XLOC_044062 (mRNA) -

Overview


Name	XLOC_044062
Unique Name	XLOC_044062
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000089_pilon:749149..753513-
coding sequence from alignment at sc0000089_pilon:749149..753513-

mRNA from alignment at sc0000089_pilon:749149..753513-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_044062 ID=XLOC_044062|Name=XLOC_044062|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4365bp|location=Sequence derived from alignment at sc0000089_pilon:749149..753513- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGACTTCCCGTGCAGTCAACCAAACTATGATAGCACTGTAAGGTT
GAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAGAAACTCAACCAAA
CAACTAACTACAATGAAAAAGAAAATGCTTTGGAAGCGATCAAATCCAGT
TTATCTGAACTGCTCATTATGGGTGAAGATGTAACCATTGGTGACTTGAG
AGTGACCAAGATTGGGAAGTTAATGACCAAACTTGAATCTTCATCTCACC
TCCCACAAGACCTTGTGACGCAAGCCACGACAATCAACAATGGGTGGAAA
GAAAAATTACATGTTTATCGTCAACAACTCAAAATAACACTCTCAGAGAA
AAAGGTTTACTTTACTTTAATTCATTTTTTATATCAAGTCGAAACTTTTC
ATAAAATCAGGGAATTTTTCCCTCTGACAGAAGCTGGTCTTCTAGCCCTT
CTAGAGAAATTTTCCCTCTCAAAAAAGAATTCCCAAGAAAATTGAGATTC
CATATTATTTTCTCTATTTTATGAAGAAAAGCTTTTGTGCTCAATTTATT
TTGGTGGCGCTGTTACAGGTGGCTCATCTCCTAGAGAGTTATTTCCATAG
TGCAAGTTTTCCAAAAATATGCTTATGTTATGCTTAGGAAATCTGCAAAT
CTGAGCCTTCATATGCTTATAAGCGTTATGCTTATAAAAAAAAACATGTA
TCGGGAGAAAGATTTTATGACTTAATTATGACTTTTTTTATACTTTTTTG
TTAATTGTAGAACAAACCTTCAGAGAAAGTGAACTGCAACGTCGATCACA
CAGCACATTCATCAAAAGCAGTATTGACTGATAATTCTCACCTTCCCAAA
GGTTTTTTTACTTTTTCTTCTGAAGTGTTTTTCATATTTTCATATTACTT
CATGTCTTACCAAGTTTCCATTTGCCTGGTTACTTTAGGCGTACAAACTT
TCGCGAGCAGAAACTTTCGCGAATTAGGTATATTTTGAGTAGAAAATTCA
AGTTTTCGGTGCCTAAGTCAGTCTTTTGATCGTTCAAATGCACTCAAACC
ACAATTGATGGACCTTTGCATAATTTCTACAGTAAATTTTATCCTTGTTT
TCATCAAAGAGAAAATTGATTAAATTTTCTATTCCGATTTTTTTTTTCGC
GAGTATAAACTCGGGGCGAATTGCCCTCTCAAGAATTTTCAAAGACATTT
ACTTTCGCGAAAAGGGCGAAAATTCGCGAAAATCGTGAAAGTTTCTGCTC
GCGAAAGTTTGTACGCCTAAAGTACTTCTTAAGGTGTACAGACCTATTTT
CTTCTTAGAAGCAATTTTAATTCGTTTTTCGTTTCTACAGTTTCATCCAC
