XLOC_043865 (mRNA) -

Overview


Name	XLOC_043865
Unique Name	XLOC_043865
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000111_pilon:403570..406998-
coding sequence from alignment at sc0000111_pilon:403570..406998-

mRNA from alignment at sc0000111_pilon:403570..406998-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043865 ID=XLOC_043865|Name=XLOC_043865|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3429bp|location=Sequence derived from alignment at sc0000111_pilon:403570..406998- (Clytia hemisphaerica_ch_hm2_pilon)
TCAGGTTCCAAAGAGAAAAAAAAGAAGAAGAAAGACCGCAAGAAAAAGAA
TCGAAAGAACAAAGGCGGCAAACGAAAGAACAAGAAACGTAAAAATAAGA
ATAAGAAAAACAAAAAGAAGAAGAAGAAAACAACGACATCAACCCCGTTC
AAAACTCTAGTAAAATCGACAATAACCTCGCCAAAGACTACTACAACTAC
TACTTCAACCTCTACATCAACGAATCCAACAACAACATCAACAGCGACGA
CGACAACAACCACAACGACATTAACGAAGACAACACCTTTATTGACAACA
TCTACCAGGCCGACAACAACATCACGTACACCAACAATGGCGTTGCCTTC
ACCATCGACGACTCTGATAGAAAAGACACGAGCATTGATTAATACGATGG
CACCTGAAGTAACGACATCTTCGAAAGCATCGACAACAGTCACTATAGCT
ACTACAAAAACTACCATGCCAAGCAATATAATTTCAACTCTAAAGCCTGT
ATTCACGACATCTGCTTTGACATCAACAACATCAAAGTCGACAAAAGAAA
CTCTAGCAGCAACAACAACAACAGCCTCACAATCAGCCACAACATCACCT
TCACCTTCAACATCCACAACAGTTACAACACCATCTCCAGTTGTTGTCAA
GATTACTTCAAGAGAAGCAGGCAACACACTGACAACAGAAACGACACCAA
CACCTGCTACAGTTCAAAAGACTAAAGCAACCATAGTAACAATGACCACC
AACTTACCTGCTATTCTCAAAAGAGAAACTACACAAGATGCCAAATTTCC
AACTGCGATGGTATCAGTAGAAACCTCTACGGACCTTTACCGATCAATAA
TGACTAGCAGATCACCAAGCCAATCTACAAAGCCATCTACGAAACAAGGT
AGAACAACCAGAAAGACATCTGCAGAAATACCTCGACAAACCTCAACAGA
AGGGTCACCAGAAACAACACCAAATACTAACAAAGTTACGACGAAACCTT
TAGTTACCAAATTACTCGTGAAAAATAAATCACCGTCAAAGTCCGTAAGA
AAAACAACAATGGAGAATTCATCGCAGGCTTTAGTAGCTTCTTCTACTAT
TTCACCTAAGACAGACAATACCACACCCACACTTCGAGTAAAAGATGCAA
CGTCTGCGAAATCTTCTTTGAATTTACCGACAATATCAACAGTAGATTTA
TTGTCAAATGTTTTGACAAAAGAAGATTATACAACCTCTTCGAAAACTGG
CAACAATGTCTTCTCTGTACAATCAACAACTACACCTGTAGATGAAAAAA
CAGAAGCCTTGGTAGAAACTACGACTTTTATTCCAACGGAACTTCCAACT
GATACGATCTCATCCACGAGTAAGAAAGATGAATCAACTACACAGAAATC
AACTACAATCACATCTACTAAAACAACAGCGATAGAAGTTGAATCCAATG
GCGATTCTGCATTGACTACGCGGACAGCAATGGTAACTGAATCTCCAAAT
ACCACATCTCCGAAAGGAGTAGTTGATACAACAATATCGTCAATAACCGA
AGAAGAATCCCCCACACCTATAACAGATCCTACGACAACTACTGATATCG
CGAAATCTGCTCTGTCTTCTACCACAGAATCAACGACCGTTTTACCAACT
AAGCCGTCGGAAATCATATCTCCGGAAGACAAATCTACTGCCACCTTGTC
ATCTACAACTGAATTACCAATCGTAGGAGGAAACTCAATCCTCTCCACAT
