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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000141_pilon:559979..564725- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043838 ID=XLOC_043838|Name=XLOC_043838|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4747bp|location=Sequence derived from alignment at sc0000141_pilon:559979..564725- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAAGAAAGCTTATTCCGTGTTTTTGTTGGTGGTCTTGCCCCTGA
AGTCAAGGAAGAGGAACTAAGGTAAAAAGATTATGCTTTGTTATATCTTT
TAACGAATTTAAGGAGAGTTGAGTCATGGCCTCAAAAGATCTATTTCAAT
ACGCTGTTCCAATGAATTTCCATACAGGAGATACAGGTGGGTGGACGAAC
CTTCTCAAGTGAAAACAAATTTCTTGGAAAAGTGTAGATACCCCCTGAAA
AATGGCAAAATTTGCAAAAGAACCCTTGGAAAAAATTATTTTCATCTCTT
ATAGTGAGGGTTTTTCCCCTGGAAAAATGAGAAAACACTTCTTACACCCC
CTGGAAATTCTTCTCGGATTACCCCCCCCCTGTATGGTCATAAAATGGAA
TGGCCCAATCTTTGCACGGGACATAGATTCTCTCATCTGACTCAGAATCT
TACTCAGTACGTAAAAACAATGAAAGTTTCATATTGTGAACATGAACTTT
GTATCATACTTTCAGAGATCGATTCAAGAGCTTTGGTACGACGTCAGATG
TATGTTTGTTTCAGAAAAAGACTTCAGATGGTATGACGTTTAAAAGCTTT
CAAAGGATAATCAAACAAATGGATTTATATTAAAGAATCTCAAATCATCT
GTTGTTCCTTATTAAACATTAGATACTACCAATTTTCTGGCATCTCCATT
TATGTTGCAAATGGTTTCCCTAAAGTGCCAATCATTGTAGTGGGTGGTTG
TACTTGATGGGGAATCATTAGTGATAACAGTACTTTACTTTTGGGTTAAT
TTGTTTTCTGAAAATTGCAAAACTTAAACCGTAGCTTATCCTACAATAAG
AAACGTATAAGAAAGGCATATGATCTTTAAAACAACTTCATGTTTTGTCA
TTCATTTACTTAAATTTTGAGATGCAAAACTTTGCAAGCTTCGCCTTCTT
TCGAGATTACTTTATTCACTACCTCAAATTGTTCATATATTTTTTCTTTT
CTTTTTTTCAGGGGTAATCTCAAAGACATTTGGTTATGTTAACCTCACCA
CGACTGAGCAACAACTCAGGAAATGTATGTAAAGATTTGAAAGCGATTGT
AATTTTTTGAGATTTGTTTCGTGTGAGAATTGTTTCATTCGTCTTGTATT
TGCTTCCATTGAGCTCTTTCGAATAGTTTCGCACACTGTATTCAGGGACT
CTAGGCTGCCGTTTTACATGAGAAGAGTGGTCTTTTTTTTATCTTTTATA
TACTTTTTGAATTAGGTTTCGCAATCTTTGGTGGCACGAAATGGAAAGGA
CACAGCCTGAAAGTGCAACTGGCCAAAGACGATTTCATGAAAAGGTAACC
CTATCTTATGAAGTTTTATGAAAAAAGTTTAATGTAAGTAAAAAATGTAA
GTAATCGATATTATATAAGTCATAGTACTAAATTCAAGGAATGATATTAT
