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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000141_pilon:675162..678960+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043829 ID=XLOC_043829|Name=XLOC_043829|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3799bp|location=Sequence derived from alignment at sc0000141_pilon:675162..678960+ (Clytia hemisphaerica_ch_hm2_pilon)
gGTGACCTAAATTCAGAGATCACCACTAGGGCAAAACAAGAAATCAAAAC
TTACACAAGACTAGACCCTTGGAAGGTAGGCttttttttGAAAGGGAGAA
accagtttttttttcatattcggATATTGTCATAGAGAGTTGATTCATAG
AAGTTACACCGTGATTAACAATATTGTCACAATTAGAAATTAAACCCAAA
CTAGCGTCATgaatttgcataaaaaagttttcatcttgtattcacccccc
ccccaatgATTCGTTATGTAGTTTAGATGTTAAAAATTGTTGTTACTGGG
CTAACACTTCACCTAATTATTTTATCCCCCTTATGATTCTCAGTGCAAAT
TTTTAATCACTGTCTTTGTCGTTTTTTACAGGTCAAATATTTTGAACCAG
TTTACGGACAATCGTAAGTATAATAATCCTATTTGAAAAGTAGTATCCAA
TATTTGTTTAAGTTGGCTCTCCAAAACAAGTGGCCGTCGAAAAagtactt
gaaaaatatttgatccGATGATCCAAAAAAGCTTAAGTTATTCACTCCTC
TTTTTTATTCGGGCATTTCGGTCACTCAAAGATTATTGTGTCATAATTGC
AATAAAGTTATTATTATCCTCGTTTACCTGGTCATTGTTTATCACATACC
ACCTTTTAAGCTTTGTAAAgtgaaattcatttcattttcgaAGTCTACGA
AAAGTTTTACAGTTTCTTATTAGATCAGCGAGCACTGAGATTCTCACTTA
ACTTATCTATCATTTTTAACATTTATTAGCTGCGAAATTTATAgcaatga
attttattttgatgacCACCTTTACAGCTCTGTCAAAGAAGACATTCCAG
AAGATGAACGACCTCACGATAACATCAAACCGATACAATCTTCCTGGGTT
CCTTTCCTCAAATTCGCTGAAAATTCTACTGGTGAATACGAGAGATCATT
GTCCAAAATTCAGGTATTCATATATTCATATTAATGATAAGGATGTATTT
ACTTTGTGCTCAAAAACTCGACTTCTCTTTTGTGTTTTGGTGGCAGTTTA
ATAAGAGTCCTGCTTTGAAGGTGAGTGCTGGAGCCTCACCCAAAAGTCGG
TCCAGACTTTTTAGTAGAAGATGCATGCAAGTTTACTgttataaaaatag
attttgggGTAAATATATTTCCTTGAATTACAGGAAACTCAAACGTCGTA
AATTGCCTAGAAAGCACAATGGAAGCTCATTCATATTTAATAGCCtagaa
agtttcatttttcaggctGTCTTCCTCTGTAATCTCTGAATTTTGACCCA
TTATAGATAACTTTAACGCCAATTAAGCTTCTTGGTCTTTGCAGATCTCT
ACTCTATTTGGAATAGTTCCTTAATGCTGGGAAAAGTTTCATGGCCATAT
AAGATTAAAAAGATCTCAAGTGAAGCAAGGAATATATTGATATATCTACA
CATACGTTTTAACACTTCTGCCCAATTGAAAATAAAGCTATAGTTATGGT
TTGTCTAATGCTATCATTacgattttctaaaatcatggTTTAGATTAAGG
CTAGAATCGAGCTAAAATAGATTTTAATTGTTGCTTTTTTGATCGTACTT
TTTTCAGGCACAAGTgaaagaaacgagggagagagaagccagagagaaag
aagaagcggaccgccaacgaaaagaagaaCTCTCTCAGCGTTCAAACCTT
CTGTCGGCTCCCACTTCATCCTCGTCGTCCGCTACTCCCAACAAACTCAA
CAAAACGCCTTTCCGATGTGCCCCACTACGTCACCAATCGTCTCTAACAC
GGTCACCGCATGCTCGTTCGCCAATGACGACGCGGCCGCCCACCAACCGT
CTCTCATCAGTAGAATCGAGTAAAGAGAAAAGTAAACGGGCGTTAAAGCG
TGCACAATTATTGCAACGTAAGAAAATCTTCGATAAACAGTTAAAAGACG
CGAAAGCACGGATATTAGAGGACGCACGATCGAACAGTGTGATAAAAGAA