TTCAACTACTTCTTCCACCGGAGATATTTTCAGTGCATCCACTGCCAACC
CTCCTCCTACTTCAGCCAGTTTCATGAAGAAAACTTTGGATAAACGAGCA
AACAGCTTCCCACCTTTCATGAAAAGAGAAGCTCTCTCATTTCTAACTAC
TCCACAAAAAACTGTTCTCGACAAAACGACCATCCAATCTTCACATGTTC
AGCAACCTAATAAAGCTGTAAAAATCATACAAAGTTATGCTAATGTTAAC
ACTCATTCGTTTGCAGTACCCTCATCTCACAGTCTCACAACTCTCTCACA
ACAAGAAATAACTTCGTCAAGCATTACTGGCTCCAAACAAACAACACAGC
TATCTTTTACCCGAAAACACGAAATAGCACAACCTGCTTTCCAAAGTATC
CAACAAGCATCTTTTACTAAGGAACATCAAACAGAACAACCTGTCACACT
TAGTCTTCAATCAAAACAACAAATCATTAATCAAGCTTCTCCTCGTGCAA
CCGGTAAACAAGATCAAAGAGGACAGTTAAAAACAGAGGAAAGCAAACGC
CACATCACAAACTTCACTGAAAAGTACGGCAAACTTTTAGATAGCAATAT
TTCTTCCATCATTTTAGTGCAACAGGAATGTATAAAGATGATGCAATCTA
CACATTCACTCAGAGAACAGTTATCCAACTTTGAAAAAGAAATGATCCTT
CGCCTAGATTCTCTCACACCATCATCCAACACTTTTAATGGAGATGGAGT
TGAAGTATCTAGCACCTCTGCTTCATTGGATTGTCATCAGCATACACTAT
CCAACAATCACCAGACTGCTTCATCCTCACTCCACGCAACATTAAATAAT
CAACTCACTGAGATTTCCGTCTCTATACCAAGCAATGAGTCTGCATCCTC
CGTTGCAAATATTTTACAAAAAGGCGCAACTAATAACGCTTCTACAGTTA
CCAATACAACGACAGCCTCTCTCATCAACCGTTCAAATATCCGGCATGCA
TCACCTCGAGAAAATATTCCTCCAACCTCAACATATCCTCAAACAAATAC
ATCTCAACCAATAATTGATAATATCTCTGTACTCGCGTCTCCTCTCCGCC
GACCACCAACAATCGATGCACCACGTGACCTTCCAACTGACCAATCATCT
TCAAGCAATTCGAACCATCATCATCATCATCATCATAATAAACCGCAGTC
GAATTTGGATTCAGTCCTCAGCACCATGACTTTCCATCCCAAACGTAAAA
GCTGTCCTTCTTCCACACCAAATCAAAAACCTTCCCAAGATGCACCGGTT
GCGAAGAAACCGAGAGAAACTTTAGGTCGTCATTTCTCAGAGGAAAACAC
TTCTTTCGCTAAAAACAGCAGATTGCATCCTTCCAATCAATCCACACCCT
TAACAAACCACCCTTTTAAAAGTTTTCCTGGGAGAGTGAATCCTTCGATC
ACCTGCATACCGAATTCCGAGGACGAGTTTTCGAACAATGAAGAATTAAC
GACAACCACGCAACATTCTATTCGAAGACCTCCACAAAATCATTATCAGC
CTCAAAATGGACACCACACACAAATCAATGACCTTCACGCAACAGAAGCA
CGCTCGAGCTCGAGTGCACTTCAACAACCAACGAAGAATACTTTTGATAA
CATTCCCATTAAACAAGAAGTTTGTTTTGAGATTTCGTCAGACCCTGTCG
CTCATTCAACACAGAACAACTCCAGCGAAACAGAATCTTTGACAAGCTCT
TCTGATGAACCCTCAAGAAGACGTAGAACCTCCACTGATGAAGAACCGAG
GAAGTCTTCGACCGATGATGAGCAACACTCCCGCATGAATGGGTATTATT
TTATTTTTTTTGCAAAATCTTCATCAAGTTTTTTTCGAGTAAGCTCTGTA