TGCGTATAATTGAATTTTCACAATTCGACCTAAAGTTGACCTAGAAACTT
TTCAGCAAACCAAGATTTACTAGGCTTCTTCGTTTCGAGTGTAAAACTCC
TAATGAGAATAAGACCTAAAATCCCGGAGGTTAAAAGAACTACAATTTCC
AATAATCATTTATTTATACACACTCATAGGTTACAAAAAGAATGGGAAAA
TCCTGAACCAGTTAAAATCTCTAAATCAAGAAAACGTAAACAGATCGATC
CTATCCGCAGCTACGAAGAATATATTGCTAAAAGTAAAAGCACAAAGAAA
GCCATTCCCGGTATCCCTTTGGAAGGTGAAAAGAACTGGGTCATCGGCAA
GTTTGGTCGACCGTTACCCATTGTCCATATCAATGGTAAAGGCTCTGGCA
GGAAGTTTTTGAAACACGATCCATCAAAGCATTGCCATTGCATCCGAAGA
ATAGCTACTGATGTGCCCGAGGACAGAATTGATGGATTGACTTGGGAATT
GGATGAATGCCAACATCTTCAAGATCGTATTATCAGAAATAAGAGCATAA
CCAAGAAAAAGGATATTGCGAACGGCGTTGTTGAGCTTGATGGTGTCGAT
GAGGAAAAAGAATCGCCTAAGAAAAAGAAGAAAAAGAAAAAAGCCAGTTT
GGAGAGTATGGAAGATGTGGTGAATGAAAACGAGAGAGATACTGCTTTAT
TAAAGACTAAAGATTTGAATGGAAATGATTCTGAGGAACTTTGTAATGGT
GCTGGAGAACTTGAAAATGACTTTGAAATAGCTTCTTGTGAGAATATTGA
AGATAAATCTGACAATGAATCAATGGAAATTTCTTCGAATATAAACAATA
TATCTGAGGATAAAGAAAGTGAGGAATCGTCTGAATCTGAAGACGAAGAA
GTGCTCGTAAACGGTACTCTCAAAAATATTGGCGATGAACCGGAAGATAA
CGGCGTTTCAATTTCCTCTGAATCTGAAGTCGACAGTGAAGACGAAGAAG
ATTCTCAATCAGACAGTGGAACGATTCCAGGTCAACCGACTTTCCATACA
ACTTCAATGATTGCTTCAACTCCATTTGTTGTTCCTTGCGTTAAGAAAAA
TCTACGTGAGAACCCGGGTGATAACATTGTAGCTACACCAAAGGTAGCTC
ACAATAACAGCAGTCTTGGTAAAAGCATTATCGAACAGTTGAAATCGAGA
TCAATGGCTGAACCATCAACAACAGGAACACCATTACCAGAATCTAAGGA
CTCGAATGTAGATAGTGGTTCTGAATCTGAAGGTGAAAGAACGAATAACT
TTTTCGACTTTGATATCAACGATATGAATAAAGGACCTAAATCCAATGGA
GGAGTTTCATCGAGTAATGAGTCTACCGATGACAGTGAAGGTGAGGAACC
CATCAATCTGTTTGATTTCGAATTCGAGAATCTAAAAGGAAAAAAAGGAA
CAGAGTTTCTTAGTAGTTTTGAATTGCGCTGGGAAAAAGAAGATGTGGGA
GAAGATTCAAGTGGGGAGAGTTCAAGTGAAGACTCTGAAACGGATAGCGA
TAAGTCACCCAAGGCGTCGAAAGAGGGTGAAAAAGCTGTGCCAGAAGCAA
GTTCTGATGAACCCGTTGAGAGTGAATCTCCCCAAGAAGATAATGCGGAA
CCAGTCAAAAAGAAAAAGAAAAAATCGAGAAAAGATACCGAAGATGAACA
AGAAGAAATATCTGAAACAAAGTCTTCTTCGAAAAAGAAGAAGAAAGAGA
AAGAATCGACATTGAGTTCGAATGATATAGATGAAAATTTGAAACTAAAC
CTTGAAATTGACGAATCCGCCACACAAGAAATGAAATCAAAAAAGAAAAA
