XLOC_043674 (mRNA) -

Overview


Name	XLOC_043674
Unique Name	XLOC_043674
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000660_pilon:36858..44067+
coding sequence from alignment at sc0000660_pilon:36858..44067+

mRNA from alignment at sc0000660_pilon:36858..44067+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043674 ID=XLOC_043674|Name=XLOC_043674|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7210bp|location=Sequence derived from alignment at sc0000660_pilon:36858..44067+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCCACAAGATGC
AACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCAGTCCATCAA
TGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGATGGCTATTCT
TGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATACAACACAACC
AAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAGAGGTTGTTC
GAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACTGACAATCAA
ATTACACTCCATTGGATTTGCAACGAAAGTCGACCACTCAAGGAATGGGT
TCGGAATCGGGTTGTGGAAATCCTACGCTTCACCAACAAGGACAGCTGGA
AGTACATCAAATCAACAGACATGATAGCTGACCTTGGTACAAGACGTAAT
CATCACTAGATCTGATCAAACCAGATTCACCTTGGTACAACGGATATGCA
TGGATGAGGAAACCATCATCAACGTTCCCCTCGCTGTCACCAGAAGACAT
CTCACTGGATCAATCTGAACTCCAACAAGCATCCAAAGAAGTACGTGCTG
CTCAAGTGCATCACATCTCATCCAATCAAGACCAGCTTCAGAGGAGGTAC
GTATTTTCTCCTATCTTATTGATCCAAACAAGCACAAATTCAGTACAATC
GTTCGTATTGGCGCTAGTCTTCAAATTCATCGATATCATCTTCGATCCAA
AAAGGAAACAATCTATTTCTTCTCGTACACGATCAAAATGTACAAACACT
TCACAAAAAGCTTTAGTTATTTCAGATTCATTGCTTCGACGAGCAGAGCA
ATATTTCTACAGGAAAGGAACATCAGAAGTCAAAGAGTTCGTATCATCAT
CAAAGTATTCAAATACCTCAATCGAAAAGGATAGAATTCTCACATACACA
GGACGAATTCTACCAACTGATTCTGTTACCATCATTGGGAAGGCTACACA
ACGAATGCTAGATCTTCAATCGACGTCATTCTGTGTCCCAATCTTGGAGA
AGTCATCACCAATCGCCTACAGCATCGTCAACGACATCCATTGGAACCAC
ATCACTGCTTCACATTCTGGTGTGGAGACCACTTGGAGATATGTTCTTCA
GAAAGTTTTCATCATCGAAGGAAGGAGCCTGGTCAAGTCAATTCGATCAA
CTTGTGAAAGGTGTCGATACCTTCTCAAGAAAACCATCGACGTATCAATG
GGACCAGTATCACCTGACAACCTGATGATTGCTCCAATCTTCTACGTATC
TCAAGTCGATTTGTGTGGTCCATTTGAATCATACTCGTATCACAACAAGA
GGGCCACTGTCAAGATCTGGTACGCCGTCTTCTGCTGTGCTACTACCACC
ACCATCAGCATCAAATGCATGGAGGATTACTCGACAAACGCATTCCTACA
AGCATTCACTCGACTATCGTGCGAAGTTGGGTATCCACGTCGACTGCTCA
CTGATGAGGGCAGCCAACTCGTCAAGGCTTGCGAAACActtcaaattgat
tttcaagACATCCAACGTCGTCTCTTCAAAGAATCCAATGTCGATTTCAA
CACTTGTCCAGTTGGAGGCCACAATATGAATGGTCTCGTAGAACGAAAAA
TTCGTGAAGTCAAGAAGTCCATCCAAAAATCAGTCTCCAATCAACGACTA
TCAATCATGCAATGGGAGACATTCGCATCTCGAGCAGCAAACAGCATCAA
TGATCTACCATTAGGCATTCGTGACTACGATGGAGACTTGCAATCATTGG
