XLOC_043899 (mRNA) -

Overview
NameXLOC_043899
Unique NameXLOC_043899
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:728150..733730-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043899 ID=XLOC_043899|Name=XLOC_043899|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=5581bp|location=Sequence derived from alignment at sc0000111_pilon:728150..733730- (Clytia hemisphaerica_ch_hm2_pilon)
TGGCTGGAAGAGATTTTGGCACTGAACTGGCAAATGCCTATGTCAATGAG GTTATTTCTGATGATTAATACCTCGTGCTGGCTGATGCTACAGAGGTAAA TTTTGTCAATTAATTTATTAATTAATTTGTCAATTGAAAGTCGACACTAA GTTTTCCCGATAAGTCGAATTTGCTTTCCCGGGCCGTCGTGATGTCACCA ACCTTTGCATTCGCCGTAGCGCTAGAAATCGAATTTACATTATCTCGCTA TTGAAAGGTTTTGTGACTGAAATTGTCATACCTGCGCTGAGGAAACTAAA GCGCCAGGCTTCAGAGGGCTGAAATATCATTAACCGTCTTGTTTATTGGG CGACGTCATTTGTGGCCCGCTCGGAAGGTGCTAAAAACTTGTTAAAGTCA TTGCATTGAAGCGGAAAGACTTGGCTGACGCTAGAAAAAACTGATATGGA TAATAATGGTAATAGCGTAAAGTTTTCCGCTTTGCGTCGGGCCCAAGGGA AACTATTGGGCTAATAATCAAACTGAGCGGGCAGAAAATAACAACAACGA CCTCAAACTGAACGTTATATCCTCAAAAGGCCATAACCTTTTGGTTCTAT AAATTAACCTGCGTTCGTTCGTTCATTCGTTCGTTTTTTTTGTCGATCAG CCAGGTATGCCCGTAAAAGTATCACTTTGTTTTAATGGATTTTTGAAATC TACATGAAATACTGCGCTGATTGGGCAAGTATTTAATTGATAGGCAATCA CAGGTTTCGTTTGAGTGTCCGGTTTGAGCTCTCTTAATGTCAGAGAACCT TATGTATACCAGAACAATTATCTTATTATCATATAACACCCATATTGCTA ACACGGATAATGAACGGCTTTAGTCTAAGGGTGTACGAGTCATTGACTTC CGATCCCGAAGGACTAGACTCGAGACTCTTATTTTCCATCCAGAACGCCT GCACGTGGTTTTTACACTAACTCTTTTACTCAAAAGCAAAGAAACCACTA AATACAATTCGTCGTCATGATTACGGAGCCTTCTGGATGGCTTGCCTAGG AAAGGTTAGAGATCTTACTCCAGCCCTTCGGACTTCAAACTCAATGGTAT GGGTTTGACGGTGTTTATTATTTTTTCTTGCCAATGTTTCGTTATTTGAA GGAAAAAGTGACGGCACTTCAGTGTTGATTGGCGATATACACGTATACCC CAATGTACAAAACCCCGGGGGGGGGGGGGTACTTAGGCAAAAATAGGTGC TGGGTATGTGCGGACGGTAAGGGTCGGGTTTTTCACCTTTCAAAGTCTCT CTAAGGGTTACAAAAATCAGGAAATTTCAAAGTAGTCTCTCTAAGGGTGG GAAAAATCACGATTTTTAGAAAAAAAATTTGATTTTGAGAGAAAAAATTA CAAAAAAGTCTCACTAAGGGTAGGAAATTTTTGAAAATCAGAGAAAATTT TTCGAAAAAGTCTCTCTAAGGGTCACTTTTTCACTAAAATTTGGTCTCTC TAAGGGTCGGTTTTCGGAGGTCCCGTCCGCACATACCCCTCATTCACCAA CCTTAGTACCCCCCCCCCCCCCGGGTACAAAACCTATAATACCGAGTTTA TGTATGTGTGTTTTCTGCAACGGAGGTGGTAAGGTTCTAATTTGTTTAAA