TGACTCCCTAGTTTTTATTTGACAAACGTCTTCTCTTTATTCAAATCACA
AACTCAAGAGAATCGTGTGTTGTTTTGTAACATGCAAACATTGGCTTTCT
CTACAGATCTGGTGAAGGAAGATCGAGAAGAACAAGTCATTCCTTTGAAG
TACCTTCGTCGTCTTTCATCAAGAAAGAATACTTGCAACACCACCAACAA
CAACACCACCAACAACAATACCACCAACAACAACACCAACAACACCACCA
ACAACACCACCAACAACAACACCAACAACACCACCAACAACACCACCAAC
AACAACAAGACCAACAACAACACCAACAACAACACCAACAACAACAACAC
CAAAACAGACATCAATCAGATCACGAGAAATCGCAAGAACAAACCAGTAT
TGTCTTTTTTCATATCTCATACGTTTATCCGAAATATCTATTCACCTTTC
TTATGTTTTAAACTAAAGTTTACTTGGAATTCAACAATGATGTTGAATAG
GCCAGTGGCCGAAATATTCATCAAAAAGATGATGTGACTATTCCTGACTT
CGCTAAGAATTCAATATAGGGGAACCAAGGGGCTTTCATAAGTTTGGGAT
TTTGAAAAGATCCAAAGAACACAATGTTTCTAGTTCTAGCCATCATTGAA
ATGAAAGAAATGACTCTGATGAAATATGGTCGAGGTTATGCAAGAGCAGT
CAGGGTCGTATACTTAAATAATCGTCTAACAAGGTTTTTTTTTAACTTTT
TCTTTTCAGAAGGAAAGATGAGATACGAGGAAGACGAAGAACTCTTCACT
TATTCGCAACAAATCGTCGAAATGGAAGAAGAAGAAGGCTTGGATGAGCA
CGAGAAGAATTATCTACAGAACGAGAAAGGAAAACTTCGCTCATCGTGGA
ACACGCGCTGTAAAAGGGCAGCTGGTCTTGATATTGCACCACGAAAGAAA
TCGCACGGGCGGCTAGTGGCGGCACACCCGCGACCGCTCGGTAAAGAGGT
GATACAGAAAATGTTGAATCGGAAGAAACAGGAAGAGAATATTAAAAAAT
TGTTCGAGCAGGATGCCATTTGGGAGGTTTTTGATCAAGAGGATCGCCAA
AATGATGATGGATGA

Coding sequence (CDS) from alignment at sc0000089_pilon:749149..753513-

>XLOC_044062 ID=XLOC_044062|Name=XLOC_044062|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5886bp|location=Sequence derived from alignment at sc0000089_pilon:749149..753513- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGACTTCCCGTGCAGTCAACCAAACTATGATAGCACTGTAAGGTT
GAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAGAAACTCAACCAAA
CAACTAACTACAATGAAAAAGAAAATGCTTTGGAAGCGATCAAATCCAGT
TTATCTGAACTGCTCATTATGGGTGAAGATGTAACCATTGGTGACTTGAG
AGTGACCAAGATTGGGAAGTTAATGACCAAACTTGAATCTTCATCTCACC
TCCCACAAGACCTTGTGACGCAAGCCACGACAATCAACAATGGGTGGAAA
GAAAAATTACATGTTTATCGTCAACAACTCAAAATAACACTCTCAGAGAA
AAAGATGGACGACTTCCCGTGCAGTCAACCAAACTATGATAGCACTGTAA
GGTTGAAGACATTGAAAAGACAGATCGAGGAAGCTTTGAAGAAACTCAAC
CAAACAACTAACTACAATGAAAAAGAAAATGCTTTGGAAGCGATCAAATC
