XLOC_043597 (mRNA) -

Overview
NameXLOC_043597
Unique NameXLOC_043597
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000188_pilon:28680..36301+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043597 ID=XLOC_043597|Name=XLOC_043597|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7622bp|location=Sequence derived from alignment at sc0000188_pilon:28680..36301+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGACGTTGAGTTCTCTTGAAGACAAGATGTCAAGTTTGGTATTCTTATT TATTCTTGTGGTTTTTACTTTAGATTTGTTGGAGGGTTCGCCTCCTAAAC ATGGTTACCAATATAAAGTGAAATCTTTAGGTTagttgaaacttcaaaaa actttctttaactCGGATGAAAAATCATAAAGGTACATATTATGCCTGGA ATCTCGCTagtacaccttttcgaccgttgtcgcgcggtcaggcgcgtgcc acttaattatatAATCACCCCCCTTAAACTcgacccaatccttttttgac acatttttctcttgtctataggtgcgaacaAAGAACttggacggttttag tgggataaagcggacacaaaaacgcccgcgcggcaattggcggctacggt caaaaaggtgttttcgaacttctattattaaAACTAATTCTCAGTCCCGA CCTCGAATTAGTGGGAGTTAACTGTAtaagataccttatcggggaaaact ttgtcggggaaaagtgacgaaattttgaacaacgaaattttggacaagtg acgaaaattttccccggccttaatgcgtttaccaactacccaccaagtga cgaatttttccccgacgaaaatttttactgacgaaaattttccccgatga agttttccccgataaggtaataatAATGCATCCAAAAACACATTAAAACA TATAATTTGTTAGGAAATTAGATCAAAATTATAAACGTGTAAACAGTGAC AGATCTGAGAGGAAACACTCCCTCTGGTATATAAAGTACTTGATTTAGCT AACTTTCGATGGCGATAGTAAACTTCTGTTGTCACGTTACCCTTCCTTAT CTTTGCTTGTCTTTGGAGCCTGTGAACACAATAACCATTCATTATACCTT GTGCGCcacaaaaaatttctctctttgaaactgattttttcgaaatctaa gaATTAACAAACAGCAATTCCTATTCcatcagaaagaagaaagataaact taaattttgatgggtcatttattaaattcgattcattggatcaaaagtta tgctcaattgaataaaaaagttactttcagaaagtgcccgaaaacgttaa aaatcgacctatcaaatttttattttaaaattggcaatcgcaagaggctt tacatgattaagaacattttttcagtaattaaacacataaatgtCGAAAC TGATGgaacgaaagggtttaaaatgttcattaaaatcatttcaatttact tttaaagaaattttccacagatttttggttctagactggataaagtctat gtaaggcatttttttataaattttaccagattttttggcttttttcgacg aaacttctgccttttattgaaattcaatcttcctttatatGACAAACGGT Caattagacagctaattatcatttttaatgactgaaacgaaaatactgat gcatcatgttattatgcttctgtttaatttgaaaggtcgatttttaacgt ttttgagcactttcagaaagtaacctttttattcaatagagcataacttt cgatctaatgaaccgaatttaataaattacCCATCAAAAGTTAAGTTTAT ATATCTTCTTTCCAAttgaataggaatggttctttAAAATTTTTAGATTT CGGGAAAATTAGTTTTAAAGAGAGAAACCTTTTTGTGGCGCACCCGGTAG AACTAAAAAATAATGCCCAGAATGAGCAATTTGGGGAAAGATTCATAAAA TTGACTTGAGGTTGCGTGCTAGTACCTTATCGGCCAAAACTTAGTCGGCC CTAAAAGTGACTAAATTTTGGCTTGGTGACTAAAATCAGGGCCGACTAAA AATTATTGGGCCAAATTAAAAGATTATAATTTACTTATTTTCCAGTATTT TAAGTTTTCTTCTATTTTCCATCTACTTGTCAATTTAAAAATGGCCCAAA TTTTTAGTCGGTCTTAATTATTAGTCGGCCCTTAGTGACTAAATTTGACG AGGTGACTAAAATTAGGGCCGACTAATAATTAAGGCCGACTAAGGTTTGG CCGATAAGGTAGGGTTGAAGTGCCGAAAACCAAAAGAGAAAGGTTGAAGT CTTTTTCCGGGCGGAGCATGTGACTTTATACCTTTTACATTATTCTTCCA GATCAATGCATCAGTCATGACTTTTCACCTATTGGATGTATGAAACAAAG TGATCATGATCGAAAGAAATCGGACTTGGTAAGGAATTGATTGGATTGAT