TCCTGACTGACTGATGAGGACGACGGTATATCAGCACTTTTACCGTCCTC GATTTTGTGGGTCAAAACTGCGGTCTATTCCAAATCCTTCAGTCGCTTTA CCGTCCTCAAAAGTGCAAATATACATAAACTCGCTAATGTGCAGATAGCT GACATTATCTATCCCGATTCTCACAATTTCATTGGCCAAAAGACGTCACG TGTAGGTTGGATACTTTAATCGTAGAAATTTTAGCGAGACTCATTTTAGC GTTTTAGCGAGTTTTCCCTATTTTCGCTAAAATAAATCTCGCTAAAACAC GCCGAATCGCCAGATCGCTAAAATTTATCCACGCGAAATTTCTGGTTATA TTGCCTTGATACATTTTTATCAATAGGAAGAGTTTCAGTGCAAAGAAATG CTAGAAAACGAATTCAATCAATAATGTAATGCGAGTATTCGCTAAAATTT ATCCACGCGAAATTTTTTGAAATCGTGATTCGCTAAAATAAATCCAAAAA AAATCAAGATTTTTCTGGCTCGCTAATATACGATATCTCTCCTCCTTGCG TTCGATTTCGAATCAAAGAAGTCGCTGCAATTCATCGAACGAACTTTTGA ATGTTTTGTTTGAGCCTCAGTAGTTCTTGGTTTTGACAAATAAGTGTGGC GTTGAAAGGACCTCAAGAAAGAAAAGATTCTTTTATATTTAAATGTTAGT TCTTCGCTCCTCATAACTCTACATGCTCGCTGGTCGCTGGTCCATAAGTT TTGATTTAGTATTGAAATGAAAATGGTATTGGAGGACCCGGGCATTGATC CCGGTACCTCTCGCATGCTAAGCGAGCGCTCTACCATTTGAGCTAGTCCC CCTCTAATAATAATTACAATTTCAACTATTTAAACTTAATTTCTGTTTAT TATTTCAACAAATTAGTGTTTTAATCTGTTTGTTTGAGTTCGGCTGTCAC AAATTTGTTTGATGAAATAATGAGCCTACACGTTTTTTTTTTTATTAGAA CGTCGAAAATTTTTGAAGCCTTCCGATGTTCTAAACTTTTTGAGTTTTAA GCCTAAAAATGTTCTTAAAATGTTCTTATTTTCACCATTTTGTGAGTATT TTTGTGCAATTTCCTAAGAAATTGGGTGTTTTCGAGTCCACAAAGCCTTA AAATGTTCTTAACATGTTCTTAATATTTCGGGCATCGAAGCCTTATGTTC TTATATACTTTGTTCTTATAAAAAAAAAAACGTGTACTCCACTTAAATAA GGTTACCCTGGCAACCCTTACAATCGTGTATTTGCTGCTGTACTACAATA CTGGTAGTGTTTTGTGGCGTTCTATTTTATGAATCTGTAGACACACGTTG TCTGTCCGTCTGTCTTCAGGGTCCTTTGAACATTCATTATTATGGGCCAT TTTAGGGACAGTTTTTTATTTTCATTAGAGAAACAAGGGCCCGGGGGGGT ACTAGGGCAAGATGGGTTACGGGGATGCTCCGCTGGTCAGGGTACCTTTT CTAACCTCCACGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAA ATCAGTCCCTCGTAGGGTGCCTTTTTTTGGAAAATTTGGGGAAAAAGTAG AAAATTTTGGAATTTCAGTCCCATTCAGGGTCACTTTTTTCGCAAATTTC GAGTCCCACGTAGGGTCCATTTTTCGAACCTCAGCGGAGCACCCCCGTCG GTCGACAAGGGTAGTACCCCCCCCGGGAACAAGGGACTGTATCTCTCTAT AGAAACTCTTTTGTAAACTGCGTCTTAAGTTTTTTGTGTTTTTTTATTCT ATTGTTAACCCGACAGAAACTTCTGTTCTTCTTTTGTTCATTCCCAAAAT GTGTAAACAGAAAAAACTCTTCTTTCAATCTTTTAATCATCTTTTATTTA CTCACTTTCATTTTCGAACAAAAGGGAAAGACATTTTACACATAGATTTC TTGAATGACATTTTTGAAGGAAGGATTTACTATATTTTACCGGGCATTTT