ATATCATCACACCAAATAGACTGAGACTTGGACGAAACAACGACAGAAGC
CCAACCGGTGAATTCAGATTGTCAGGAAATTCATCAAAGATCATTCTACA
AAATCAAGCAATTTTCGATTCTTGGTTCGAGCTATGGTTAACCTCACACG
TCCCAGGACTTATCGCCAAGCCAAAGTGGTTCAAATCAGACACCAGCTTA
AAGAAAGGTGACGTTGTTCTATTTACCAAGCAAGATTCACCGATACGTTC
AAATTACCAGTTTGGAATGGTCGAATCCGTTGAAATCGATCGAGACGAGA
AAGTTCGAAAAGTTAAGGTTCGTTATCAAAATGCTTCAGAGAATACTCAT
CGTTTTACATTTCGTTCGGTTCGAAATCTTGTGGTGATTCATCGTGTGGA
TGAAACCTCTATGATGTTGTACCTTTATAATGCTAACCAATTTGCCACCT
GTGGTGGGGCAGTGTAGGGTGAACTGCACcctaattCaattAgatttaat
tactttaacaaaacattcaaaatacaaaaagaactTAACGTAGgacaatt
atatttttattgcaTCGCAAATGACTTGTACATATTCCCTAGGCAATTAT
CGTAGGCAATTATCGCTagattatatcaattttttacaatttcaatTCAA
CTCAATCATTCAATTCTGAAACTTACACAAGAAGGATGTATGTGGAAGAT
GTTGAGATGCGTTTTTAGATACAAGTTTTAGAGTTCAATATTTCAAGTTC
AATCTTTGTCAATCATTTCATGTACCTGTATTCACTTGCCTTCAAATTGG
CATGTGGCTATCCGGTACgtttgcctctttgtttgcctttgttgtctttc
tttgtttgctttgtgcctccttttCATGCACATTTAGGTTGGGTCCGGTT
TAGGTCTGGACATTAGGCTAGGTCATTTTTAGGCATGTTTTTTGTTAGTC
AAATTTAAGTTCATTTATTGCATTcaattattgtcaataatcaatttctc
tagtttattttctaattgtaatttttcaatcaatttttcagtttgaacat
aatcAACCAGTTCCAAACGGAAGCTGATTCCAATCTTTGCTCAAATTCCC
CAACAAAGTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNCGCTATTCGATCTCAAGAAGAGTTTCATCTTAGACATCAATGATGAGC
TTGCAGCCAGAGACATCGAAAAGAGTCGCGATTTCAATCGTTCTCGACTA
AACATCAAAATCGAAAAGTTCTCCGGATACGACAGTAAGATCGATTTCTT
TACCTTCCGTACGAACTTTGAAAAGCTCCATCTGAAGACAACACCAAAGC
AATTCTTACCTGCGCTGTTAAAGAACAACTTCCTCACAGACCACGCCCTT
AACTTAGTTCGCAATCTTGATGACATCGACATCATATGGGAGAGATTAAA
AGGTGTCTATGGTAACCCAAAGATGATGCTATCCAAGAGGCTTCTTCAAC
TTCAAACATTGGACGTCAGCAAATCAACGAAACCTGAAAAAGCTATCGAC
AGTCTTACCAAAGTCATCAACGTGCTTCAAGATTTGATGAGATTAGCACA
AGAACACAACATTGAAGAGTACCTATACTATGGTGAAGGACTCAACACCA
TCTACCAGCTGATCGGTGATGTACAAACAACGAAATTCCTAGACACCATC
TGTACCGACGACCTCGAGCAACAAGAAATCTGGTCAAAACTCATATCCTT
CCTGGACCATCAGAAGAGGATTCATCAACAAAGACTTATGATCCAAGGAC
CAACACCAGATCCACCCAAGAGAGATCCTCCAAAGAAAGACTCACCACCA
TTCAGACGAGGTCCATCATCACACCACACTGATGGTCAACAGAATCGTCG
TCCACCTgatcaactcaactgcttcatATGTCAAGCCACAAATCATGTTG
CAACCAATGGACCACAAGGAAGCAAGATCGTCCAATACTTCGCATGTCCA
GTATTCGTCAACATGACTCCTATCGAACGTTTCAATGCACTCAAATCCAA
AGGACTCTGTTTCCAGTGCTTGTATCCTGGAGCCAAGTACGACCAAGGGA
AACATAAGGAGGGACGTTGCCAAAAGATCTTCTGCTGCAAAGATACTCTC
CATGACAAGTTTACTCACAAGAAACACGTGCTGGTTTGTGACGAACATAA
ATTTACCCAGGAGAACAAAGATCTGTTTGACTTCTACAAATCAAGATGCA
TCAGCAAGATCCAACAGTTAGAAGCCTTCACCAAAGACATGCGTCTCACC
TATCACTTCACCCCAGACGAACCAGAGCCCAATGATCATCAAGCCATCTA
