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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000348_pilon:303615..308494- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043877 ID=XLOC_043877|Name=XLOC_043877|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4880bp|location=Sequence derived from alignment at sc0000348_pilon:303615..308494- (Clytia hemisphaerica_ch_hm2_pilon)
GGTGGAATGACAGTGGGTCAATTAACAACAGTTGGTCAACAACAAGCTTA
TGATTTGGGTCAACTTTTCAACAAAGAATATATCCAGAAATTCCAACTTC
TGTCAGATCATTATCTCCACAGCGAAGTGAGGTAAAGCATTTTGTTTTCT
TCGTCTATGCTAACTATTGGCTTTATTTTTGACTAATGCTGTAAGTAGGG
CTAAAATAATTACTCAGAATATGGAATTTGAAATGTTGTTTTAGACAGTA
CCAAAAGGCACTAAAGAGTTAATATTTGTGACTTATAGGTTACAATAGTT
GATGCAGTGAAAATTATTGTATCAATCCTGAAAGTTTCATGTATTATTCA
AACAATCCTCAGTTGAAAATAAAATGTTTAAAAACTGGAGTTCCGTTGCT
CGGTGGATGGTTTGGCTAGTTCTTGATGTATTGAGTCTTGTTGTCTATTT
TGGAGAACGTAACGTCGAGAAATATTTAACAACTTTCTTGTTGTATTCAA
TCACAATTTCTAGTCATATTCGACTGCAGATCCTTTTTGATTCGTTCGGA
TTTGCTATTAACATTTTTGAAAACGGAAAGATCATTGTTGTGGTCTCATA
CTTATAGGTTATACATTCTTTCGATGGTATTTGCTTCAACTTCAAATGCC
CTCCTGTAACACATTCAGAATACATAATAGAAAAAAAACACATTATTTTC
AGGGTACAGAGCACTAATGTGAGGAGGACAATATTGACAGCAAGAAGTGT
TGTTGCTGGAATGTATGGAAAGTCTAATATCAAAGGTATGTAAATATTTT
TGTGTCATACTTTAAGGCGTGGCTCATTTAAATTGGAAGCTAGTCTTCCA
GGCCAATTTTTGGACCTACCTCCGAGTACCCCGGTGGATGTCCTATAAAT
TAACCTGTGTTCGTCTGTCGTCCGTTTGTTTGTTCGTCTGTTACCAGCTT
TTCTTGAGATTGGCTCATTAGTTTTTTCTGATTTTTGGCACAAAGATGCA
AAATGGCAATGGCCAAAATGTGACGGAGCCCAATTTTCGAGAAAAATATT
TTCCGGCCGAAAATACCGGAAACATGCCGGAAATTGCTGTTTTTCTAGAT
TTTCATTGGATTTTTTCCTTATAATTGGTTGTTTTTTCATTCAAAAACAT
TATTAATAGCAATGCCCACCATCAAGCATGTTTTAATTTTCAATAAATTT
TGGAGCCGGAACTATTTAAAACAACTATTTTCTCTGGAAAGACAGTATTT
CTTGAATTTCTCGAGCTGTACTTTATATTTTTTATGAAATTTTGCACACT
GATGCAAAATGACAATACCTAAAATTTGACAGAGCCCAATTTTCAAAAAT
AAATATGCCAGAAAATCCGGTTTTTTGACATTTTCTCAAATTTTCATCCT
TAGTTTTTTCTGATTTTTTGCAGAAAGATGCGTATCCGCAATGCTCAAAA
CATGGCCGAGTTCGATTTTTGAGAAAAAAAATTTTCCGGTTGAAAATGCT
GGAAATCGCTGTTTTTGAAGATTTTCATTTGATTTTTTCCTTATTATTTC