CAGTTTATCTGAACTGCTCATTATGGGTGAAGATGTAACCATTGGTGACT
TGAGAGTGACCAAGATTGGGAAGTTAATGACCAAACTTGAATCTTCATCT
CACCTCCCACAAGACCTTGTGACGCAAGCCACGACAATCAACAATGGGTG
GAAAGAAAAATTACATGTTTATCGTCAACAACTCAAAATAACACTCTCAG
AGAAAAAGAACAAACCTTCAGAGAAAGTGAACTGCAACGTCGATCACACA
GCACATTCATCAAAAGCAGTATTGACTGATAATTCTCACCTTCCCAAAGA
ACAAACCTTCAGAGAAAGTGAACTGCAACGTCGATCACACAGCACATTCA
TCAAAAGCAGTATTGACTGATAATTCTCACCTTCCCAAAGTTTCATCCAC
TTCAACTACTTCTTCCACCGGAGATATTTTCAGTGCATCCACTGCCAACC
CTCCTCCTACTTCAGCCAGTTTCATGAAGAAAACTTTGGATAAACGAGCA
AACAGCTTCCCACCTTTCATGAAAAGAGAAGCTCTCTCATTTCTAACTAC
TCCACAAAAAACTGTTCTCGACAAAACGACCATCCAATCTTCACATGTTC
AGCAACCTAATAAAGCTGTAAAAATCATACAAAGTTATGCTAATGTTAAC
ACTCATTCGTTTGCAGTACCCTCATCTCACAGTCTCACAACTCTCTCACA
ACAAGAAATAACTTCGTCAAGCATTACTGGCTCCAAACAAACAACACAGC
TATCTTTTACCCGAAAACACGAAATAGCACAACCTGCTTTCCAAAGTATC
CAACAAGCATCTTTTACTAAGGAACATCAAACAGAACAACCTGTCACACT
TAGTCTTCAATCAAAACAACAAATCATTAATCAAGCTTCTCCTCGTGCAA
CCGGTAAACAAGATCAAAGAGGACAGTTAAAAACAGAGGAAAGCAAACGC
CACATCACAAACTTCACTGAAAAGTACGGCAAACTTTTAGATAGCAATAT
TTCTTCCATCATTTTAGTGCAACAGGAATGTATAAAGATGATGCAATCTA
CACATTCACTCAGAGAACAGTTATCCAACTTTGAAAAAGAAATGATCCTT
CGCCTAGATTCTCTCACACCATCATCCAACACTTTTAATGGAGATGGAGT
TGAAGTATCTAGCACCTCTGCTTCATTGGATTGTCATCAGCATACACTAT
CCAACAATCACCAGACTGCTTCATCCTCACTCCACGCAACATTAAATAAT
CAACTCACTGAGATTTCCGTCTCTATACCAAGCAATGAGTCTGCATCCTC
CGTTGCAAATATTTTACAAAAAGGCGCAACTAATAACGCTTCTACAGTTA
CCAATACAACGACAGCCTCTCTCATCAACCGTTCAAATATCCGGCATGCA
TCACCTCGAGAAAATATTCCTCCAACCTCAACATATCCTCAAACAAATAC
ATCTCAACCAATAATTGATAATATCTCTGTACTCGCGTCTCCTCTCCGCC
GACCACCAACAATCGATGCACCACGTGACCTTCCAACTGACCAATCATCT
TCAAGCAATTCGAACCATCATCATCATCATCATCATAATAAACCGCAGTC
GAATTTGGATTCAGTCCTCAGCACCATGACTTTCCATCCCAAACGTAAAA
GCTGTCCTTCTTCCACACCAAATCAAAAACCTTCCCAAGATGCACCGGTT
GCGAAGAAACCGAGAGAAACTTTAGGTCGTCATTTCTCAGAGGAAAACAC
TTCTTTCGCTAAAAACAGCAGATTGCATCCTTCCAATCAATCCACACCCT
TAACAAACCACCCTTTTAAAAGTTTTCCTGGGAGAGTGAATCCTTCGATC
ACCTGCATACCGAATTCCGAGGACGAGTTTTCGAACAATGAAGAATTAAC
GACAACCACGCAACATTCTATTCGAAGACCTCCACAAAATCATTATCAGC
