATGACATGCGTTTTA
TAccaaatttcaaatatatatatttttcgtaAATAAAGctaaatttcgcg
gaatttattttttttcacttactaGGATTTTTGGTATTTCCACATCAACA
ATACCCATCCGTTTTCCCAGAAGGTAAGATTCTTCTTCATAAAAAGCttt
cataaatttgaaaattctttttgtttctgATATAAATTTGTTAGCATACA
Tatatccgggggggggcactcaaggtaaatgacctaccagacgttcggtc
cttaagggtaggtttttcatagttcagctagtgcactgtaagggtaggaa
attacaaaactgcactgaactgcactgtaagggtagaaaatTGTGAGGAA
AGGctaattttttggtaaaattggcacaaaattggtcaattttggaggaa
aaattccacattttcttggaaaattgcaaaaactttgaaaaagtgcactg
caagggtctgattttagaagccaaattttgtgccgaacgtatggtcgtat
tcagatcgagtgcccccccccgggacatgtatgaatttctgtccaactat
cttctttcaggagatttggaaATTCCTTGGGGAATTCTGTGAATGACTCC
TCTGGAGTCAATTTTGTACTGCATTGAGTACAACTGTACTTATTAAAAAT
ATCTATGGCTTCAGAGGTTGATGTTTATGTATAGTCAttattagactaga
gtctacttctggctgaactttgctttttgataatttcttatgacgctgag
tccagtgaagtagactaggagcgtttggcgaggtcgccattttgatagaa
aatgttaaaaatccaaataacaataaaactacttgtagttgaaagatata
atcacaaatgagaaacaaacatcaataacagatttgcaatcccttattct
caaataaaaacattgctccatactgtttttaccttccaaaaacaactaaa
atctggcggactgttttacagtttGCCTAAGCAAAAgaatattaccatat
actaccgggccacttaatcgcgccatccagtctatcaaaaagctttaagt
gaaCCCCGGGctaaaagtcattataaaaaacccggtctggcaatgtattg
ttttaaagctttttgttcaattttcttttgttacaaacaaaagacaagtt
acgatttacatactttttgatcacgttaccaaaaccTCCTCTTAGGATTG
GTCTAATTTCTAATCACATggtcaaaaagtttgcaaaataaatcgatttt
ggtacgtaagctctatcttttaacaataaaaagagacaaaagcctatcca
gaccagtgtttttataatgactatagTTTATTTGGGCAAAAGCAATCTTA
TACCCTTTTGTATGATCCATTGAAATTTTTGactatttcatttaattttt
ttttgcagataACATCTTTTCGAAGTATGGAGTACTTTTCCCCaacttca
tcattttcatcgGATTGTTGGTGACGGTGACCATTGCCACGAAGTTGATA
CCTTCTGATAAAAAGTAAGTTCAAATCTCTGCCTCTCTTTATAGGGTaca
attaattttgatttcccttGTTTTTCTAGGGaaaactttgaaagattttg
gatTATTAAATATGGCGTGCTGTCATGTTATATTTGTGATTACTTAAGTT
GATTATGAGCCTCAACTCTCTATTGTAATTTACCTCCTTGAAATTTTATG
AACCAAATTTTCATTATCTACTTCATTTAGAAACAAGAATGAAGAGAAGA
ACTACTTGCTCGATTTGCgaaatgaaaataacaacaaaaagaagaacTAC
GTCACTCTCAAAGAAGATGAAGATCACCAAACGTTCAAACGAAAAAGTCC
TGACACATATCTGGAAGTTTCTATCAAACATCATGATGAATATAAACATA
AGAATCCTAATATGTTTTATGTTCAAATTGTTGAACCTATTCAAAGTATA
ACACCTTCTCGGCACAACAACACGGAGAACTTAACCTGGAGACAACGATG
GGAAAACTCAAATGTGAAAGAGCTTTTAAGGTGAATACATATCAGCgctc
ttttcaatttttttcttctttttatgaAAAGCTCGAGCTCACTACTCGTG
TTTCAATGGGGTTTCAATATTCGAAGGAACTCTTTCCGTCTTTGGTAGAT
AAAAAGCATTCCTCGCTAGAACATAATTTATTCACGACCCTTTTTAAAAT