CTATAGAAGACTCTACGACGACCACTACAATTTTGGCTACATCTTCAACG
TCAACAAAGTCAACGATCACAAGAGAAATAACACCTCCTGCGACATCTAC
TAAAGACACAACAAGCACAGCATCAAACCTCGACGACTGCACAACCCACG
ACACGGAGACAGAACCATCTCCGCCACCTCAATACTCAACAACTGAAGAC
AATGAAGGTGTTCCGACTGAAGAAGCTGATAAAGCCACCGAATTACCAAC
TAATAAAAGAAACGAATCTACCTCAACTTCTGAACCATTGTCAACTTCTA
ATACTCGAAACAATCCAACTCAAATTCTAATTACCTCAGATGAAGTCAGT
ACAACAACGCAATCTCAAGACATAGACACGAAAAACTCAACATTGGTAAC
ATTAAACACCTCAACCAAACCAACTAACATAGTCACTACACCATCGGATG
AATTCGAACAAAAAGACACTGAAAAGCCTACAACTTCCACGTTGGAACCT
GCAACATTCGAGACAAAACGCCAAGAGGAGTCAACGACCAAGCGTCCAAC
TTCGACACCGTCTGTTGGATTAAGTAATGAAACTGACTTGCTCAACAATG
CAACATTAGAATCACCAGATCCGATTACTACAACATCCAAACCATCCTCA
AAAAGCTTCTACATCACTGAGCCTGAATACGAAACAACTGAGACGAGACC
TGCAACTGAAACAACCAGCTCACAAAAGGTTTCAGCTACCCAAGAACCAC
TATCAGAACGCACTACGTCGCCATTATCAAGTCCAGTGGTGAACGTTGAA
AATACTTCATTACCAGCCTCCACAAGTGATACATCTGTCGGGTTGCGCAC
CACTGAGACTTTGTCAACCTCTAAATACGCCGGAAACTTCACCTCGAGTA
TGAATAAGATGCAGAATGACACTTTTAAACCGACGTCAGAGGCTAGAAAT
AATTTCAACATTATTCTTAAAAACAATGACTCGGAAAGCTCGAATGCAGC
GAGAGATACTAAAGGACCAATTACTCCAAGACCTACAGTGATCATCAATG
TTAATAAAACCTCATCTGACAATGATATTCATCCAAATGATAAAATTAAT
TCAACAGTGAGTGTCACACCCGTACAATCCATATATTCCCCTACCAACCA
TTCCCTCGTGTTCGACAATAAAACCATTACATTGAATCCCAACACCACAG
TTGCCACAAAAACTCAGAAGTCAAGTACCAAAGTCTTTCTGAACGTTACT
AAAGCTACAACGGAAGGCAATGTATTGACAATCTTCAACCTAGCAACAAC
CGGCGGGCCCAAGTCTGAAAGACCTGAGACACCTCTATTCAAAAATATCA
CACGAGGCGAAAAAGAAGAAAAATACTTCACACCTCCAAACCTACCAACA
ATACAGCCTAAATCTGAAAATTTCACTAAAGCCCAAAACACAGTAAGCAG
TACTGAAGAAACCGCCATTAAAAACGAACGCTTAGAACTCAAAACATTAA
GCTGCGATAATGGAATGATGAGAATAATATTAAGAACACAAAATGATGAG
AACAGTTTGAGACAGCATACTAAGAATATCACCTTAAGCGACACGAGTTG
CCAATTTTCAGTGCTTAACCAGCAAGAGATGATCTTGGAAACGGAGTATG
GAAGATGTGGTGCAATAGTCCATCAAACA

Coding sequence (CDS) from alignment at sc0000111_pilon:403570..406998-

>XLOC_043865 ID=XLOC_043865|Name=XLOC_043865|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=6858bp|location=Sequence derived from alignment at sc0000111_pilon:403570..406998- (Clytia hemisphaerica_ch_hm2_pilon)
TCAGGTTCCAAAGAGAAAAAAAAGAAGAAGAAAGACCGCAAGAAAAAGAA
TCGAAAGAACAAAGGCGGCAAACGAAAGAACAAGAAACGTAAAAATAAGA
ATAAGAAAAACAAAAAGAAGAAGAAGAAAACAACGACATCAACCCCGTTC
AAAACTCTAGTAAAATCGACAATAACCTCGCCAAAGACTACTACAACTAC
TACTTCAACCTCTACATCAACGAATCCAACAACAACATCAACAGCGACGA
CGACAACAACCACAACGACATTAACGAAGACAACACCTTTATTGACAACA