GAAGAAAACCGAAAAAGAAAATGAAAATGAAACCGAAGAATCGACAGCTT
CTACGAAGAAAGAGAAACGCAAAAAGAAAAAAGAAAAATCCGCATGCGAG
TCACAGGTCAAACACCATAAACCGCAAGATTCCGAACAGTTACGACAAAA
ATCAGTCGAAGCTCATAACCAACGCACGCAACAGAATAAAGAGCTCATAC
AAAACGCACTTCGGGGATTGGACACGAAGGACTCGTCATCTGCGAACAAT
AAAATACGATTCAGCGACACGGACGACGATGATGACGAAGTCACCTTCCA
AAACTTGACGACAAATGAAGCATCGAGTAAAAATGATAGTGATGACAAAG
GAACGAAAACTAAATCTAACAAAGACGAGAAGAAGAGTGCACTTTGGGAT
GGTGATAGTGACGAGTCAGATGATGGAGGGACGATGACACGAACGAAACA
TAAAGATGAAAAGACAGTCGTGAGTTTTATTTCATTTTTGTCTTTCAGTA
TTTTTCGGTGTATTTTTGGAATTTCTTTTCGTGGATGTAAGGCTAATGAA
CGATTGATAAGTTTATTATCAACAGCCTAGAACTTTGGGACTATTGTTTC
ACTTTTTCTTGACCTTTCACTGAATTTCAAAGTTTTTTGTCACTTTAAAA
GTGGACATTTCTAGATCGAATCTTCAAGGAGAGATTGCCAAGTCAAAGGC
GTCAGTGGTTCGAGCCTTGCTCCTTCCCATGTTCCTTCCCATGTTCCGTT
CAGCTCATAGAAGGCCGAGCCGGCTGTGAAAACAATCGTAGGACTGTGTA
AAAGACCTAGATTACAGGGCTATCCACGTAAAATATCGCCATTATCTAGT
TCGCGGTTTGCCTTGTCTCTCACTCTTTGATCTGAGTCATATGTACACAA
TTCTTAGCTCGGTGATTTACATCTCTGAGTCCATTCCCTATTACAGGATT
TCCTTGGTGATGAAAACGATGAAGATGATGAAGATGAGGATGAAAACAGA
TTTTCAGTCAAACCACAATTTCAAGGAGAACACGGCAAAAAGGTTTGCAT
CTTGTTTCTCGTGATTTTTTTTGCAGCTTCAGTGCACCCGAAAGTTCGGT
GAAACATTGAGTTAGATCTTTCATGTTCAAGCCAGATGAGAGGGTACATT
TTCAAAAGCTTTCGGAATCGAATTAGGATCATTTTTCAACTTTTAAAGTT
TTTATCAATCTTATAAACATTTTCGATTTTACGAGATTTTTTCCACTTGA
CCTTTTGTCCAACATGTCTTCCATCCCATATTGGGTTTGAATTAGTGGAT
ATTGGTATAAAAACTTTCCTTCATTTCCTTCATCAATTATAGCTTTTCAA
AATGCAAATGCATTATGGTGGTGATGATCGTTTCCGGATGGACGAACGGT
TTGCCGAAGATGACAACGGCGGCGATACTGATTCAGAAGATGAAGGC Coding sequence (CDS) from alignment at sc0000141_pilon:559979..564725- >XLOC_043838 ID=XLOC_043838|Name=XLOC_043838|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=5238bp|location=Sequence derived from alignment at sc0000141_pilon:559979..564725- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAAAGAAGAAAGCTTATTCCGTGTTTTTGTTGGTGGTCTTGCCCCTGA
AGTCAAGGAAGAGGAACTAAGATGAAAGAAGAAAGCTTATTCCGTGTTTT
