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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000061_pilon:116172..123314+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043951 ID=XLOC_043951|Name=XLOC_043951|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7143bp|location=Sequence derived from alignment at sc0000061_pilon:116172..123314+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAGAGGTTGTATTGGCATTATGGTTTTTGGCCTTACTACCTCTGGT
TAAAGGAGAGGCTATGATCTTGCCCTCTTTTAGTTGGGATCCAAGAAACC
CGATGTAAGTATTTACCTTTGGTTATCTTTTTGACTGGATTGGACATTCC
TTATGAAAgagttaaacattttttggtaTTAACGGTTAACTTACACCAAA
GACAGTTTACACATATAGCAAGCTTATAAAAAGTCATATAAAACGGCTTA
TAAAAGTCCCTTGCTTTATCTCATTTGATTCTTCAACTTCGAACATTCTT
GAAAGCACGAAATGGAATTTCTCTAGCAACTATCATACCACAATAAACGA
AATTGACTAAGAATAAGTAACATTTTTATCTCAGTGAAGTCAAGGCAAAG
TgactgttggaaagataataaGGGCGGaaaaaaaaTACTAGACTGGCGAA
TACAACTGATCAATCACAGTTTTGCTAACATAGTTGACTTTCGTATCCTA
CTTATAAGTGGTTTTGGATGACTCTAAAAGTTTCCTATTTTCCTCATCAT
TTACAACTTTTGATTAGCACTCTAATGAGAAGAATTGTCATAGAAAAGCG
ATAGATCCCTTTTTATGTCATCAAAACTGATTGTatttttataaggaaaa
agttagCGCCCTCTAGCAACTGTAGAAGAATTGCCATAGAAAAGCGATAG
ATCCCTTTTTATGTCATCAAAACTGATTGTatttttataaggaaaaagtt
agCGCCCTCTAGCAACTGTAGAAGAATTGCCATAGAAAAGCGATAGATCC
CTTTTTATGTCATCAAAACTGATTGTatttttataaggaaaaagttagCG
CCCTCTAGCAACTGTAGAAGAATTGCCATAGAAAAGCGATAGATCCCTTT
TTATGTCATCAAAACTGATTGTatttttataaggaaaaagttagCGCCCT
CTAGCAACTGTAGAAGAATTGCCATAGAAAAGCGATAGATCCCTTTTTAT
GTCATCAAAACTGATTGTatttttataaggaaaaagttagCGCCCTCTAG
CAACTGTAGAAGAATTGCCATAGAAAAGCAATAGATCTTTTTTATGGCAT
CAAAACTGATTGTATTTTTGTAAGGAAAAAGTTACCGCCCTCTAGCAACT
GTAGTGGAATTTTtgcagtgaaaaaaaattactactGTTCCtatgtttct
tttttatgttttcgacatttatctcggaaagtgatcccttttttattttg
tcttatGATTTATCAGAATTTCCAGTTTATGATTTACTAGGTCTATCTAC
TACTTATCAAAGATATTTTTGCGGTAATTCGAAGTGTTGCTCACTATCGt
tgtttttagcattttaaagtGTGATATCGTAGCATAATTTTTGATGTTGG
TTTTGATACTTCTCATTTCCCATGAATAATAATTAATGATGTTTTTTCTT
AATGATAATCGCTAAAAAGAGTTAACACCTTGGAAATACCGTCGTTCCGT
CTTTTCCGAACACTGATTCTCTTCCGCTGATTTGTATAAATATTTGCAGG
gcgatttcaaatttttgataaattttttctatttcctTAAACTCGACCGT
CTGATTTCCTCCTTTGCTGGTTGTATGTCCCataatataaaatttgaaat