GGTGGATTTAGCTCTTGACTGGGAGAGTTAGCCATCCGTGTAACGTAACA
CAGTTAAAAACATACCGTCACAAGCGTGTTTAGCTCCGTATTTGTCAACT
GTATTTCCAACCTATTTGTTTGTTATACAGCAACAAATGGTGTGTGTTGA
CTTGTGTATTATACGGAACATATTCCCTGGTTGCCATTGGTTTCGATGAA
ATCGTTCCTCTATATCTCGCAACGTCCATTGAATATCGTAAGTATGCCAT
GTTTTCTCTCAAAAACCTTGTGGTATTGTACacaagcaactccaattttt
ggGTCGCCCTGAGGTTgtttagcattctagctcatttccAGAAAAGTTTG
CCCCTAATATtatataccatatttatgcttggGTCAAGGGCTATTGTTTg
cgttagattatctaaaatgcttttactttacgagatagtgaaaaaatatt
tagctAATTTTGAGCCctcgagccttagcaacctTGTTGCTCATAAAAAT
GTCTCTAAATTTCAATCGTAATTCTAGTAAACTCTTTCTCCACGTTTTAG
ACGGGATGGCATTTTCAACCAGTCAAATCGGAATGGCATTATTAATCGTT
TCAATATTTCTAATCATCATACAAGTCACTCTGCTCACTTTTGTAAGTTC
TCTAACTTGTTATTCGTTTTCAAATGTTGGATTATCTGTCTGTCCACTAG
CTTGGAAACCAAACAGAAGCGTTCTGCTTGCGTGAAATTAAGTATAGGAA
CAGTTTTTGAGAACAATTTTGTTCAAAACAAAATCGTTAAGAAATGAGAA
CAACTTCAGAATAATGCTGTGCCTGGAAGAATAGAATAAGAACATTATGA
GGGTCAAAGTGCcaaaagaaataagaaatgCCGAGTCTAAACAGAATTTA
CTTACAAGTTACTTTGCAGCCTCATTGTaatgatatatttttcttttttc
aaattttcagttagCTACAAAGTACGGATCTAGAAAGGTAATGAACTTAA
GTTACTTTCCTTCGCATACTTGAGCCTCGATCCTCGCATATAACCTTATA
AAATGTAGCCTGAATCAATATTGATCCATCCTTTCTCATGGTTCAAATGC
AATTCCATTCAGCATTTGATACTGTTTAGATTCATCGTTGATATACTGTT
CTTTTTCAGATGTTCATTGTCAGTATTTTAATATTGGCTTTTGTTCTACC
CTTCCTACCAACTATCAGCAACATCAAGAAtaggtttgttttgtttttat
accgCTCCCAATGCGCTGACTATAATCAAGTTTTATCGTTACAATATTCA
TATACACTGcactgtgatactcacggtacccTTAGGTGCATTCTCATACA
CCCATGCCACAGACTTACTCTTAAGTTTTACATCTCCATTGTCTAAACTC
CATCATTTTCATCCGTATTAAAAGTGAAATAGAAAACACCACTCAATCCA
GATTGCTCCCTACAAAACTTAAAAGTACCAAAAAACTGTCGATTAGGATT
TTTTCATCATAATTGAAAGTATGGAAAACTCTTCATTGTTTATTCACTTC
ACCACAGGACAACATTATGGGTTGTGTTATCCATCTATCTTTTGATATGT
CGTGTAGTGATAGCTGGACCCTTCCTCGCACTCAACATCTTGATCAACAA
TTCAGTAGAGGAACATCTTCTTGGCACTGCTAACGGAATGGCGATGAGCT
TGTCTTCTGCTGGAAGGTATATAGCTTTGTTGATTACCCCGGCTCTCCAA
GACTGAATTGAATTTATTCCAttgggaatttttttcatgaattacaattt
ttaaccccctggacacgggttatacccctggacaaacaccaaatcaaccc
cgtggacacaaaaaattacccctggatattggaatttaccccctggacat
tgcaattttttggtattttttcaatacccctggacaattcatcctccacc
ccccattaacggattttttctggaggAGCCCATTTCCACTGTAAGCTATC
GAGTACATAAACTGTTTTACGTTCTGGTGATTCTTGCTTGAGATGATTAA
AAGTCGGCAATGTAACGCTAACATGCAATTCAGTTTATAACCCAATCTGC
tttttttCCACAGAATGATAGCTCCAACCATGGTAGGCAGTTTATTCTCA
TGGTCCCTCACCAACATTAAAGGAGTAAAAGACAACATCAATCCACTTGG
ATTCCCATTAAACCAATATTTCCCATTTCTCATTCTATCATTTCTGGCTA