CCTCTCTACTGCGAAGCAAACTTTTGCCTATATTCAGTAACCATGTCTTT GAAAAGCGAACGGCCGCACATATGGTCATTTTTAAATCCGAGTGCTTCCC CAGGCGTCAAAGGGACTCAAAGATATTCTATCTAGAAAGATTTAACAAAG GGGATCGGCATGTGGTACCCAGGGAAACAATACACATTCGTTTAATGTTT TTGATATGTTCCCTATTTTTCAGCTCTTTGTTGATGACGAAAATGGCTAC TAACAACTCAACAACCCGAGTAAAGAAATTCTTTGAACTAACTTTCCTGG CTTTGTTGGTTATAGTTTTCTGTGTGTTGAGGCTTTACAATAGTGGTTAC AGTGTATGGACATTCCACACCATCAACAGAACAAAGGAAACAAACCCACG TGATCTCAAATTAACCAATCAGACATCAAAGTTTACAACAACTTCGAAAC CAGATTTAAAAATACCATGGAGATATCATAGCGATGACGATGGTTTTGTG TTTCCACGTGACGAAAATTATTTGACGTCATCAAATCCACATTTGACGTC ATTCTCTGGTTATTTGACGTATGAACCCATTCAACGATCTTTAACTCGCC AATTACTCCAGTTCGAAAATGCAGTAATATTCGCGTATTTCTTAAAACGT ATTCTCATAGTTCCACCAATTATCTTGATCAAAGAGAACAAAACAATCGA AATTCCTGTATCCACTATCATAGATTTCGATTTATTATCCACGATGGTGC GTTTAGTAGAAATGCCTACAAATTATAAAGAATTGTTGAACATTAGAACA ACTTATGAGGTGTGCCAGGATCCTCGACTTGGATTTTGGCTTGATTATAT ACCATCACCAGAGAATATTAATTCGTGGCGTACATTGAAGCAGCAATTAT TTTCCCCGTTGAAATTACGTTTCGATTATCACAATCAAACAAACTATTGG TGTCCTGGGACAGAGAAATATTTTGACCGTTGGGGGCCACCGTTACAAAT TAAAGCTTTATATCGTGGTGTCCTGACTGAGCTATATGAGCGATCTGAAG ATTTGATTATGTTTCAGAGTTCTACACTGGACACTAGCGATACACGGTTC TTCGATCGCAAACGAGTCCGTACAGCGCAGGAAATTCTACTGTTTTATAT AAGGTTTTCGAGCAGAATAACACGATATACAAAACATTTAGCAGACGTTT TAGGCTATGGTTATATTGCTATACTGGCAAACGGAATCAGCAACCGAAAC ACCAATTTAAACCAATATTTAGTTGATAGTTTACGTAAATTCAATACAAC TTCAATGACTGTGTTTATTGTTTCCGGTAGAGTGAAAAAGACTGCTTTTC AGGGTCTACGAGATGCAGGCTACAATCTTGTCTTCGCTGACCAATTTACG GAACGTATTAAGAAATGGTCCTTGAGGAAAGAGATATCTCACGTTTTTTC GTTACTGTTATGTGCATATGCAGCTCATTTTATAGGTTTCCCTGGAACTC CTGATTTGTATTTTGTCGAACATTTGAGACTGCAAGATGTCAAAATTGTA GATGGCTTGGTTGCTGAGAAAATTAACGTTAAATGGGCTAAACATACTAC CAAAAGAAAAGCGGATGATCGTAAAATCTTCCAAAAAAGACCTTCTTTGA AACCGTTGGTTAAGCAAAGTAACACAAAAAAGGAAAAACAGAAAATTTCT GCTTCAGATCTCGCTTCAGATGCTATGAAGTCTACAATAACCTCCTCGAA AATACAACAATCAAAGATTGGTACTCACCATAAAATAAAACAGAATAATC GACATTCATCATTCTTTAAAGATGGAAAACTTTACAATATTGCGTGCACT TTTTGTAATTATGTCACTTATGTGACTGGACAAAATGGTTGTCCAACAAT GAAAGTTCAATGTTCTTCCAATAAATTATAA

Coding sequence (CDS) from alignment at sc0000111_pilon:728150..733730-