TATATTATTGATAACAATGCTCACTATCAAGCATGATTCAATTGTCAATA
AAACAGATTTTTGCGACTAGAACTTTCTATTTATTTTTTCCCTACAACCC
TTCCCTCTCCCCCCCATCAACAATCAATGATGAATTTATTGCATTTTGCA
TTTTTGCTAAACGCTATATTTTCTGACTGATTTTTTTCATTTTTCTCCTT
GCATTGTTATCTAACTTTCATCATCAGGTAGGTCCATTCAGCATCTAGCT
TGTTTTTATTTGATTTTAAGGGTATGGATCAGTATGGATTGCTGTGGTTT
TGTTTTCTTTCATACAAATTTCTCTCAGTTTTTGAAAAAGTAATACTAAA
AACCTTTTGAAACATGTTTTGAAATTTAATTTATACTTTCAAAGCCTTAT
TTTGAATATTGGATCAAATGTGTAATAGTTATTGGACAGTTGCGAGTACA
ATATGAGGAATATTTTACGAGTTCCGAGATTTTTCCGTCCAATATACAGA
AAATCCGGAACAAGTAAAATATTTCCATATTGTACAAGCAAAATGTCTGA
TAACTGGTTTATCGGTGACCCAAGAAATGCACTTTTTGTGTTGGAAAAGA
GCGCAGGACACTTTTGTAGCAAAGTAGTTTCTTGTCAATTTATATTTTGT
AGTACCATGTAAAATACAAGATACTGTACTCTTTTCAACCAATCAGACTG
CAGCTATTTTTTGTATCGCCAATGAATTAACTTATTTTAAGATAATGTAT
CCTAAACTTAGCCGATATTTTGTTTCCATACTCAACGTCATCTTAAGAAC
ATCTTTTGTTTATTTCAAAGAGACTTTGATCATCAACACGATGCCTTTCG
AAGAAGAATATTTGCTTCCAAATTGGAGTCATTGTTTACGTTTGAAAGAT
CGGTTTGAGTTTCTACAAAAATACATGAAGTATCTACCAAGCCAAGATGA
AGTGCTTTATTTCAACCGACTCATTGAGAATACTGATCAAGAAAATATGA
TTCAATTTGTTCCTCTTCATGACATAATGGTGTGCCGAGAGGTAATTCAC
TGTTCTTGACCACCTGTATAACGGAAACCCTGCCTTTTTCACTTATAAAC
ATTACTGGACCCCCCCCCCCCCCAAAAAAAAAAAAAAAAATTAGCCTGAG
GGTGGCTAAAAGGTTAAAAAGTCTCTGGCCCATGATTTACAAAGTTTTTT
TCAAACTGCAAAACAAAAGTTTCCAAGCGCAAAGTAACTTCTTTTCCGTT
TTGCGCCCCTTGATCAATTTATGTAAACAGCTAACAAACTGAGCCGGTCA
CCGAAGTTGTTTTTCCAATCCATGTTGGAGGATAGGAAGTTATTTTTCAA
GAAAGGGGAAGAGGAGGTCGTATACTTTGCTCGACATGAAAAGATTGACT
AAGTTGGTTACATACAACCAGCCCGAGTGTAAGATACTGGGTATTTCTAA
GAATTATTTTTTCCAAAAGGCACATGGCTTCGAAGTTCCCAAAGAACTGA
AGAAAGTAGAAAAACATTTGGTCAGACGTGCATCAGAAAACCAAGCCCGT
ATTCTTGGTGGAAAAGAGTGAGTTATACATAATGGGTATGAACCAGTCCT
GGATAAGTTGCCTCTATGGTAACCACAAGTTGACTTCGGATGCCTTTTCT
TGACTGATGAAGTGCCTAGCCTTCTTCGAAAACCAATTTTGTGGTTAAAC
TACTTTGAAAGATTCTATGTGATAAACGTTTGTTGTGTACAAAATTATCA
GTTAACTATTTTGCTGGTTGATTTAATCCTAATCTTTTCACCTCAAAATT
TCCATTTACAGTATTGATGCATTGAGAATGTCATGTGGGAATTTACTCAA
TGAATTTTGTGAGGTCATGGAACAAGCAGTAAAAGACAATCAGTAAGTTC
GTATACTACAGGGTATCCATTTTTTTTTCATTGCACGGCATTTTAAGGCT