ttctcggTTAAAGTCACTGAATAGAGAAACATACTACTACTGTTTGACAC
AGAACTATCAGTAACCTAAGATTAGATTTTAGGtttacagtagcgtagac
aggagggcgcaaaatttgggtaggagagcagatttttatgacacggtaat
tatttttttatattatgaatagataactactgtgtcataaaaatctgctc
tcctacccAAATTTTCCGCCCTCCTGTCTACCTTACTGGTTTATATCCAT
TCTCTAGCATGTTTTCCAGGTGAATTATATTGAAAACCTATCATTTCCTC
CACAGAAAGCCTATTAGCGGAATCATGTATTTGCTACACATTTACAATGC
GTAGAATCGTGTTTTTGCCACCGTGCGGTCCACTTTATTAACTGAATTTC
CTTTTATATTTCCACAGGTTCAAAGGCAATGTATGCGGTGGTAATGATGG
TTACGCACATATCAACGTCCAAGAACATTCAGTCATTCACTTCCTCTGTC
CTTCCTCCTCCATCATTATTTCAATCCAAAACAAATTTTCCAACCAGTTA
AATATGTACGAAAATATGTTCTTAGTTTCCAAGAAAGAATTCGATGAATG
CCGAGTTGAATCACCAACAGAGAAGAGCGTATTGGATTGCGATTCTCCGA
AACAAAGCAATTCTTTGCTTTACAGACGTTTCTATTTCTCCAGTTTCACG
AGTAGCTCCATTCAGTTCTTCCCGAATCAAACTTATTATTTTATCGGTAA
GATTTTACCTTAGATgtatagactttttcataaattacgtcgcGAGCAAC
ACTTacatcgttttcaaaatattgctatggtaattgatacCCAGATGAGT
TTGTAAGAGGTTTACTCTATTCATAAAAGAAACACTCGAAGACTCGATCA
GATTCAAGAGATatataatcaccttggtaatggtttcaaaacgaggcagt
cgttgcactcaaaatagattatgaaaaggtttattgaTCCCTTGATTTCC
AAAGAACTAAATTTCCATAGGAAAGCACTGACCTAAACCTGGGGGACTTG
AtttttttACCTTTACTAGAATTGACGTTTAAGGACCTGATTCTGACTAA
ACCTAAGCTTCTAAAAGTGTTGTGCATATAATGaaaaaaaCAGTTAGGGC
TGATTTCAGTCAAATGACTTTTAATGGAATTAGGTTGAACTATTTTCCCG
CTATGATTGTTTTCGATAAGGTCTCGGCGATGTCAGTCCTTTAACTGGAA
TGGGGGTGATTTAACAAAGACCATTATGAgggtcatcaaaattttgttta
catttgaacaTAACGTTTTATCCATCGCAAATTTTGCTCTTCAGGTCTTA
AAAGTAACTGTTCATTCTGTCTATGCGTCATCGGTTTTAAAACTGACCGT
CTGGGGGATCTGTAAACTCGAAATTAAAAACAGTTATAATTAAAACAACG
GATAGATTGTGTTTGAAACTCAGTTATTGACATGTCAATCGTCTTAACCT
TGAAACTTAACTTCTTTACTTTGATCCCTTTAGCCTAGATTATCTCGACC
TTGTTTTtcgtttatatttttttttttgaaaattgaattatttggCTTGA
ATTATAAAACTGAAACTTGGGGGAATGTAAATTTCTTAATGATAACAAGC
CATGTACTTACTCTCTTACAAACTCTCAGGTGCCTATAGGTTGCCCCTtt
atcaaaattggaaaattttcccaCACCCTTCCGTTTATTATAGTCAATTT
TTATTGGGTTTTGATTGGTTTTGCGAtccgaccgttatttcaagCCCTGC
TAGATATTTTACATATCAACCTATCAATATTATTCCCTTACAGCCACTTC
CAATGGTAGTATTGCAAGTCTAAACAACCGTTCGGGCGGTCGTTGTACAT
CTGATAATATGCGACTTGCAGTCACTGTATGTGCATCTAAAGAAAATTGT
ATCAACGACGACAAACATTTGTGCCGCacaccgaaaacgacaccaactcc
ggcgacaacgacaacaacaacgacgacaactccgacaacaacgacaacga