>XLOC_043899 ID=XLOC_043899|Name=XLOC_043899|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3606bp|location=Sequence derived from alignment at sc0000111_pilon:728150..733730- (Clytia hemisphaerica_ch_hm2_pilon)
TGGCTGGAAGAGATTTTGGCACTGAACTGGCAAATGCCTATGTCAATGAG
GTTATTTCTGATGATTAATACCTCGTGCTGGCTGATGCTACAGAGTGGCT
GGAAGAGATTTTGGCACTGAACTGGCAAATGCCTATGTCAATGAGGTTAT
TTCTGATGATTAATACCTCGTGCTGGCTGATGCTACAGAGCTCTTTGTTG
ATGACGAAAATGGCTACTAACAACTCAACAACCCGAGTAAAGAAATTCTT
TGAACTAACTTTCCTGGCTTTGTTGGTTATAGTTTTCTGTGTGTTGAGGC
TTTACAATAGTGGTTACAGTGTATGGACATTCCACACCATCAACAGAACA
AAGGAAACAAACCCACGTGATCTCAAATTAACCAATCAGACATCAAAGTT
TACAACAACTTCGAAACCAGATTTAAAAATACCATGGAGATATCATAGCG
ATGACGATGGTTTTGTGTTTCCACGTGACGAAAATTATTTGACGTCATCA
AATCCACATTTGACGTCATTCTCTGGTTATTTGACGTATGAACCCATTCA
ACGATCTTTAACTCGCCAATTACTCCAGTTCGAAAATGCAGTAATATTCG
CGTATTTCTTAAAACGTATTCTCATAGTTCCACCAATTATCTTGATCAAA
GAGAACAAAACAATCGAAATTCCTGTATCCACTATCATAGATTTCGATTT
ATTATCCACGATGGTGCGTTTAGTAGAAATGCCTACAAATTATAAAGAAT
TGTTGAACATTAGAACAACTTATGAGGTGTGCCAGGATCCTCGACTTGGA
TTTTGGCTTGATTATATACCATCACCAGAGAATATTAATTCGTGGCGTAC
ATTGAAGCAGCAATTATTTTCCCCGTTGAAATTACGTTTCGATTATCACA
ATCAAACAAACTATTGGTGTCCTGGGACAGAGAAATATTTTGACCGTTGG
GGGCCACCGTTACAAATTAAAGCTTTATATCGTGGTGTCCTGACTGAGCT
ATATGAGCGATCTGAAGATTTGATTATGTTTCAGAGTTCTACACTGGACA
CTAGCGATACACGGTTCTTCGATCGCAAACGAGTCCGTACAGCGCAGGAA
ATTCTACTGTTTTATATAAGGTTTTCGAGCAGAATAACACGATATACAAA
ACATTTAGCAGACGTTTTAGGCTATGGTTATATTGCTATACTGGCAAACG
GAATCAGCAACCGAAACACCAATTTAAACCAATATTTAGTTGATAGTTTA
CGTAAATTCAATACAACTTCAATGACTGTGTTTATTGTTTCCGGTAGAGT
GAAAAAGACTGCTTTTCAGGGTCTACGAGATGCAGGCTACAATCTTGTCT
TCGCTGACCAATTTACGGAACGTATTAAGAAATGGTCCTTGAGGAAAGAG
ATATCTCACGTTTTTTCGTTACTGTTATGTGCATATGCAGCTCATTTTAT
AGGTTTCCCTGGAACTCCTGATTTGTATTTTGTCGAACATTTGAGACTGC
AAGATGTCAAAATTGTAGATGGCTTGGTTGCTGAGAAAATTAACGTTAAA
TGGGCTAAACATACTACCAAAAGAAAAGCGGATGATCGTAAAATCTTCCA
AAAAAGACCTTCTTTGAAACCGTTGGTTAAGCAAAGTAACACAAAAAAGG
AAAAACAGAAAATTTCTGCTTCAGATCTCGCTTCAGATGCTATGAAGTCT
ACAATAACCTCCTCGAAAATACAACAATCAAAGATTGGTACTCACCATAA
AATAAAACAGAATAATCGACATTCATCATTCTTTAAAGATGGAAAACTTT