CGTGTTGCAAACGATTGAAGTTGACCAACAGCAATTCACTTTGTTCTACG
ACAATGGATGCAAGAATTCTGTCATCAAGTTTGATGCAACCAAACGACTG
GGTAGCAATCGAGCCAAACAGATCATCTCAAGACCAATTCCAGTTGGTGG
CGTTGGAGGTGTCACAACACAATCAACACATGGAATCTATACCTTCTCGT
TACCACTGGCAACCAACAATGGTGCAGAGATGACTGGAGTTTGTCTCGAC
ACACTCACTGCGACCTTTCCCTTCTATCCATTGCAAGGAAAAGTGGAGAA
CGACATTCAGCACAGTTGGGAGGACTCTGGCCACGACATCAATCATCTTC
CAAGACTGCCACCAATGGTTGGAGGAGACGTCGACGTGATGATAGGTATA
CGTTATCTTCGTTTCTTTCCTAAATTCATCCACCAGTTACCTTCTGGCTT
GACCATCTACCAATCACAATTCAAGAACATCGATGGATCTTATGGGGTGA
TCGGTGGTCCCCATGAGGTATTCACAAGTATCGAAAATCATCATCACTCA
ACTTCGTCACAGTTTGTAGCAAGTCAACTGGAAGCAGCAAAGTTCGGGTT
CTACATTGATCCAGACATTCGATTACTTGGATCAGCTACCTTCAGTGAGG
TTCGACATGACTTGTATTTCACTAACAACCCAACTTACCAAATCAACAAC
GACGAATCTGAACCATCAACTTCATACATCACCAATCTTAATGAGAAGTT
CGAATCAGTTGGTACAGACCTTAACTATCGCTGTGTCAATTGTCGAAAGT
GTTTAACCTGTAAGAACCATTCTACAGAAGATTCCATTAGCATCCAAGAG
GAGGTCGAGCAAGACTTGATTAATCGCTCCATCACTATCGACCCATCCAA
TTGTTCATCGATTGCTAATCTTCCACTAATACACGACCCTCTGGTCAAAC
TGGCACCAAATCGAGACATTGCACTTCGCGTTTACATACAACAGCTTAAA
CGTTTGGAAAAGCATCAAGACGATAAGGACGACATCCTCATCTCAGAGAA
GAAACTGCAACACCTGGGATTCGTCGAATATGTCAAGAATTTGCCCACTG
ACATCCAAAAGCAACTATCAGAATCTCAGATCAAGAATTTCATACCATGG
AGGGCTGTATGGAAAGGCTCTTCTATATCGACACCGTGCAGAATTGTCTT
TGACGCTTCCATGCCGACATCGACTGGATTTTCACTCAATGACGTTCTAG
CAAAAGGAAGGAACTCAATGAACAAGCTACTCGAAATTTTTCTGAGGTGG
AGAGGACATCGCATCGCATTTCATACTGACGTACAAAAGATGTACAATTC
CGTTAAGCTTAGAGAATCAGACTGGTGCCTTCAACGTTACCTATGGCAAG
AACACCTTGATCCAAGTCAACCACCAGAGGAGAAGGTCATCATGACACTG
ATATATGGTGTCAAATCATCCGGAAATCAAGCCGAAACAGCACTTCGAGA
AACCGTCAAAATACATCGCAAAGACGAACCAGAGGTCGCTAGAGTCATCA
CTGAGGACGTTTACGTCGATGATTGCCTGTCTGGGGGTGATCAAATCAGT
ACCATCAAACTTCTATGTCAATCAATCGATCAAATTCTATCGTATGGTGG
ATTCACATTGAAAGGATTCACAATATCTGGAGAAGAACCGAAAGACTCTC
TAACAGCCGATGGCACCACAATCTCAGTCGCTGGAATGAAGTGGCATCCA
AAGAATGACCTCATATCCTTCGACATCAACCTTGACTTCGCCAAGAAATA
TCGCGGTAAGAAACTTGGTGAATGCAAAGAAGTACCAAAACGACTCACCA
GAAGAATCTGTTCATCAAAGGCTGCCGAGATTTTCGACATGACAGGACTG
CTTACTCCTATCACAGCGACGTTCAAGCTGGACATTCACGATCTCGTTCA
ACGCAAATTAGCATGGGATGACGAGTTACCAGCCAACCTTCGTGACATAT
GGATCAATCATTTCGACCTCATGGAGGAGATCAAGACGATCACATATCAA
CGAGCCATTGTTCCACAAGATGCAACATCACTGAAGATCGACACCCTCGA
CTTTGCTGATGCCAGTCCATCAATGATCTGTTCAGCAATCTACGTTCGAT
TCCCAGTACCAGATGGCTATTCTTGTCAACTCATCTTTGCTCGATCAAAG
TTACTAAACGATACAACACAACCAAGAGGAGAGCTGGCAGCTGCAGTTCT
CAATGCCCACACAGGAGAGGTTGTTCGAAAAGCCTTCAAGCAAGATCACA
TTGCACACAAGTTCACTGACAATCAAATTACACTCCATTGGATTTGCAAC
GAAAGTCGAC