cgactcaaagcacgacaacTGAGAATGAAGTGACGCCGAATGCAGcgtca
aaacaaattttgaaaggtattttttttcattttttttttcacgtaCGTTT
TGTCAAGAGCATGTCTAAGAGAATATTAATTTCGATTGCGGTGGCCAATT
ATGACTTTTTGCCAATTTTACGTATTAAGAGTTTATCCTTGGTTCAAACA
ACTTTGTCATCGAGTGAGTCTTTAGAACTTAAGCTTTCAACATTGCCAAA
ACCATAGTATAAGTAGTAGGCATTATGAATGCGTATGTTTATTTAGTGAT
GTGTTTTGGTTTGCTGAAGGCCCTCTTTGGAGTTGTTCCGAGGAAGTTAC
TCAGCACTTCCGAGTAGAACGTTAACTAACCCTTTGAATAATGTAACCGC
AAAATGGatattgtttattttgattcttttgttttcacacatTAACAAAT
CTGAAATCCCCTCCTAAGGGTGAGAGGTGTTGTTGGAGAAACATAGGGAA
AAATAAAGTCATTACCAAGTGTCAAAATCAGGGGAAGTTTCTATCATAAC
CTGGTCTTTAGTAGATCCCTCGaaaaaaaaTCGTCTAAATTCTTGCTTAT
GAAAGGCTCTCTTTTTAAAGTTTGCTATGGAtttttttAACTTAAGATGA
TCAATTTACTGATGAGTTTTAAGTTTTCCTTTACGTATTTAATTCTCATT
CCATCCTTCTCCGCCAttattattttcaaacaaatatagtgtaaaaaaaa
tattttcataccaaatttagaaatttgacaAAACAGTGTTATTGTAACTG
ATTTTATGAGAAAGGTCAACTAAACCCACACATGATTTTCGCAAGGACAT
GCCAAGAGTGTACActttattcattcatttcttTGAGAAATTGAGAAGAT
TGttcgattatttttgatttcataaCATCAAGTGCAGGTTAcataaacac
ttttttttacCATGACGTATTTTACACGAAGTCTCAAAAAATTCCGTATT
TGCTCTACAGTATGTCCGGAAAATAACGGATCAAAatttatataaataaa
aaactttattactttttccaggggggggggtgaagcagttagtacaagac
atcatgcctactaactgctttctcggaagaagttagtaacaccaccacct
tggtacacttagtacagttagtactaactgaatttagccttgaaaaaggc
ttttgaccttcataaattcaataaaatcaaagaaaataaaatttaatatt
cttaaaaatgacTCAATTTTCCGatagctttcaataggaaaaaacaacat
tttagaaaatcaaatttctattgcaaccagcaaattgtttttaagattta
aaaaaaaaaattcgaaaatttgaaaaaaaaatctacttcccaaaaaattt
tttggtaaaatacggtctttttttttaattttctcacaaaatcctatttt
ttacacacttagtaccaaaatttggcaaatttttagcaggggaccaccct
tttttgcagttagtacatctgagtactaagtgattttatccaattcatct
ggcacaccaccacggtactaacccgcatgatgtcttgtactaactgcttc
accccccctgcTTTTTCTGAAATTCAGGTCTTATTATtcgacttattttt
caaaaatttggtcGGACTATCGGACTATGATCTCGGGAATATAATCTCTA
ATAATTAGACGACTAAATTCCATCTTATTTCGATTATTGTGGACTCAAGC
GAGGTTACCAGTTTTACTCATATTAGTTGGGGCCAACCCTTAGGATCCGT
AGCATCTTTTATGGGACGCAACCGCATATGATATTAGATCGAATGTAGAT
ATGACTTTGAGATTATTGCCGGCTTATGCTAACGTTTATATAatgtttat
aTaaaaatatgtacacaATTCCGGTTATTCTCAGTGCCAAAAGCGCTCGA
TGATAACTTAGAACTGTTTAAATTatgaagaaagatttttttgactgatg
TCATCCACACGGGCAGCATCAAACTTTGAGTACCAAAATCTACAAGTTTC
