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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000186_pilon:37977..43464+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_044219 ID=XLOC_044219|Name=XLOC_044219|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5488bp|location=Sequence derived from alignment at sc0000186_pilon:37977..43464+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACGAAAAGTAATCCGTGATGTTAAGGGAAGCAGTACTGCAtcaaa
gaaatctaaaaaaggATTCGAAGAAGGAGAGGCTGACATCAAAGTACGAG
AGCTACGAGATTTTAATAACAGTTTAATGAAGAAATTGGGTCTCATTTGT
CGAGATTATCCAGACATTGCCCCCGTTTTAACAATGTATTGTCAACAATC
AGGACTTCCGGTTCCTCCATCACCCGGACCAGGTAGTTCCCGTGGCTCAT
CGACTACTGGAAGTGTTCGATCGAATTTGAGTTCAGCTAGGTATATTTGT
TTTTAGGTTTATATACCTCTTGTCTGTATGTATAAGTTTTGACCGATTTT
GGATTTACTCAATATTTTCGGTATTTTCTATTTAAGTACACTCTCTTAAT
AACGGATGCCTTtgctaccagtggataccccttaaaacctacaacaaTAA
AAGGTACCCCCTATATTCTGATAGAGTAAAAAGTAagggctgaaactttt
tctggtgaGTCTAGGCTACCTATGATTTTCTTCCCTGGGTATGGTTTTTG
CAAAAGCtggtaataaaattttattgctTCGTGAAAAAGTgcaattttag
ctatttaccccttaaaacctacaaaatggttttcttggacaacttttcat
aaaatagtccttttggtctcaaattttgaacagtgattcacagcaaagtt
actaatgctacaattagatcattggtACCTAAATGTTTTCTaaactgtac
gttaaaatcaaattatacctaaaacctacactattacaccttaaaatCTA
CAAACATTGACCCCTTGCTCACAACTTACTGAAACTGTGAAATTGTAATT
CAAGTACTGAACCGTGATTCAATCGATCAACTACTTGCTAGATATCCATT
TCCAaaacaatttttgtatttttcaggatttcccataatgcaattgcgcc
tgtttttttgtcaaaaaacggctttgaagggtcaaaacttttattcactT
AATTTTTGACGTATGTCACTAATGTTTTTCctaatctccatcaaatttgt
gacattttgtaTGCAATATGACCGTTGTtttgagaaagttgattttcaga
ttttattggccACTACTATAAATGAagctttaaaatagaactttgaaGGC
CTTACGATTTCTTTGGGGTGTAACCacggaagaaaaaaaagattttttcg
tacctaccataagtaAAAGTACCTAAAAAATATAGATTTTATGACCTTAC
ATTACATTCATTTGTGTAATATCTAGATCCAAAAAactagattttttgaa
gggatttttgataaaattttcaataacgtcgaattttacgacactttgcg
ataattaaaatttttgaaataaggtattttatgaaaataccTATATTAga
gattgtaaaaaagtgaattatacaatattaaattaagtttggtggttAAG
AGAGCCCAAACTGCGATAACGTGCTAAGATTAAAACTACCGAATTATATA
TATTCCTTGTTTATCGATTTATCTGTAATAATCGTTATTGATTATTTATA
CTCTACATCGAACAATCTCAAGATTTCCCgataatttaattttattagCA
TGCAAGAAATTATATTCGCACGCGTATTATCCTGTATCGTTTgaaatgtt
attttcatttttgtttttttcagatcATCAGTATCGTCCGTTCGAAGTGA
TACAAGCAGTGCACGACAAAGTCGACAAGCCTTGGGTACTGTGTCTGTTG
ACCTGTCTTTCAATGCTTTCGCATCACACAGTCCGCTAGGTAGGTATCAC
TGAcatttatatatccctggaaccaagctatatccgccatctttgatcga
cgttttttttaaagttggtacccgcaaagaagccattgtagtgtttgaaa
ctttacctaacgacaaacggcgctacatcattagtgtacaagcgaaacta
gatctagcgctctctccgcgggtaccCATCtcaaaaaaactctgatcata
aaattttacttggccggcattgagggatatatataaaggtcagtgggtat
GTATCATTCTGCtactcattgagtttaaagccatAAGGGCTATAAAAGAA
TCTCCAACCTTTCTCATATAAGAAAACGTGAAAACTTAGGATTTGTGTTG