TCTTAAACGCTATAATAGCTTCAAGGATACCTGTATCGCTAGACAAAAGT
ATGAGAAAACCAAAGGATGAGAAAGAGGATCTGGATCAACCAGGGAATGT
CACCAATATCACTGTTGGTTATTTTACACCGAGTCATGATAACGATGAGG
CTATAGGTTATTTCACGCCAAGTTATGAAGAAAAACTCTag

Coding sequence (CDS) from alignment at sc0000020_pilon:645390..651780+

>XLOC_044354 ID=XLOC_044354|Name=XLOC_044354|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3558bp|location=Sequence derived from alignment at sc0000020_pilon:645390..651780+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTGTTGTGGGAGAATATGGGATCGAGTGAAATCAATATGTGGGAGAAG
TATGTCCTCTACACAATTGGTTGAACGAACACCTTTGCCCAAAACCATCA
TCTCCATTCTATTCGCTATGTTGATGTGTTGTGGGAGAATATGGGATCGA
GTGAAATCAATATGTGGGAGAAGTATGTCCTCTACACAATTGGTTGAACG
AACACCTTTGCCCAAAACCATCATCTCCATTCTATTCGCTATGTTGCTCT
TTAACGCGATGGCAATGACGATGGTCTTTGCATACCTACCTAAACTCGTC
AAGCTCTTTAACGCGATGGCAATGACGATGGTCTTTGCATACCTACCTAA
ACTCGTCAAGtcaTTTGGTACTTCAGAAGTAAATACAGtcaTTTGGTACT
TCAGAAGTAAATACAGGTTACTATGCCGGCTTAATTGCTTCTTCATTATT
CGTTGGAAGACTCATATTCAGTTTAGTATGGGGTTACATTGTGGACCTTC
GAGGGAAGAAATTCACCGCCATCTTGTCTGCATTCTGTTTAATGGTCACC
ACCCTGGCGTTCGGATTCAGTACAAATTTCTGGTGGGCGTTCATCACTCG
CTCTTTACAAGGACTTTCTATGGGTTTGATTGTGGCATCGAAAGCCTTGT
TGAGTACCATTTGCGATGATAGTAATATTGCACTGGGAATGTCTATCatt
atttcatcattttctgCAGGCCTCATCATTGGCCCTAGTCTAGCAGGTTA
CTATGCCGGCTTAATTGCTTCTTCATTATTCGTTGGAAGACTCATATTCA
GTTTAGTATGGGGTTACATTGTGGACCTTCGAGGGAAGAAATTCACCGCC
ATCTTGTCTGCATTCTGTTTAATGGTCACCACCCTGGCGTTCGGATTCAG
TACAAATTTCTGGTGGGCGTTCATCACTCGCTCTTTACAAGGACTTTCTA
TGGGTTTGATTGTGGCATCGAAAGCCTTGTTGAGTACCATTTGCGATGAT
AGTAATATTGCACTGGGAATGTCTATCattatttcatcattttctgCAGG
CCTCATCATTGGCCCTAGTCTAGCAGGATTTTTGGTATTTCCACATCAAC
AATACCCATCCGTTTTCCCAGAAGGATTTTTGGTATTTCCACATCAACAA
TACCCATCCGTTTTCCCAGAAGataACATCTTTTCGAAGTATGGAGTACT
TTTCCCCaacttcatcattttcatcgGATTGTTGGTGACGGTGACCATTG
CCACGAAGTTGATACCTTCTGATAAAAAataACATCTTTTCGAAGTATGG
AGTACTTTTCCCCaacttcatcattttcatcgGATTGTTGGTGACGGTGA
CCATTGCCACGAAGTTGATACCTTCTGATAAAAAAAACAAGAATGAAGAG
AAGAACTACTTGCTCGATTTGCgaaatgaaaataacaacaaaaagaagaa
cTACGTCACTCTCAAAGAAGATGAAGATCACCAAACGTTCAAACGAAAAA
GTCCTGACACATATCTGGAAGTTTCTATCAAACATCATGATGAATATAAA
CATAAGAATCCTAATATGTTTTATGTTCAAATTGTTGAACCTATTCAAAG
TATAACACCTTCTCGGCACAACAACACGGAGAACTTAACCTGGAGACAAC
GATGGGAAAACTCAAATGTGAAAGAGCTTTTAAGAAACAAGAATGAAGAG
AAGAACTACTTGCTCGATTTGCgaaatgaaaataacaacaaaaagaagaa