AATCGCAAACAATTTCTAACACGATCAGCTTCATCTTCATCAGAAACGGa
aaaaaaCTTAACCACTGTAACCTCGTCAAGTCCTTCAAAAATTCTACCAA
CCGCTATCAAGAAAGATAAAGATCTAACAAAACTTTGTATCGTATCGTCT
TCGTCTACAACGTCTCTATCATCGTCCTCTCCTTCCTCAACTAACATCAA
TACAACAAAACTCTTCTTTGACAACAACGACCACAATTAATCCTTTGTTG
CAAAAATTCATACACGACAGCGAAACAGCTGTTGCGGAATCATCGTCACA
ATATGTTGCGCAATCCTCTACAACAACAGAAACTACCTCGACAGACTTAA
TGTCAAATACAACGTCTACAACCCTAGCATTGGCGACTCCGAACAACACT
TTAACGACAACCAGTACGACTACTTGCAATCATAAGAAAACCGATACTAC
GATCATTAAAACAGCATCGAACAGTAAAATTATTCAAGGTGCCGCTAATT
TTGGAACGAATTCAAATGGTTCATGCCCTTGTAACGTCAAAGCTATGTTT
CTTTGTAAACGTTGTGGCTCAGCGTGGCACGGGGATTGTATAAATAGTGA
CAAAATTTGCATTTCTTGCTCATAGAGTTTATCCTGTTTGgtctgttatt
tctattttctagCACTGCTgtatttcaaattattatttttttcagatttt
gaaattctcttcaatctcttttatatatttttttcccagTCACCGTTTAT
TATTATAATAGTATATATAATAATTCATTCGTTTTTAAAAATCTCGTTGG
TTTTAGAATTGTTGATTTTAGTTCAACtcatacttttatttatttttgta
gaaaaatatttgttcaGATGTTTCTCTATCCTTCACCGAACTTGGTATAT
TTTTCCCGATAACGGTCTGAAAATGTTAGAGAATTATTCATGAGTctgaa
atcaaatattttaaCAGGAAGCCTTAAAATTCTTAAACCTTAAGGCTTAA
AGatcttaaaattttcctttaaaactcTTTGGTGTTATTAAAATACTACT
AAAATTATAATCTATACACGTGGACTCGAAATAGACTGTTAACGTGGTTA
AAGATACCGAAAATTATTataattctaaaaaatattatttaaagaCAAAC
TTTGAAACAAGCAAAATATGTATGGAATTATTTACTTGAAAGACAAACTA
TCATAGTGTTTAATCTTTTTCGGATAAAGAATTTATCTCCAAACCTTTTT
CAATATATCTACAATGTCTGGATCTTTTAGCTTTCACGTTGCTAATATTT
ACAAACTTTTGAGAGGTCGTGTTTAAATCAACCTTAAGCATTATACAGGA
AAGATAAGAGGAAACctcaaaagatttttctcaccatcaaatatttttaa
aatatctaaaacagcCGACTTTTCGGATAAAGTTTACTAATCTCAAAAGG
CCTAATACACAATGGGATATCAAAAATTAACTAAACGGAAAACTAAAAAC
TGATAGTTGAatattttgtgttaaaatttgaacagtataaaatttatgta
aacaaattttaatatttttgaaaacattttttaaggtATGGTAGGCTGGT
ATCAACAAAAAACGGATTTGAACGGCTTTATGTAAGACAAAGAATTGGGT
GTTAAAAGTTTATAGACCATAAAAAAGgtgaatattttttcttcgaattc
TTGTTTATGTTTCTACCTCTTAACTGACGTTATTTTCCTTTCCTTATCTC
AGAATATGGATGTGAGATGAAGCGGTCTCACGTGGAGAAAAATATTGTG Coding sequence (CDS) from alignment at sc0000141_pilon:675162..678960+ >XLOC_043829 ID=XLOC_043829|Name=XLOC_043829|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2342bp|location=Sequence derived from alignment at sc0000141_pilon:675162..678960+ (Clytia hemisphaerica_ch_hm2_pilon)
gGTGACCTAAATTCAGAGATCACCACTAGGGCAAAACAAGAAATCAAAAC
TTACACAAGACTAGACCCTTGGAAGgGTGACCTAAATTCAGAGATCACCA
CTAGGGCAAAACAAGAAATCAAAACTTACACAAGACTAGACCCTTGGAAG
GTCAAATATTTTGAACCAGTTTACGGACAATCGTCAAATATTTTGAACCA
GTTTACGGACAATCCTCTGTCAAAGAAGACATTCCAGAAGATGAACGACC
TCACGATAACATCAAACCGATACAATCTTCCTGGGTTCCTTTCCTCAAAT