CTCAAAATGGACACCACACACAAATCAATGACCTTCACGCAACAGAAGCA
CGCTCGAGCTCGAGTGCACTTCAACAACCAACGAAGAATACTTTTGATAA
CATTCCCATTAAACAAGAAGTTTGTTTTGAGATTTCGTCAGACCCTGTCG
CTCATTCAACACAGAACAACTCCAGCGAAACAGAATCTTTGACAAGCTCT
TCTGATGAACCCTCAAGAAGACGTAGAACCTCCACTGATGAAGAACCGAG
GAAGTCTTCGACCGATGATGAGCAACACTCCCGCATGAATGGTTTCATCC
ACTTCAACTACTTCTTCCACCGGAGATATTTTCAGTGCATCCACTGCCAA
CCCTCCTCCTACTTCAGCCAGTTTCATGAAGAAAACTTTGGATAAACGAG
CAAACAGCTTCCCACCTTTCATGAAAAGAGAAGCTCTCTCATTTCTAACT
ACTCCACAAAAAACTGTTCTCGACAAAACGACCATCCAATCTTCACATGT
TCAGCAACCTAATAAAGCTGTAAAAATCATACAAAGTTATGCTAATGTTA
ACACTCATTCGTTTGCAGTACCCTCATCTCACAGTCTCACAACTCTCTCA
CAACAAGAAATAACTTCGTCAAGCATTACTGGCTCCAAACAAACAACACA
GCTATCTTTTACCCGAAAACACGAAATAGCACAACCTGCTTTCCAAAGTA
TCCAACAAGCATCTTTTACTAAGGAACATCAAACAGAACAACCTGTCACA
CTTAGTCTTCAATCAAAACAACAAATCATTAATCAAGCTTCTCCTCGTGC
AACCGGTAAACAAGATCAAAGAGGACAGTTAAAAACAGAGGAAAGCAAAC
GCCACATCACAAACTTCACTGAAAAGTACGGCAAACTTTTAGATAGCAAT
ATTTCTTCCATCATTTTAGTGCAACAGGAATGTATAAAGATGATGCAATC
TACACATTCACTCAGAGAACAGTTATCCAACTTTGAAAAAGAAATGATCC
TTCGCCTAGATTCTCTCACACCATCATCCAACACTTTTAATGGAGATGGA
GTTGAAGTATCTAGCACCTCTGCTTCATTGGATTGTCATCAGCATACACT
ATCCAACAATCACCAGACTGCTTCATCCTCACTCCACGCAACATTAAATA
ATCAACTCACTGAGATTTCCGTCTCTATACCAAGCAATGAGTCTGCATCC
TCCGTTGCAAATATTTTACAAAAAGGCGCAACTAATAACGCTTCTACAGT
TACCAATACAACGACAGCCTCTCTCATCAACCGTTCAAATATCCGGCATG
CATCACCTCGAGAAAATATTCCTCCAACCTCAACATATCCTCAAACAAAT
ACATCTCAACCAATAATTGATAATATCTCTGTACTCGCGTCTCCTCTCCG
CCGACCACCAACAATCGATGCACCACGTGACCTTCCAACTGACCAATCAT
CTTCAAGCAATTCGAACCATCATCATCATCATCATCATAATAAACCGCAG
TCGAATTTGGATTCAGTCCTCAGCACCATGACTTTCCATCCCAAACGTAA
AAGCTGTCCTTCTTCCACACCAAATCAAAAACCTTCCCAAGATGCACCGG
TTGCGAAGAAACCGAGAGAAACTTTAGGTCGTCATTTCTCAGAGGAAAAC
ACTTCTTTCGCTAAAAACAGCAGATTGCATCCTTCCAATCAATCCACACC
CTTAACAAACCACCCTTTTAAAAGTTTTCCTGGGAGAGTGAATCCTTCGA
TCACCTGCATACCGAATTCCGAGGACGAGTTTTCGAACAATGAAGAATTA
ACGACAACCACGCAACATTCTATTCGAAGACCTCCACAAAATCATTATCA
GCCTCAAAATGGACACCACACACAAATCAATGACCTTCACGCAACAGAAG