cTACGTCACTCTCAAAGAAGATGAAGATCACCAAACGTTCAAACGAAAAA
GTCCTGACACATATCTGGAAGTTTCTATCAAACATCATGATGAATATAAA
CATAAGAATCCTAATATGTTTTATGTTCAAATTGTTGAACCTATTCAAAG
TATAACACCTTCTCGGCACAACAACACGGAGAACTTAACCTGGAGACAAC
GATGGGAAAACTCAAATGTGAAAGAGCTTTTAAGCAACAAATGGTGTGTG
TTGACTTGTGTATTATACGGAACATATTCCCTGGTTGCCATTGGTTTCGA
TGAAATCGTTCCTCTATATCTCGCAACGTCCATTGAATATCCAACAAATG
GTGTGTGTTGACTTGTGTATTATACGGAACATATTCCCTGGTTGCCATTG
GTTTCGATGAAATCGTTCCTCTATATCTCGCAACGTCCATTGAATATCAC
GGGATGGCATTTTCAACCAGTCAAATCGGAATGGCATTATTAATCGTTTC
AATATTTCTAATCATCATACAAGTCACTCTGCTCACTTTTACGGGATGGC
ATTTTCAACCAGTCAAATCGGAATGGCATTATTAATCGTTTCAATATTTC
TAATCATCATACAAGTCACTCTGCTCACTTTTttagCTACAAAGTACGGA
TCTAGAAAGttagCTACAAAGTACGGATCTAGAAAGATGTTCATTGTCAG
TATTTTAATATTGGCTTTTGTTCTACCCTTCCTACCAACTATCAGCAACA
TCAAGAAtagATGTTCATTGTCAGTATTTTAATATTGGCTTTTGTTCTAC
CCTTCCTACCAACTATCAGCAACATCAAGAAtagGACAACATTATGGGTT
GTGTTATCCATCTATCTTTTGATATGTCGTGTAGTGATAGCTGGACCCTT
CCTCGCACTCAACATCTTGATCAACAATTCAGTAGAGGAACATCTTCTTG
GCACTGCTAACGGAATGGCGATGAGCTTGTCTTCTGCTGGAAGGACAACA
TTATGGGTTGTGTTATCCATCTATCTTTTGATATGTCGTGTAGTGATAGC
TGGACCCTTCCTCGCACTCAACATCTTGATCAACAATTCAGTAGAGGAAC
ATCTTCTTGGCACTGCTAACGGAATGGCGATGAGCTTGTCTTCTGCTGGA
AGAATGATAGCTCCAACCATGGTAGGCAGTTTATTCTCATGGTCCCTCAC
CAACATTAAAGGAGTAAAAGACAACATCAATCCACTTGGATTCCCATTAA
ACCAATATTTCCCATTTCTCATTCTATCATTTCTGGCTATCTTAAACGCT
ATAATAGCTTCAAGGATACCTGTATCGCTAGACAAAAGTATGAGAAAACC
AAAGGATGAGAAAGAGGATCTGGATCAACCAGGGAATGTCACCAATATCA
CTGTTGGTTATTTTACACCGAGTCATGATAACGATGAGGCTATAGGTTAT
TTCACGCCAAGTTATGAAGAAAAACTCTagAATGATAGCTCCAACCATGG
TAGGCAGTTTATTCTCATGGTCCCTCACCAACATTAAAGGAGTAAAAGAC
AACATCAATCCACTTGGATTCCCATTAAACCAATATTTCCCATTTCTCAT
TCTATCATTTCTGGCTATCTTAAACGCTATAATAGCTTCAAGGATACCTG
TATCGCTAGACAAAAGTATGAGAAAACCAAAGGATGAGAAAGAGGATCTG
GATCAACCAGGGAATGTCACCAATATCACTGTTGGTTATTTTACACCGAG
TCATGATAACGATGAGGCTATAGGTTATTTCACGCCAAGTTATGAAGAAA
AACTCTag
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_044354XLOC_044354-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000020_pilongenomesc0000020_pilon:645390..651780 +
Properties
Property NameValue
Aaloc1453-1779:6065
Aaloc1294-1449:5509
Aaloc1219-1290:5110
Aaloc1192-1218:4911
Aaloc1102-1191:4503
Aaloc994-1098:4082
Aaloc694-990:3482
Aaloc589-690:3161
Aaloc541-585:1828
Aaloc211-537:1302
Aaloc181-207:812
Aaloc124-180:414
Aaloc1-123:1