TCTACCAGGCCGACAACAACATCACGTACACCAACAATGGCGTTGCCTTC
ACCATCGACGACTCTGATAGAAAAGACACGAGCATTGATTAATACGATGG
CACCTGAAGTAACGACATCTTCGAAAGCATCGACAACAGTCACTATAGCT
ACTACAAAAACTACCATGCCAAGCAATATAATTTCAACTCTAAAGCCTGT
ATTCACGACATCTGCTTTGACATCAACAACATCAAAGTCGACAAAAGAAA
CTCTAGCAGCAACAACAACAACAGCCTCACAATCAGCCACAACATCACCT
TCACCTTCAACATCCACAACAGTTACAACACCATCTCCAGTTGTTGTCAA
GATTACTTCAAGAGAAGCAGGCAACACACTGACAACAGAAACGACACCAA
CACCTGCTACAGTTCAAAAGACTAAAGCAACCATAGTAACAATGACCACC
AACTTACCTGCTATTCTCAAAAGAGAAACTACACAAGATGCCAAATTTCC
AACTGCGATGGTATCAGTAGAAACCTCTACGGACCTTTACCGATCAATAA
TGACTAGCAGATCACCAAGCCAATCTACAAAGCCATCTACGAAACAAGGT
AGAACAACCAGAAAGACATCTGCAGAAATACCTCGACAAACCTCAACAGA
AGGGTCACCAGAAACAACACCAAATACTAACAAAGTTACGACGAAACCTT
TAGTTACCAAATTACTCGTGAAAAATAAATCACCGTCAAAGTCCGTAAGA
AAAACAACAATGGAGAATTCATCGCAGGCTTTAGTAGCTTCTTCTACTAT
TTCACCTAAGACAGACAATACCACACCCACACTTCGAGTAAAAGATGCAA
CGTCTGCGAAATCTTCTTTGAATTTACCGACAATATCAACAGTAGATTTA
TTGTCAAATGTTTTGACAAAAGAAGATTATACAACCTCTTCGAAAACTGG
CAACAATGTCTTCTCTGTACAATCAACAACTACACCTGTAGATGAAAAAA
CAGAAGCCTTGGTAGAAACTACGACTTTTATTCCAACGGAACTTCCAACT
GATACGATCTCATCCACGAGTAAGAAAGATGAATCAACTACACAGAAATC
AACTACAATCACATCTACTAAAACAACAGCGATAGAAGTTGAATCCAATG
GCGATTCTGCATTGACTACGCGGACAGCAATGGTAACTGAATCTCCAAAT
ACCACATCTCCGAAAGGAGTAGTTGATACAACAATATCGTCAATAACCGA
AGAAGAATCCCCCACACCTATAACAGATCCTACGACAACTACTGATATCG
CGAAATCTGCTCTGTCTTCTACCACAGAATCAACGACCGTTTTACCAACT
AAGCCGTCGGAAATCATATCTCCGGAAGACAAATCTACTGCCACCTTGTC
ATCTACAACTGAATTACCAATCGTAGGAGGAAACTCAATCCTCTCCACAT
CTATAGAAGACTCTACGACGACCACTACAATTTTGGCTACATCTTCAACG
TCAACAAAGTCAACGATCACAAGAGAAATAACACCTCCTGCGACATCTAC
TAAAGACACAACAAGCACAGCATCAAACCTCGACGACTGCACAACCCACG
ACACGGAGACAGAACCATCTCCGCCACCTCAATACTCAACAACTGAAGAC
AATGAAGGTGTTCCGACTGAAGAAGCTGATAAAGCCACCGAATTACCAAC
TAATAAAAGAAACGAATCTACCTCAACTTCTGAACCATTGTCAACTTCTA
ATACTCGAAACAATCCAACTCAAATTCTAATTACCTCAGATGAAGTCAGT
ACAACAACGCAATCTCAAGACATAGACACGAAAAACTCAACATTGGTAAC
ATTAAACACCTCAACCAAACCAACTAACATAGTCACTACACCATCGGATG
AATTCGAACAAAAAGACACTGAAAAGCCTACAACTTCCACGTTGGAACCT
GCAACATTCGAGACAAAACGCCAAGAGGAGTCAACGACCAAGCGTCCAAC
TTCGACACCGTCTGTTGGATTAAGTAATGAAACTGACTTGCTCAACAATG
CAACATTAGAATCACCAGATCCGATTACTACAACATCCAAACCATCCTCA
AAAAGCTTCTACATCACTGAGCCTGAATACGAAACAACTGAGACGAGACC
TGCAACTGAAACAACCAGCTCACAAAAGGTTTCAGCTACCCAAGAACCAC
TATCAGAACGCACTACGTCGCCATTATCAAGTCCAGTGGTGAACGTTGAA
AATACTTCATTACCAGCCTCCACAAGTGATACATCTGTCGGGTTGCGCAC