TCCTCCTAAACGAACTGATTTCCCGCCAAAACTATATTCCATATTGCAAG
GGTATATCATATCACAAGAGTTTCTTTAACGTTTTCGATACTGTCGTCGA
AAGTAAATTTCCTTGTAAATTCACTTTACCAGACTTCTTAAATGCTGAAG
ACGCTGTCAAAAGTTGATAGGTCATGTAAGACAATTTGTGTTAAGACATT
TTCCTTTTCTTAACGGGCACAATACACTAAATATATTCTTAGTTTTGTAT
GGGAAAACGTTTCATTGATAAGACGAGGAAGATAAGAATGACCCTTGTAT
CATATTATGTTTTCGTTATAATCTCAGCCCCTACAAGATGAACCTATACA
GTGCGCATGACACTACATTGAATGCTCTACTCATGGCCTTTGGAAAATGG
GACCGTTATTCTTGGCCCAGATTTGCTTCTTATATTGCATTCGAACTTTA
CAAGCATAAAGAGGTTTGAAGGCTTTTTTCTTTCTCTTGTTTGACATTAT
ATAATTAATCATAGTTAGCAAGCTAGAGGCCAGTTTTAAATCACGTTTGT
AAGTTTATTCCTATAGTTTAGGCCGTATTAAACTTCATAGCAACGTCAAT
TCATTATCTGACAAAAACTTGCCTTCTTTCGATTGAACTTGACCTGACCG
ACCTCTATTGCAAATATTTTTACGACTTTAGTAGGTTAAAGTTCTGATAA
GTTCTAGGTCAAAACATCACCTCAAAAATCACAGTGTGCTTTAGAGGGTT
CATTATTAATTATTCATTTTTCTACAATTGAATATTTTGAAAAATGAATC
AAAAACATGATTTCCAAATCCTATCCTCAATTGAATCGTATTCAAACATG
ATACCTTCTTTTACGTGAAAAGGTGTTATTGTTGAAATAAAAAAGTTAGA
AAGATGAGTATTATTTCCTTGACATTAAAGGTCATATTAAAAATGAACCT
TTAAGTCCGTTGATCCTCACGAGAAACTGTCATTGAAAAGTTGAAATCAA
AATTTGATATCTTTATGTCAAAGTTTTATAATCTTTCTTGTGTTTTTCAG
GACGATAAACATTACGTGAGAGTTGTATATAATAAAAAATCATTATTGTT
GGATCAAGAAACCAATGCTGAATATATTCCACTCGAAAGGTACTTCTAAT
TTTTTTATTCACAATTTCGTTATTATTTCGAAATTATAATAATTCTTTCT
TTTTTTTCGAAAAGAGGAAGCAAAATTTATTAATATGTAATTCGTTTTCA
TAGTTTGTGTTTCCTTTCGATAATGAAACAAAACATTACAAAAAGGATGA
CTTTCACTTGTTTCAGGTTTTTCGAGTTGTTGAAGAAATATCGCGTGAAA
GACTGGAAAACATATTGTCAGAGAAAATAG Coding sequence (CDS) from alignment at sc0000348_pilon:303615..308494- >XLOC_043877 ID=XLOC_043877|Name=XLOC_043877|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1806bp|location=Sequence derived from alignment at sc0000348_pilon:303615..308494- (Clytia hemisphaerica_ch_hm2_pilon)
GGTGGAATGACAGTGGGTCAATTAACAACAGTTGGTCAACAACAAGCTTA
TGATTTGGGTCAACTTTTCAACAAAGAATATATCCAGAAATTCCAACTTC
TGTCAGATCATTATCTCCACAGCGAAGTGAGGGTGGAATGACAGTGGGTC
AATTAACAACAGTTGGTCAACAACAAGCTTATGATTTGGGTCAACTTTTC
AACAAAGAATATATCCAGAAATTCCAACTTCTGTCAGATCATTATCTCCA