ATTCCTAATAGTagtagtaagtttgcgaccacaGTCGAGCACCACCCAAA
agctcccttttctctagctgtctacccgaaggtaggggagggcgctaCTT
CTTTCCCTGGATTTTTCATTCTTAATAACCTATAAAAGTATGTATGAAAA
CGTGTGtcattttttctcatcttttagaCGAGTCGTGTTCAAAAGAAGGT
TTCGGAGTAACTGCTGTTGCTTGTTTGATCGGAGGGCTTTTCGCTGGTCT
TGTGCTCGGCTTCTCTGTTGTTCTTGTCACACAAAAGTATGCTAAAAGGT
ATAAAACTTTATTCATTGTTTCCCCTTTTCTATGTCACAAGGAATCATAC
ATAAGAATAGAATCCAAATTATTTGATATATCGCTCGTAAATCAAAGTCG
GCAGACTTTTATTATTCATTCTAAACTTCTTTTGCTTCTTAACTTTTTGC
TCTCCGAACTCTGTAAATCACAGtcttaaaaaatcttctttcgaATCTCT
CTATCTCTCCGAACAAcatagaaacattcgaattagCACGAGACTAAcgg
aattttttctaaaaataattttcgatttCTATTTCgcaattgaaaatgaa
aatctttccaCTCTCAGGtacaagaagaagaagaaagtgaaagcGGCCAA
GTTAGCCATCATAAACAAAGATCCTGCTATATTTGAAGATAACAAGGCTT
ATCGATATTCCATGGAAGGGAAACGGTTGCTAAGCACCAGTTCTAATGGA
TCAAGTGAACGATATTCTGTTGTCCCACCTGTCCCTGGTAAGCCTAATTC
AATTgtaacttttcttttctttttgtaatgtACTCACCGGCTTTTTGTTT
ACTCTgaccttttgaaaactatttccAGATACTATCGTTGTTTCCCCTTT
TCTATGTCACAACATGGATTGTCACAAGGAATCATACATAAGCTAACCTT
CTTAATCTTGCGGCTAACCGAAATCTTTGATTAAGGCACTATGGGTCTGG
TTCGATTAAAGAAGGCTTATAGTATTTTGTCCAGGATTTAAAATCCAAGT
CACTGCTTTTACCGATACATATTTCTCCAAGAAGGTTACACTTACCATCA
AAAgagttaatgttttcttttatgAGTTTGTAAGACCTTATTTTGTATGT
CCAATGTTGTTTTAATTTTAGACCTAAGACCTTTTcattattgttgtttt
tctaCTTACGGATGAATGAAAGAGTCAAACATTTCCAATATGAACCTTGC
TGAAACCTATTGAAAAGGATGCCTTGCTCCAAATGAATTAAACCGAAGAA
CGATCTATTTTAGTGCattaatttgtaaaatttgatcttctttttatttc
agttcAAAGGGTATCACCACCACCAGGCACTGTTGCTGTTTAA Coding sequence (CDS) from alignment at sc0000061_pilon:116172..123314+ >XLOC_043951 ID=XLOC_043951|Name=XLOC_043951|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2076bp|location=Sequence derived from alignment at sc0000061_pilon:116172..123314+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGAGAGAGGTTGTATTGGCATTATGGTTTTTGGCCTTACTACCTCTGGT
TAAAGGAGAGGCTATGATCTTGCCCTCTTTTAGTTGGGATCCAAGAAACC
CGATATGAGAGAGGTTGTATTGGCATTATGGTTTTTGGCCTTACTACCTC
TGGTTAAAGGAGAGGCTATGATCTTGCCCTCTTTTAGTTGGGATCCAAGA
AACCCGATGTTCAAAGGCAATGTATGCGGTGGTAATGATGGTTACGCACA
TATCAACGTCCAAGAACATTCAGTCATTCACTTCCTCTGTCCTTCCTCCT
CCATCATTATTTCAATCCAAAACAAATTTTCCAACCAGTTAAATATGTAC