CACTGAGACTTTGTCAACCTCTAAATACGCCGGAAACTTCACCTCGAGTA
TGAATAAGATGCAGAATGACACTTTTAAACCGACGTCAGAGGCTAGAAAT
AATTTCAACATTATTCTTAAAAACAATGACTCGGAAAGCTCGAATGCAGC
GAGAGATACTAAAGGACCAATTACTCCAAGACCTACAGTGATCATCAATG
TTAATAAAACCTCATCTGACAATGATATTCATCCAAATGATAAAATTAAT
TCAACAGTGAGTGTCACACCCGTACAATCCATATATTCCCCTACCAACCA
TTCCCTCGTGTTCGACAATAAAACCATTACATTGAATCCCAACACCACAG
TTGCCACAAAAACTCAGAAGTCAAGTACCAAAGTCTTTCTGAACGTTACT
AAAGCTACAACGGAAGGCAATGTATTGACAATCTTCAACCTAGCAACAAC
CGGCGGGCCCAAGTCTGAAAGACCTGAGACACCTCTATTCAAAAATATCA
CACGAGGCGAAAAAGAAGAAAAATACTTCACACCTCCAAACCTACCAACA
ATACAGCCTAAATCTGAAAATTTCACTAAAGCCCAAAACACAGTAAGCAG
TACTGAAGAAACCGCCATTAAAAACGAACGCTTAGAACTCAAAACATTAA
GCTGCGATAATGGAATGATGAGAATAATATTAAGAACACAAAATGATGAG
AACAGTTTGAGACAGCATACTAAGAATATCACCTTAAGCGACACGAGTTG
CCAATTTTCAGTGCTTAACCAGCAAGAGATGATCTTGGAAACGGAGTATG
GAAGATGTGGTGCAATAGTCCATCAAACATCAGGTTCCAAAGAGAAAAAA
AAGAAGAAGAAAGACCGCAAGAAAAAGAATCGAAAGAACAAAGGCGGCAA
ACGAAAGAACAAGAAACGTAAAAATAAGAATAAGAAAAACAAAAAGAAGA
AGAAGAAAACAACGACATCAACCCCGTTCAAAACTCTAGTAAAATCGACA
ATAACCTCGCCAAAGACTACTACAACTACTACTTCAACCTCTACATCAAC
GAATCCAACAACAACATCAACAGCGACGACGACAACAACCACAACGACAT
TAACGAAGACAACACCTTTATTGACAACATCTACCAGGCCGACAACAACA
TCACGTACACCAACAATGGCGTTGCCTTCACCATCGACGACTCTGATAGA
AAAGACACGAGCATTGATTAATACGATGGCACCTGAAGTAACGACATCTT
CGAAAGCATCGACAACAGTCACTATAGCTACTACAAAAACTACCATGCCA
AGCAATATAATTTCAACTCTAAAGCCTGTATTCACGACATCTGCTTTGAC
ATCAACAACATCAAAGTCGACAAAAGAAACTCTAGCAGCAACAACAACAA
CAGCCTCACAATCAGCCACAACATCACCTTCACCTTCAACATCCACAACA
GTTACAACACCATCTCCAGTTGTTGTCAAGATTACTTCAAGAGAAGCAGG
CAACACACTGACAACAGAAACGACACCAACACCTGCTACAGTTCAAAAGA
CTAAAGCAACCATAGTAACAATGACCACCAACTTACCTGCTATTCTCAAA
AGAGAAACTACACAAGATGCCAAATTTCCAACTGCGATGGTATCAGTAGA
AACCTCTACGGACCTTTACCGATCAATAATGACTAGCAGATCACCAAGCC
AATCTACAAAGCCATCTACGAAACAAGGTAGAACAACCAGAAAGACATCT
GCAGAAATACCTCGACAAACCTCAACAGAAGGGTCACCAGAAACAACACC
AAATACTAACAAAGTTACGACGAAACCTTTAGTTACCAAATTACTCGTGA
AAAATAAATCACCGTCAAAGTCCGTAAGAAAAACAACAATGGAGAATTCA
TCGCAGGCTTTAGTAGCTTCTTCTACTATTTCACCTAAGACAGACAATAC
CACACCCACACTTCGAGTAAAAGATGCAACGTCTGCGAAATCTTCTTTGA
ATTTACCGACAATATCAACAGTAGATTTATTGTCAAATGTTTTGACAAAA
GAAGATTATACAACCTCTTCGAAAACTGGCAACAATGTCTTCTCTGTACA
ATCAACAACTACACCTGTAGATGAAAAAACAGAAGCCTTGGTAGAAACTA
CGACTTTTATTCCAACGGAACTTCCAACTGATACGATCTCATCCACGAGT
AAGAAAGATGAATCAACTACACAGAAATCAACTACAATCACATCTACTAA
AACAACAGCGATAGAAGTTGAATCCAATGGCGATTCTGCATTGACTACGC