TATTTTGGACGACCAAAGTCGAACCCAGTCACTTACGCACGCTGCGGTCT
TACcgtttggcttcaatcctttttgcttggaaaaaagattacgtcatgaa
aatgtgacgcgcgctcgaaaaaaaagttgaacacatttcaactttttcca
acCATTACGTcggatcgcgccaatggaattgcttcatttttcttttgacc
aatagcgtggaagctttgctagATAAATTGTGATCACGGTGTGctcaagt
ggagaccggcctttagtttgctcttttatgattttgatagtGCTCGCGTC
TCTCAGTAAAgttaaaaaagtgatgcaagtggctctgggtacgagattgt
tGGACGATGCATTAGATCTATCACTATTCTTGCCAAAACTTTTGAGCTAA
CTTTCCAAcactgcttggtttttatttcttttttctttatcagtctcttc
tgccacctttcccgcccgtttttcttcGTCCGCCCTTCTCCAGTCCTTGC
TAGGCaatgggtttttccagaaaaaaaccgtataccccctgttgaggagg
tccatttccgttccaagtgGGTgcggtttgatatgtggcggaattccata
gggagatgcAAAAATCTGCctaaaataactggaattccgtgggggtagct
ttttaaatcctactaaaattaagaattccagaggggttcaaacctgaaat
tgcttggaattccagggggttgcaGCATTTCCGaccacagagggatggac
ctcctcaacaggggtatacggtttttttctggaaaagcccaataggACAA
ATAACACAAACCAAAtcatacgtttttttatataaaattccACAAAACTG
CATGGATAacaaaaattttggtttctaattCAATTATCAGCTGCGGCTAT
TGTGACAGTTTAATGATGtctctaaaaaatgattaatgATGCAATTTTCA
AGTAATTTTACTACTGGTGAAAGTCTTTGTCAGAATACCGAGTAATTATT
Gatgaaaaaaggggaaaatatttaaagggataatcagatggtttgaaata
tttGGATTACAGAAACCTTATGTGATCCTTAGTAAAACCTTagtaacaat
tttccaaaatcgagatatcaaaatttataatttttgaaaataatgggttt
ttacacggttcttacgttgaaattctattgttttcatcctagaagccaaa
aacttgtaacttaaatatctcgactttggaaaatagttaggcaaaaatat
tttgagattttgctcaggacaatagaaggatcCAACATGtcaaatattac
aaaccatctgattatccctttaaagttAAACCacatcttttcttttctta
aatTGATGATCAGATATGCGGGACATATTTTTGCCTGCAGAAATCACCTG
TAGTCCTAAGTAAACATCCGaatatttttgcctaattaTTAATTTGGTCC
AAAACACATTTCTTTCGTTATATTTCGATTGTTTTCCtactaaaactcaa
aaaatatagCTTGAATATCCCGAACCGGCaaactacaatcaaggtcataa
tatttgataaaaaagggaaatccaccgagaagtttttgaaccacaatcga
tttgtaagtgctctaaagtaggttggaagggtagagttttaactctgagt
tttaacatgagacttaagactcaaagaaccaaaagttcaaaaatattcca
ataagactcagaatatagcctggaagtctgccaacccctcccagattgaa
atattcgattaaattaaaaagatagccaaaaatcgactttctcgccagaa
ctttaaatcttgaaaaacgttaaaataaccaaaattctcaatatagtATG
ACCTTAATTGtagttaggcaaaaatattttgaggtattGGTCAGGACAAT
GGAAGGAATCCACATGACaaatatttcaaaccatctgattatctgTTTAA
AGAATAAATATATTCTTATCCTCAAATTGCCTGTACCAGGCAGCaaaaaa
aTCTGTGAATTCCTCGGTGAATTCATACCCttaaagtgcattttctcaaa
ttttcaactgTTTTAAGCCGTGGTTACACTacattaatatctttaaaaat
tttgaaattttttaatcaaaaatacattaaagaaattaactattttcttt
aaagtctttttgaaatttttgtatgttgtatcaaattttcaatcgttttt
tctcaactcattttctcaCTCAACAAACGATATAAGTGAAAGGAGGAAGG
CTGCAGCACGTATTGTGCTAATTCTTTTGAAACGGAAATTTCAGaggaaa
tattcgaaaaagaaaagtcgAGCTTAAAAGGTCTTGCTGGGTACGCAGTT
GGTTAAACTTAAAGTTCAGGAACGAAAAAAGTGCCTACAACAACATATTT
GCTGAACTTCTTCGTCTACGTGACCAAGAATAATAGAAGAAGTCTATATC
TCAGGATGAACACAGAAACTCGTGGCTGATATCCATCCATCATGCAAAAT
CTTTCTCTTATCCTATCTTTCACCCCTATCTCATATTAGCCATATTACAg