Coding sequence (CDS) from alignment at sc0000660_pilon:36858..44067+

>XLOC_043674 ID=XLOC_043674|Name=XLOC_043674|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=882bp|location=Sequence derived from alignment at sc0000660_pilon:36858..44067+ (Clytia hemisphaerica_ch_hm2_pilon)
GAGGAGATCAAGACGATCACATATCAACGAGCCATTGTTCCACAAGATGC
AACATCACTGAAGATCGACACCCTCGACTTTGCTGATGCCAGTCCATCAA
TGATCTGTTCAGCAATCTACGTTCGATTCCCAGTACCAGATGGCTATTCT
TGTCAACTCATCTTTGCTCGATCAAAGTTACTAAACGATACAACACAACC
AAGAGGAGAGCTGGCAGCTGCAGTTCTCAATGCCCACACAGAGGTTGTTC
GAAAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACTGACAATCAA
ATTACACTCCATTGGATTTGCAACGAGGAGATCAAGACGATCACATATCA
ACGAGCCATTGTTCCACAAGATGCAACATCACTGAAGATCGACACCCTCG
ACTTTGCTGATGCCAGTCCATCAATGATCTGTTCAGCAATCTACGTTCGA
TTCCCAGTACCAGATGGCTATTCTTGTCAACTCATCTTTGCTCGATCAAA
GTTACTAAACGATACAACACAACCAAGAGGAGAGCTGGCAGCTGCAGTTC
TCAATGCCCACACAGAGGTTGTTCGAAAAGCCTTCAAGCAAGATCACATT
GCACACAAGTTCACTGACAATCAAATTACACTCCATTGGATTTGCAACCA
GTTCTCAATGCCCACACAGGAGAGGTTGTTCGAAAAGCCTTCAAGCAAGA
TCACATTGCACACAAGTTCACTGACAATCAAATTACACTCCATTGGATTT
GCAACGAAAGTCGACCAGTTCTCAATGCCCACACAGGAGAGGTTGTTCGA
AAAGCCTTCAAGCAAGATCACATTGCACACAAGTTCACTGACAATCAAAT
TACACTCCATTGGATTTGCAACGAAAGTCGAC

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043674	XLOC_043674-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000660_pilon	genome	sc0000660_pilon:36858..44067 +

Properties


Property Name	Value
Aaloc	328-444:7094
Aaloc	244-327:241
Aaloc	1-240:1

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XLOC_043674 (mRNA) -