TGTTGGTGGTCTTGCCCCTGAAGTCAAGGAAGAGGAACTAAGAGATCGAT
TCAAGAGCTTTGGTACGACGTCAGATGTATGTTTGTTTCAGAAAAAGACT
TCAGATGAGATCGATTCAAGAGCTTTGGTACGACGTCAGATGTATGTTTG
TTTCAGAAAAAGACTTCAGATGGGGTAATCTCAAAGACATTTGGTTATGT
TAACCTCACCACGACTGAGCAACAACTCAGGAAATGGGTAATCTCAAAGA
CATTTGGTTATGTTAACCTCACCACGACTGAGCAACAACTCAGGAAATGT
TTCGCAATCTTTGGTGGCACGAAATGGAAAGGACACAGCCTGAAAGTGCA
ACTGGCCAAAGACGATTTCATGAAAAGGTTTCGCAATCTTTGGTGGCACG
AAATGGAAAGGACACAGCCTGAAAGTGCAACTGGCCAAAGACGATTTCAT
GAAAAGGTTACAAAAAGAATGGGAAAATCCTGAACCAGTTAAAATCTCTA
AATCAAGAAAACGTAAACAGATCGATCCTATCCGCAGCTACGAAGAATAT
ATTGCTAAAAGTAAAAGCACAAAGAAAGCCATTCCCGGTATCCCTTTGGA
AGGTGAAAAGAACTGGGTCATCGGCAAGTTTGGTCGACCGTTACCCATTG
TCCATATCAATGGTAAAGGCTCTGGCAGGAAGTTTTTGAAACACGATCCA
TCAAAGCATTGCCATTGCATCCGAAGAATAGCTACTGATGTGCCCGAGGA
CAGAATTGATGGATTGACTTGGGAATTGGATGAATGCCAACATCTTCAAG
ATCGTATTATCAGAAATAAGAGCATAACCAAGAAAAAGGATATTGCGAAC
GGCGTTGTTGAGCTTGATGGTGTCGATGAGGAAAAAGAATCGCCTAAGAA
AAAGAAGAAAAAGAAAAAAGCCAGTTTGGAGAGTATGGAAGATGTGGTGA
ATGAAAACGAGAGAGATACTGCTTTATTAAAGACTAAAGATTTGAATGGA
AATGATTCTGAGGAACTTTGTAATGGTGCTGGAGAACTTGAAAATGACTT
TGAAATAGCTTCTTGTGAGAATATTGAAGATAAATCTGACAATGAATCAA
TGGAAATTTCTTCGAATATAAACAATATATCTGAGGATAAAGAAAGTGAG
GAATCGTCTGAATCTGAAGACGAAGAAGTGCTCGTAAACGGTACTCTCAA
AAATATTGGCGATGAACCGGAAGATAACGGCGTTTCAATTTCCTCTGAAT
CTGAAGTCGACAGTGAAGACGAAGAAGATTCTCAATCAGACAGTGGAACG
ATTCCAGGTCAACCGACTTTCCATACAACTTCAATGATTGCTTCAACTCC
ATTTGTTGTTCCTTGCGTTAAGAAAAATCTACGTGAGAACCCGGGTGATA
ACATTGTAGCTACACCAAAGGTAGCTCACAATAACAGCAGTCTTGGTAAA
AGCATTATCGAACAGTTGAAATCGAGATCAATGGCTGAACCATCAACAAC
AGGAACACCATTACCAGAATCTAAGGACTCGAATGTAGATAGTGGTTCTG
AATCTGAAGGTGAAAGAACGAATAACTTTTTCGACTTTGATATCAACGAT
ATGAATAAAGGACCTAAATCCAATGGAGGAGTTTCATCGAGTAATGAGTC
TACCGATGACAGTGAAGGTGAGGAACCCATCAATCTGTTTGATTTCGAAT
TCGAGAATCTAAAAGGAAAAAAAGGAACAGAGTTTCTTAGTAGTTTTGAA
TTGCGCTGGGAAAAAGAAGATGTGGGAGAAGATTCAAGTGGGGAGAGTTC
AAGTGAAGACTCTGAAACGGATAGCGATAAGTCACCCAAGGCGTCGAAAG