TCGCTGAAAATTCTACTGGTGAATACGAGAGATCATTGTCCAAAATTCAG
CTCTGTCAAAGAAGACATTCCAGAAGATGAACGACCTCACGATAACATCA
AACCGATACAATCTTCCTGGGTTCCTTTCCTCAAATTCGCTGAAAATTCT
ACTGGTGAATACGAGAGATCATTGTCCAAAATTCAGGCACAAGTgaaaga
aacgagggagagagaagccagagagaaagaagaagcggaccgccaacgaa
aagaagaaCTCTCTCAGCGTTCAAACCTTCTGTCGGCTCCCACTTCATCC
TCGTCGTCCGCTACTCCCAACAAACTCAACAAAACGCCTTTCCGATGTGC
CCCACTACGTCACCAATCGTCTCTAACACGGTCACCGCATGCTCGTTCGC
CAATGACGACGCGGCCGCCCACCAACCGTCTCTCATCAGTAGAATCGAGT
AAAGAGAAAAGTAAACGGGCGTTAAAGCGTGCACAATTATTGCAACGTAA
GAAAATCTTCGATAAACAGTTAAAAGACGCGAAAGCACGGATATTAGAGG
ACGCACGATCGAACAGTGTGATAAAAGAAAATCGCAAACAATTTCTAACA
CGATCAGCTTCATCTTCATCAGAAACGGaaaaaaaCTTAACCACTGTAAC
CTCGTCAAGTCCTTCAAAAATTCTACCAACCGCTATCAAGAAAGATAAAG
ATCTAACAAAACTTTGTATCGTATCGTCTTCGTCTACAACGTCTCTATCA
TCGTCCTCTCCTTCCTCAACTAACATCAATACAACAAAACTCTTCTTTGA
CAACAACGACCACAATTAATCCTTTGTTGCAAAAATTCATACACGACAGC
GAAACAGCTGTTGCGGAATCATCGTCACAATATGTTGCGCAATCCTCTAC
AACAACAGAAACTACCTCGACAGACTTAATGTCAAATACAACGTCTACAA
CCCTAGCATTGGCGACTCCGAACAACACTTTAACGACAACCAGTACGACT
ACTTGCAATCATAAGAAAACCGATACTACGATCATTAAAACAGCATCGAA
CAGTAAAATTATTCAAGGCACAAGTgaaagaaacgagggagagagaagcc
agagagaaagaagaagcggaccgccaacgaaaagaagaaCTCTCTCAGCG
TTCAAACCTTCTGTCGGCTCCCACTTCATCCTCGTCGTCCGCTACTCCCA
ACAAACTCAACAAAACGCCTTTCCGATGTGCCCCACTACGTCACCAATCG
TCTCTAACACGGTCACCGCATGCTCGTTCGCCAATGACGACGCGGCCGCC
CACCAACCGTCTCTCATCAGTAGAATCGAGTAAAGAGAAAAGTAAACGGG
CGTTAAAGCGTGCACAATTATTGCAACGTAAGAAAATCTTCGATAAACAG
TTAAAAGACGCGAAAGCACGGATATTAGAGGACGCACGATCGAACAGTGT
GATAAAAGAAAATCGCAAACAATTTCTAACACGATCAGCTTCATCTTCAT
CAGAAACGGaaaaaaaCTTAACCACTGTAACCTCGTCAAGTCCTTCAAAA
ATTCTACCAACCGCTATCAAGAAAGATAAAGATCTAACAAAACTTTGTAT
CGTATCGTCTTCGTCTACAACGTCTCTATCATCGTCCTCTCCTTCCTCAA
CTAACATCAATACAACAAAACTCTTCTTTGACAACAACGACCACAATTAA
TCCTTTGTTGCAAAAATTCATACACGACAGCGAAACAGCTGTTGCGGAAT
CATCGTCACAATATGTTGCGCAATCCTCTACAACAACAGAAACTACCTCG
ACAGACTTAATGTCAAATACAACGTCTACAACCCTAGCATTGGCGACTCC
GAACAACACTTTAACGACAACCAGTACGACTACTTGCAATCATAAGAAAA
CCGATACTACGATCATTAAAACAGCATCGAACAGTAAAATTATTCAAGAA
TATGGATGTGAGATGAAGCGGTCTCACGTGGAGAAAAATATTGTGAATAT
GGATGTGAGATGAAGCGGTCTCACGTGGAGAAAAATATTGTG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000141_pilon | genome | sc0000141_pilon:675162..678960 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1768-1812:3755 |
| Aaloc | 1486-1764:2209 |
| Aaloc | 883-1482:1608 |
| Aaloc | 748-882:829 |
| Aaloc | 715-744:382 |
| Aaloc | 640-714:1 |
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