GAAAATATGTTCTTAGTTTCCAAGAAAGAATTCGATGAATGCCGAGTTGA
ATCACCAACAGAGAAGAGCGTATTGGATTGCGATTCTCCGAAACAAAGCA
ATTCTTTGCTTTACAGACGTTTCTATTTCTCCAGTTTCACGAGTAGCTCC
ATTCAGTTCTTCCCGAATCAAACTTATTATTTTATCGGTTCAAAGGCAAT
GTATGCGGTGGTAATGATGGTTACGCACATATCAACGTCCAAGAACATTC
AGTCATTCACTTCCTCTGTCCTTCCTCCTCCATCATTATTTCAATCCAAA
ACAAATTTTCCAACCAGTTAAATATGTACGAAAATATGTTCTTAGTTTCC
AAGAAAGAATTCGATGAATGCCGAGTTGAATCACCAACAGAGAAGAGCGT
ATTGGATTGCGATTCTCCGAAACAAAGCAATTCTTTGCTTTACAGACGTT
TCTATTTCTCCAGTTTCACGAGTAGCTCCATTCAGTTCTTCCCGAATCAA
ACTTATTATTTTATCGCCACTTCCAATGGTAGTATTGCAAGTCTAAACAA
CCGTTCGGGCGGTCGTTGTACATCTGATAATATGCGACTTGCAGTCACTG
TATGTGCATCTAAAGAAAATTGTATCAACGACGACAAACATTTGTGCCGC
acaccgaaaacgacaccaactccggcgacaacgacaacaacaacgacgac
aactccgacaacaacgacaacgacgactcaaagcacgacaacTGAGAATG
AAGTGACGCCGAATGCAGcgtcaaaacaaattttgaaagCCACTTCCAAT
GGTAGTATTGCAAGTCTAAACAACCGTTCGGGCGGTCGTTGTACATCTGA
TAATATGCGACTTGCAGTCACTGTATGTGCATCTAAAGAAAATTGTATCA
ACGACGACAAACATTTGTGCCGCacaccgaaaacgacaccaactccggcg
acaacgacaacaacaacgacgacaactccgacaacaacgacaacgacgac
tcaaagcacgacaacTGAGAATGAAGTGACGCCGAATGCAGcgtcaaaac
aaattttgaaagaCGAGTCGTGTTCAAAAGAAGGTTTCGGAGTAACTGCT
GTTGCTTGTTTGATCGGAGGGCTTTTCGCTGGTCTTGTGCTCGGCTTCTC
TGTTGTTCTTGTCACACAAAAGTATGCTAAAAGaCGAGTCGTGTTCAAAA
GAAGGTTTCGGAGTAACTGCTGTTGCTTGTTTGATCGGAGGGCTTTTCGC
TGGTCTTGTGCTCGGCTTCTCTGTTGTTCTTGTCACACAAAAGTATGCTA
AAAGGtacaagaagaagaagaaagtgaaagcGGCCAAGTTAGCCATCATA
AACAAAGATCCTGCTATATTTGAAGATAACAAGGCTTATCGATATTCCAT
GGAAGGGAAACGGTTGCTAAGCACCAGTTCTAATGGATCAAGTGAACGAT
ATTCTGTTGTCCCACCTGTCCCTGGtacaagaagaagaagaaagtgaaag
cGGCCAAGTTAGCCATCATAAACAAAGATCCTGCTATATTTGAAGATAAC
AAGGCTTATCGATATTCCATGGAAGGGAAACGGTTGCTAAGCACCAGTTC
TAATGGATCAAGTGAACGATATTCTGTTGTCCCACCTGTCCCTGttcAAA
GGGTATCACCACCACCAGGCACTGTTGCTGTTTAAttcAAAGGGTATCAC
CACCACCAGGCACTGTTGCTGTTTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061_pilon | genome | sc0000061_pilon:116172..123314 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1000-1038:7105 |
| Aaloc | 829-996:6369 |
| Aaloc | 709-825:5930 |
| Aaloc | 436-705:3496 |
| Aaloc | 106-432:2069 |
| Aaloc | 1-102:1 |
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