CAGCGAAGTGAGGGTACAGAGCACTAATGTGAGGAGGACAATATTGACAG
CAAGAAGTGTTGTTGCTGGAATGTATGGAAAGTCTAATATCAAAGGGTAC
AGAGCACTAATGTGAGGAGGACAATATTGACAGCAAGAAGTGTTGTTGCT
GGAATGTATGGAAAGTCTAATATCAAAGAGACTTTGATCATCAACACGAT
GCCTTTCGAAGAAGAATATTTGCTTCCAAATTGGAGTCATTGTTTACGTT
TGAAAGATCGGTTTGAGTTTCTACAAAAATACATGAAGTATCTACCAAGC
CAAGATGAAGTGCTTTATTTCAACCGACTCATTGAGAATACTGATCAAGA
AAATATGATTCAATTTGTTCCTCTTCATGACATAATGGTGTGCCGAGAGA
GACTTTGATCATCAACACGATGCCTTTCGAAGAAGAATATTTGCTTCCAA
ATTGGAGTCATTGTTTACGTTTGAAAGATCGGTTTGAGTTTCTACAAAAA
TACATGAAGTATCTACCAAGCCAAGATGAAGTGCTTTATTTCAACCGACT
CATTGAGAATACTGATCAAGAAAATATGATTCAATTTGTTCCTCTTCATG
ACATAATGGTGTGCCGAGAGGCACATGGCTTCGAAGTTCCCAAAGAACTG
AAGAAAGTAGAAAAACATTTGGTCAGACGTGCATCAGAAAACCAAGCCCG
TATTCTTGGTGGAAAAGAGCACATGGCTTCGAAGTTCCCAAAGAACTGAA
GAAAGTAGAAAAACATTTGGTCAGACGTGCATCAGAAAACCAAGCCCGTA
TTCTTGGTGGAAAAGATATTGATGCATTGAGAATGTCATGTGGGAATTTA
CTCAATGAATTTTGTGAGGTCATGGAACAAGCAGTAAAAGACAATCATAT
TGATGCATTGAGAATGTCATGTGGGAATTTACTCAATGAATTTTGTGAGG
TCATGGAACAAGCAGTAAAAGACAATCACCCCTACAAGATGAACCTATAC
AGTGCGCATGACACTACATTGAATGCTCTACTCATGGCCTTTGGAAAATG
GGACCGTTATTCTTGGCCCAGATTTGCTTCTTATATTGCATTCGAACTTT
ACAAGCATAAAGAGCCCCTACAAGATGAACCTATACAGTGCGCATGACAC
TACATTGAATGCTCTACTCATGGCCTTTGGAAAATGGGACCGTTATTCTT
GGCCCAGATTTGCTTCTTATATTGCATTCGAACTTTACAAGCATAAAGAG
GACGATAAACATTACGTGAGAGTTGTATATAATAAAAAATCATTATTGTT
GGATCAAGAAACCAATGCTGAATATATTCCACTCGAAAGGACGATAAACA
TTACGTGAGAGTTGTATATAATAAAAAATCATTATTGTTGGATCAAGAAA
CCAATGCTGAATATATTCCACTCGAAAGGTTTTTCGAGTTGTTGAAGAAA
TATCGCGTGAAAGACTGGAAAACATATTGTCAGAGAAAATAGGTTTTTCG
AGTTGTTGAAGAAATATCGCGTGAAAGACTGGAAAACATATTGTCAGAGA
AAATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000348_pilon | genome | sc0000348_pilon:303615..308494 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 1174-1236:64 |
| Aaloc | 1084-1170:331 |
| Aaloc | 949-1083:1053 |
| Aaloc | 868-945:1519 |
| Aaloc | 769-864:1862 |
| Aaloc | 550-768:2509 |
| Aaloc | 466-546:4178 |
| Aaloc | 334-462:4881 |
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