AGGGTGAAAAAGCTGTGCCAGAAGCAAGTTCTGATGAACCCGTTGAGAGT
GAATCTCCCCAAGAAGATAATGCGGAACCAGTCAAAAAGAAAAAGAAAAA
ATCGAGAAAAGATACCGAAGATGAACAAGAAGAAATATCTGAAACAAAGT
CTTCTTCGAAAAAGAAGAAGAAAGAGAAAGAATCGACATTGAGTTCGAAT
GATATAGATGAAAATTTGAAACTAAACCTTGAAATTGACGAATCCGCCAC
ACAAGAAATGAAATCAAAAAAGAAAAAGAAGAAAACCGAAAAAGAAAATG
AAAATGAAACCGAAGAATCGACAGCTTCTACGAAGAAAGAGAAACGCAAA
AAGAAAAAAGAAAAATCCGCATGCGAGTCACAGGTCAAACACCATAAACC
GCAAGATTCCGAACAGTTACGACAAAAATCAGTCGAAGCTCATAACCAAC
GCACGCAACAGAATAAAGAGCTCATACAAAACGCACTTCGGGGATTGGAC
ACGAAGGACTCGTCATCTGCGAACAATAAAATACGATTCAGCGACACGGA
CGACGATGATGACGAAGTCACCTTCCAAAACTTGACGACAAATGAAGCAT
CGAGTAAAAATGATAGTGATGACAAAGGAACGAAAACTAAATCTAACAAA
GACGAGAAGAAGAGTGCACTTTGGGATGGTGATAGTGACGAGTCAGATGA
TGGAGGGACGATGACACGAACGAAACATAAAGATGAAAAGACAGTCGTTA
CAAAAAGAATGGGAAAATCCTGAACCAGTTAAAATCTCTAAATCAAGAAA
ACGTAAACAGATCGATCCTATCCGCAGCTACGAAGAATATATTGCTAAAA
GTAAAAGCACAAAGAAAGCCATTCCCGGTATCCCTTTGGAAGGTGAAAAG
AACTGGGTCATCGGCAAGTTTGGTCGACCGTTACCCATTGTCCATATCAA
TGGTAAAGGCTCTGGCAGGAAGTTTTTGAAACACGATCCATCAAAGCATT
GCCATTGCATCCGAAGAATAGCTACTGATGTGCCCGAGGACAGAATTGAT
GGATTGACTTGGGAATTGGATGAATGCCAACATCTTCAAGATCGTATTAT
CAGAAATAAGAGCATAACCAAGAAAAAGGATATTGCGAACGGCGTTGTTG
AGCTTGATGGTGTCGATGAGGAAAAAGAATCGCCTAAGAAAAAGAAGAAA
AAGAAAAAAGCCAGTTTGGAGAGTATGGAAGATGTGGTGAATGAAAACGA
GAGAGATACTGCTTTATTAAAGACTAAAGATTTGAATGGAAATGATTCTG
AGGAACTTTGTAATGGTGCTGGAGAACTTGAAAATGACTTTGAAATAGCT
TCTTGTGAGAATATTGAAGATAAATCTGACAATGAATCAATGGAAATTTC
TTCGAATATAAACAATATATCTGAGGATAAAGAAAGTGAGGAATCGTCTG
AATCTGAAGACGAAGAAGTGCTCGTAAACGGTACTCTCAAAAATATTGGC
GATGAACCGGAAGATAACGGCGTTTCAATTTCCTCTGAATCTGAAGTCGA
CAGTGAAGACGAAGAAGATTCTCAATCAGACAGTGGAACGATTCCAGGTC
AACCGACTTTCCATACAACTTCAATGATTGCTTCAACTCCATTTGTTGTT
CCTTGCGTTAAGAAAAATCTACGTGAGAACCCGGGTGATAACATTGTAGC
TACACCAAAGGTAGCTCACAATAACAGCAGTCTTGGTAAAAGCATTATCG
AACAGTTGAAATCGAGATCAATGGCTGAACCATCAACAACAGGAACACCA
TTACCAGAATCTAAGGACTCGAATGTAGATAGTGGTTCTGAATCTGAAGG