tttaaaaattccaaacgCTGGAAAATCTATTCATCGAAAAAATGTACAGA
ACTATCATGTCGGTGCCTTTGATCTCGagagaagtgaagaaaaaaacttt
aaactctttaccaaaaaaatggtaaagaatcgcaagaaatgatttatttt
tcaagaatttataggtctttattttctttaaaagaggaCTGTTACactca
gaaattttgaaataaattaatgtaatgtaaccacgcctttagggaaaaaa
gattttttgtcaaaaattagcAATTGTTCttggatttgctgaaatttcca
cccttacagagTGCACTTATCAAAAAGTCCATCCTTACAGTGGATTTCTG
CTATTTTGAAACCTCAACCACCGCACCTACTCGTCGGTCAATTtacctga
ctgcccccccctcTTACCCAATGGCcacaaacgtcttttggacgtctaat
gtacgtttctaggacgtccaaaggCCTTAAAGCCGTCCATTGATTTGAAT
GTCCATTGGTTATGAAGGTGTGACTTTtgaagggagaaaaaacttGCTTT
TCTATGCATCTGATGATTatgaaatttcatttcaatcaatttttcaatcT
CAGGAACACCGCCACGATCAACCGCCAGTTCTCGGGCGTCATCTGGCAAA
TCAACACCCTCTCGTACTCCTTCACGAAGCACTTCCGCCTCATCGAATCG
TACCTCCCCAACCAAGAAAACGCCCACGTCTAAATCCAATTCACGCCCTC
CAACAGGGCAATCATCTGCTTCATCAAGCAAAAGATAG Coding sequence (CDS) from alignment at sc0000186_pilon:37977..43464+ >XLOC_044219 ID=XLOC_044219|Name=XLOC_044219|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1182bp|location=Sequence derived from alignment at sc0000186_pilon:37977..43464+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGACACGAAAAGTAATCCGTGATGTTAAGGGAAGCAGTACTGCAtcaaa
gaaatctaaaaaaggATTCGAAGAAGGAGAGGCTGACATCAAAGTACGAG
AGCTACGAGATTTTAATAACAGTTTAATGAAGAAATTGGGTCTCATTTGT
CGAGATTATCCAGACATTGCCCCCGTTTTAACAATGTATTGTCAACAATC
AGGACTTCCGGTTCCTCCATCACCCGGACCAGGTAGTTCCCGTGGCTCAT
CGACTACTGGAAGTGTTCGATCGAATTTGAGTTCAGCTAGATGACACGAA
AAGTAATCCGTGATGTTAAGGGAAGCAGTACTGCAtcaaagaaatctaaa
aaaggATTCGAAGAAGGAGAGGCTGACATCAAAGTACGAGAGCTACGAGA
TTTTAATAACAGTTTAATGAAGAAATTGGGTCTCATTTGTCGAGATTATC
CAGACATTGCCCCCGTTTTAACAATGTATTGTCAACAATCAGGACTTCCG
GTTCCTCCATCACCCGGACCAGGTAGTTCCCGTGGCTCATCGACTACTGG
AAGTGTTCGATCGAATTTGAGTTCAGCTAGatcATCAGTATCGTCCGTTC
GAAGTGATACAAGCAGTGCACGACAAAGTCGACAAGCCTTGGGTACTGTG
TCTGTTGACCTGTCTTTCAATGCTTTCGCATCACACAGTCCGCTAGatcA
TCAGTATCGTCCGTTCGAAGTGATACAAGCAGTGCACGACAAAGTCGACA
AGCCTTGGGTACTGTGTCTGTTGACCTGTCTTTCAATGCTTTCGCATCAC
ACAGTCCGCTAGGAACACCGCCACGATCAACCGCCAGTTCTCGGGCGTCA
TCTGGCAAATCAACACCCTCTCGTACTCCTTCACGAAGCACTTCCGCCTC
ATCGAATCGTACCTCCCCAACCAAGAAAACGCCCACGTCTAAATCCAATT
CACGCCCTCCAACAGGGCAATCATCTGCTTCATCAAGCAAAAGATAGGAA
CACCGCCACGATCAACCGCCAGTTCTCGGGCGTCATCTGGCAAATCAACA
CCCTCTCGTACTCCTTCACGAAGCACTTCCGCCTCATCGAATCGTACCTC
CCCAACCAAGAAAACGCCCACGTCTAAATCCAATTCACGCCCTCCAACAG
GGCAATCATCTGCTTCATCAAGCAAAAGATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000186_pilon | genome | sc0000186_pilon:37977..43464 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 409-591:5306 |
| Aaloc | 292-405:1675 |
| Aaloc | 1-288:1 |
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