GGACAGCAATGGTAACTGAATCTCCAAATACCACATCTCCGAAAGGAGTA
GTTGATACAACAATATCGTCAATAACCGAAGAAGAATCCCCCACACCTAT
AACAGATCCTACGACAACTACTGATATCGCGAAATCTGCTCTGTCTTCTA
CCACAGAATCAACGACCGTTTTACCAACTAAGCCGTCGGAAATCATATCT
CCGGAAGACAAATCTACTGCCACCTTGTCATCTACAACTGAATTACCAAT
CGTAGGAGGAAACTCAATCCTCTCCACATCTATAGAAGACTCTACGACGA
CCACTACAATTTTGGCTACATCTTCAACGTCAACAAAGTCAACGATCACA
AGAGAAATAACACCTCCTGCGACATCTACTAAAGACACAACAAGCACAGC
ATCAAACCTCGACGACTGCACAACCCACGACACGGAGACAGAACCATCTC
CGCCACCTCAATACTCAACAACTGAAGACAATGAAGGTGTTCCGACTGAA
GAAGCTGATAAAGCCACCGAATTACCAACTAATAAAAGAAACGAATCTAC
CTCAACTTCTGAACCATTGTCAACTTCTAATACTCGAAACAATCCAACTC
AAATTCTAATTACCTCAGATGAAGTCAGTACAACAACGCAATCTCAAGAC
ATAGACACGAAAAACTCAACATTGGTAACATTAAACACCTCAACCAAACC
AACTAACATAGTCACTACACCATCGGATGAATTCGAACAAAAAGACACTG
AAAAGCCTACAACTTCCACGTTGGAACCTGCAACATTCGAGACAAAACGC
CAAGAGGAGTCAACGACCAAGCGTCCAACTTCGACACCGTCTGTTGGATT
AAGTAATGAAACTGACTTGCTCAACAATGCAACATTAGAATCACCAGATC
CGATTACTACAACATCCAAACCATCCTCAAAAAGCTTCTACATCACTGAG
CCTGAATACGAAACAACTGAGACGAGACCTGCAACTGAAACAACCAGCTC
ACAAAAGGTTTCAGCTACCCAAGAACCACTATCAGAACGCACTACGTCGC
CATTATCAAGTCCAGTGGTGAACGTTGAAAATACTTCATTACCAGCCTCC
ACAAGTGATACATCTGTCGGGTTGCGCACCACTGAGACTTTGTCAACCTC
TAAATACGCCGGAAACTTCACCTCGAGTATGAATAAGATGCAGAATGACA
CTTTTAAACCGACGTCAGAGGCTAGAAATAATTTCAACATTATTCTTAAA
AACAATGACTCGGAAAGCTCGAATGCAGCGAGAGATACTAAAGGACCAAT
TACTCCAAGACCTACAGTGATCATCAATGTTAATAAAACCTCATCTGACA
ATGATATTCATCCAAATGATAAAATTAATTCAACAGTGAGTGTCACACCC
GTACAATCCATATATTCCCCTACCAACCATTCCCTCGTGTTCGACAATAA
AACCATTACATTGAATCCCAACACCACAGTTGCCACAAAAACTCAGAAGT
CAAGTACCAAAGTCTTTCTGAACGTTACTAAAGCTACAACGGAAGGCAAT
GTATTGACAATCTTCAACCTAGCAACAACCGGCGGGCCCAAGTCTGAAAG
ACCTGAGACACCTCTATTCAAAAATATCACACGAGGCGAAAAAGAAGAAA
AATACTTCACACCTCCAAACCTACCAACAATACAGCCTAAATCTGAAAAT
TTCACTAAAGCCCAAAACACAGTAAGCAGTACTGAAGAAACCGCCATTAA
AAACGAACGCTTAGAACTCAAAACATTAAGCTGCGATAATGGAATGATGA
GAATAATATTAAGAACACAAAATGATGAGAACAGTTTGAGACAGCATACT
AAGAATATCACCTTAAGCGACACGAGTTGCCAATTTTCAGTGCTTAACCA
GCAAGAGATGATCTTGGAAACGGAGTATGGAAGATGTGGTGCAATAGTCC
ATCAAACA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043865	XLOC_043865-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000111_pilon	genome	sc0000111_pilon:403570..406998 -

Properties


Property Name	Value
Aaloc	1-3429:3430

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XLOC_043865 (mRNA) -