CACGCTCGAGCTCGAGTGCACTTCAACAACCAACGAAGAATACTTTTGAT
AACATTCCCATTAAACAAGAAGTTTGTTTTGAGATTTCGTCAGACCCTGT
CGCTCATTCAACACAGAACAACTCCAGCGAAACAGAATCTTTGACAAGCT
CTTCTGATGAACCCTCAAGAAGACGTAGAACCTCCACTGATGAAGAACCG
AGGAAGTCTTCGACCGATGATGAGCAACACTCCCGCATGAATGGATCTGG
TGAAGGAAGATCGAGAAGAACAAGTCATTCCTTTGAAGTACCTTCGTCGT
CTTTCATCAAGAAAGAATACTTGCAACACCACCAACAACAACACCACCAA
CAACAATACCACCAACAACAACACCAACAACACCACCAACAACACCACCA
ACAACAACACCAACAACACCACCAACAACACCACCAACAACAACAAGACC
AACAACAACACCAACAACAACACCAACAACAACAACACCAAAACAGACAT
CAATCAGATCACGAGAAATCGCAAGAACAAACCAATCTGGTGAAGGAAGA
TCGAGAAGAACAAGTCATTCCTTTGAAGTACCTTCGTCGTCTTTCATCAA
GAAAGAATACTTGCAACACCACCAACAACAACACCACCAACAACAATACC
ACCAACAACAACACCAACAACACCACCAACAACACCACCAACAACAACAC
CAACAACACCACCAACAACACCACCAACAACAACAAGACCAACAACAACA
CCAACAACAACACCAACAACAACAACACCAAAACAGACATCAATCAGATC
ACGAGAAATCGCAAGAACAAACCAAAGGAAAGATGAGATACGAGGAAGAC
GAAGAACTCTTCACTTATTCGCAACAAATCGTCGAAATGGAAGAAGAAGA
AGGCTTGGATGAGCACGAGAAGAATTATCTACAGAACGAGAAAGGAAAAC
TTCGCTCATCGTGGAACACGCGCTGTAAAAGGGCAGCTGGTCTTGATATT
GCACCACGAAAGAAATCGCACGGGCGGCTAGTGGCGGCACACCCGCGACC
GCTCGGTAAAGAGGTGATACAGAAAATGTTGAATCGGAAGAAACAGGAAG
AGAATATTAAAAAATTGTTCGAGCAGGATGCCATTTGGGAGGTTTTTGAT
CAAGAGGATCGCCAAAATGATGATGGATGAAAGGAAAGATGAGATACGAG
GAAGACGAAGAACTCTTCACTTATTCGCAACAAATCGTCGAAATGGAAGA
AGAAGAAGGCTTGGATGAGCACGAGAAGAATTATCTACAGAACGAGAAAG
GAAAACTTCGCTCATCGTGGAACACGCGCTGTAAAAGGGCAGCTGGTCTT
GATATTGCACCACGAAAGAAATCGCACGGGCGGCTAGTGGCGGCACACCC
GCGACCGCTCGGTAAAGAGGTGATACAGAAAATGTTGAATCGGAAGAAAC
AGGAAGAGAATATTAAAAAATTGTTCGAGCAGGATGCCATTTGGGAGGTT
TTTGATCAAGAGGATCGCCAAAATGATGATGGATGA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_044062	XLOC_044062-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000089_pilon	genome	sc0000089_pilon:749149..753513 -

Properties


Property Name	Value
Aaloc	2590-2943:355
Aaloc	2299-2586:1009
Aaloc	448-2295:3024
Aaloc	355-444:3606
Aaloc	1-354:4366

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XLOC_044062 (mRNA) -