TGAAAGAACGAATAACTTTTTCGACTTTGATATCAACGATATGAATAAAG
GACCTAAATCCAATGGAGGAGTTTCATCGAGTAATGAGTCTACCGATGAC
AGTGAAGGTGAGGAACCCATCAATCTGTTTGATTTCGAATTCGAGAATCT
AAAAGGAAAAAAAGGAACAGAGTTTCTTAGTAGTTTTGAATTGCGCTGGG
AAAAAGAAGATGTGGGAGAAGATTCAAGTGGGGAGAGTTCAAGTGAAGAC
TCTGAAACGGATAGCGATAAGTCACCCAAGGCGTCGAAAGAGGGTGAAAA
AGCTGTGCCAGAAGCAAGTTCTGATGAACCCGTTGAGAGTGAATCTCCCC
AAGAAGATAATGCGGAACCAGTCAAAAAGAAAAAGAAAAAATCGAGAAAA
GATACCGAAGATGAACAAGAAGAAATATCTGAAACAAAGTCTTCTTCGAA
AAAGAAGAAGAAAGAGAAAGAATCGACATTGAGTTCGAATGATATAGATG
AAAATTTGAAACTAAACCTTGAAATTGACGAATCCGCCACACAAGAAATG
AAATCAAAAAAGAAAAAGAAGAAAACCGAAAAAGAAAATGAAAATGAAAC
CGAAGAATCGACAGCTTCTACGAAGAAAGAGAAACGCAAAAAGAAAAAAG
AAAAATCCGCATGCGAGTCACAGGTCAAACACCATAAACCGCAAGATTCC
GAACAGTTACGACAAAAATCAGTCGAAGCTCATAACCAACGCACGCAACA
GAATAAAGAGCTCATACAAAACGCACTTCGGGGATTGGACACGAAGGACT
CGTCATCTGCGAACAATAAAATACGATTCAGCGACACGGACGACGATGAT
GACGAAGTCACCTTCCAAAACTTGACGACAAATGAAGCATCGAGTAAAAA
TGATAGTGATGACAAAGGAACGAAAACTAAATCTAACAAAGACGAGAAGA
AGAGTGCACTTTGGGATGGTGATAGTGACGAGTCAGATGATGGAGGGACG
ATGACACGAACGAAACATAAAGATGAAAAGACAGTCGATTTCCTTGGTGA
TGAAAACGATGAAGATGATGAAGATGAGGATGAAAACAGATTTTCAGTCA
AACCACAATTTCAAGGAGAACACGGCAAAAAGGATTTCCTTGGTGATGAA
AACGATGAAGATGATGAAGATGAGGATGAAAACAGATTTTCAGTCAAACC
ACAATTTCAAGGAGAACACGGCAAAAAGCTTTTCAAAATGCAAATGCATT
ATGGTGGTGATGATCGTTTCCGGATGGACGAACGGTTTGCCGAAGATGAC
AACGGCGGCGATACTGATTCAGAAGATGAAGGCCTTTTCAAAATGCAAAT
GCATTATGGTGGTGATGATCGTTTCCGGATGGACGAACGGTTTGCCGAAG
ATGACAACGGCGGCGATACTGATTCAGAAGATGAAGGC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141_pilon | genome | sc0000141_pilon:559979..564725 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 2524-2628:106 |
| Aaloc | 2428-2523:502 |
| Aaloc | 1477-2427:1930 |
| Aaloc | 280-1467:3118 |
| Aaloc | 202-276:3481 |
| Aaloc | 139-198:3735 |
| Aaloc | 73-135:4232 |
| Aaloc | 1-69:4748 |
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