ACAATATTGCGTGCACTTTTTGTAATTATGTCACTTATGTGACTGGACAA
AATGGTTGTCCAACAATGAAAGTTCAATGTTCTTCCAATAAATTATAACT
CTTTGTTGATGACGAAAATGGCTACTAACAACTCAACAACCCGAGTAAAG
AAATTCTTTGAACTAACTTTCCTGGCTTTGTTGGTTATAGTTTTCTGTGT
GTTGAGGCTTTACAATAGTGGTTACAGTGTATGGACATTCCACACCATCA
ACAGAACAAAGGAAACAAACCCACGTGATCTCAAATTAACCAATCAGACA
TCAAAGTTTACAACAACTTCGAAACCAGATTTAAAAATACCATGGAGATA
TCATAGCGATGACGATGGTTTTGTGTTTCCACGTGACGAAAATTATTTGA
CGTCATCAAATCCACATTTGACGTCATTCTCTGGTTATTTGACGTATGAA
CCCATTCAACGATCTTTAACTCGCCAATTACTCCAGTTCGAAAATGCAGT
AATATTCGCGTATTTCTTAAAACGTATTCTCATAGTTCCACCAATTATCT
TGATCAAAGAGAACAAAACAATCGAAATTCCTGTATCCACTATCATAGAT
TTCGATTTATTATCCACGATGGTGCGTTTAGTAGAAATGCCTACAAATTA
TAAAGAATTGTTGAACATTAGAACAACTTATGAGGTGTGCCAGGATCCTC
GACTTGGATTTTGGCTTGATTATATACCATCACCAGAGAATATTAATTCG
TGGCGTACATTGAAGCAGCAATTATTTTCCCCGTTGAAATTACGTTTCGA
TTATCACAATCAAACAAACTATTGGTGTCCTGGGACAGAGAAATATTTTG
ACCGTTGGGGGCCACCGTTACAAATTAAAGCTTTATATCGTGGTGTCCTG
ACTGAGCTATATGAGCGATCTGAAGATTTGATTATGTTTCAGAGTTCTAC
ACTGGACACTAGCGATACACGGTTCTTCGATCGCAAACGAGTCCGTACAG
CGCAGGAAATTCTACTGTTTTATATAAGGTTTTCGAGCAGAATAACACGA
TATACAAAACATTTAGCAGACGTTTTAGGCTATGGTTATATTGCTATACT
GGCAAACGGAATCAGCAACCGAAACACCAATTTAAACCAATATTTAGTTG
ATAGTTTACGTAAATTCAATACAACTTCAATGACTGTGTTTATTGTTTCC
GGTAGAGTGAAAAAGACTGCTTTTCAGGGTCTACGAGATGCAGGCTACAA
TCTTGTCTTCGCTGACCAATTTACGGAACGTATTAAGAAATGGTCCTTGA
GGAAAGAGATATCTCACGTTTTTTCGTTACTGTTATGTGCATATGCAGCT
CATTTTATAGGTTTCCCTGGAACTCCTGATTTGTATTTTGTCGAACATTT
GAGACTGCAAGATGTCAAAATTGTAGATGGCTTGGTTGCTGAGAAAATTA
ACGTTAAATGGGCTAAACATACTACCAAAAGAAAAGCGGATGATCGTAAA
ATCTTCCAAAAAAGACCTTCTTTGAAACCGTTGGTTAAGCAAAGTAACAC
AAAAAAGGAAAAACAGAAAATTTCTGCTTCAGATCTCGCTTCAGATGCTA
TGAAGTCTACAATAACCTCCTCGAAAATACAACAATCAAAGATTGGTACT
CACCATAAAATAAAACAGAATAATCGACATTCATCATTCTTTAAAGATGG
AAAACTTTACAATATTGCGTGCACTTTTTGTAATTATGTCACTTATGTGA
CTGGACAAAATGGTTGTCCAACAATGAAAGTTCAATGTTCTTCCAATAAA
TTATAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043899XLOC_043899-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000111_pilongenomesc0000111_pilon:728150..733730 -
Properties
Property NameValue
Aaloc97-1803:1708
Aaloc1-93:5582