TGATCTTTAGTCTCTTCATGAAAtacacccttgtctcacagccccggtgg aagtttttcctcagtggggataaaaattcctatgtgaatggttttggagt gcaattttcgagcAATCAATTTCCTAGTAGGACCGAAATTCCAGGGTTTT TTCCCATTGGGCACGAAATCCTTGCTAAATTTTCCGGTGGGGCTGGGGTC GCAGCGGGTCTGTGAAACATGTAGCTCTTTGTTTATCCAGCGTTTATCGT TTATTTATCGTAATTATATCATGTTTCTGTGAAAACCAAACGAATAAAGC GTAttgatgatatgcaccattgtaatgtcttccacggatccAACAACTGA Tttggttgaaagtgatgtattgactgattttacgtcacttacaaccaatc atcTGTGAGGTTTATTGTGTTATATGTCGAATATAATAGAGATGAAAACA GTGTAACTGggttaatgaaaataaaatgtgaagTTGGTACTTATAGGTGC TTTGTATATGAGTGGACAAAGACTGACATAACAGAAAAAGAATacatctc ttcttttttttagatCCTTACAGGGCGTGACCCACACAGTCCTTCATACA ATGACAAAGAACACGCCCATGTTAATGATGGGTTATGGACTGATTACGAT GAATGGTTACCAAATTTTATTTGTCAGTaagtatacacgctttttttata agaatatactttataagaatgtccatgataaaaatagccaaaagattaag aatattccaagaatatcaccattatggaatttggcaactgaagaTTAGAA TGTAATTTTTAGAGCGTTTTCAGTTATAAATTACTAATTATCCCCAAGTT AGTCTCACTCCTTTTATAAAAGTGCCagtttatgcttgagacgtatgttt caaatgttaaatctagtttgaattagggtcttaacctaagaatgctgtaa gtatagtttaggatgattttcccccaAAAGTTAAGAATCATGAAATGAag aaacaccattcttataaaaaaagcttgtgtTCGTTTCTTTATAGGGAACA CGCTTATAAgaaacttgaggctgaaaatgattcAAAAGATAAGGAACTga tcaggctgagaataagaaaacaagttaaggAACAGAGAGTTGAGCTTGAA CATGCACACTATTGCCTAGgcctaaacaaaaagatgacaaaatattGACG AAACAACATTCAATAAACGTCTTCTCCTGTACTGTAGTCCATTGTCATAC CTATATATAAGTTACATACTTAGTAAATCCCATATTAGCAGCGAAGTAAA TAAGGAACTTGATAAGgaaatttgaggctgaaattctctgcaAAAATAAG AAACTCAAGGCTAGGAGctaagttaaggttccttacaaaaaaagcgtgta ttttatGACGTAAGTATCACGAGAGGTTTTCCAGTGTAAAATTTGCAGAC TCTATTACATTCTACTGAAAATACagtagtctccataactcgaccaCGCG CGGAGaacaaagattttttcgaattatGGAAGAATTATGGAGTTATggag taataaaaaaaaactcttgaaGTTGAATaatcttttgaaattgataaact cgttttcttttgtttagatGTGCAAACGAGCTTTACCAGAAATATCCGAA CAGTCAATCTCATATCATTGGCATAGGTTACTATGGTAAGTCCAAATCCC GCTTCATTAGACCACACCCAAAGGTTAGTGGAAATTTTTTACCCCCtccc ctgattttcaaaaaattaacctGGTAACCACCGCCTGTATGTAGATAAAA TGGAATGAACCATTAGATTCTGAACGttaatctttttatttcatttagcG GAATGCTGGTCGATTTCAAAACAGAATTTTGAACGTCTCCTTAAAGAGAA AGGAGTAAAAGCATTTTCTCATCAATGTGTCAAAAccgattttaagaaat ttttcccTCTTCGACCGAAAATAGAAAAGTGTGGAAGTTTTAGTGGTAAA GATGACACCATGTTTGTTTACAAGGTTGCCAAGCAACAAGGTGAGCGCTt ttgtctgatttttttttctgaattttcataCCGTCATATCCTTAATTTAA TGTGACCTCTAATGAATGcagataaattattttgacaaaTTATGCTTAAA TCAACTAGAGTaaaaaaaTTCCAGTTTCCGTAAAACCGTAGGGACCGTAA GGACCctatttccgaaattccgtcgATATTTACGTCAAAccccccccTCT CCGTtcgaaaaaagggtcgattccACTCCTCCACCAACAGTGAACAGCGC TgtgttgaaaaattttattttcattatatcATTTTGTTACTTCAGATTCT TGCAAACAATTTTATGTTCAAAAAGGATGCAAGAAAATCGAGAACGATAC CACTGGCAAATCCCCCAAACCAAAAGGTTTACAAAAAGTGATTGTTCTTG ATAAGAATGATAAGAAATTGTTTTGTACATGTTCCAAAGAAGCCATTAAA TCAGGACATCGGTATTTCTCTGTCAATCGCCAAGGTAAGCTTTTTGTTGA CATCCCTTCTAGGTTGTCTGTATACAGACCCAGtcagtcggaaccactac atagaaatggcaactattgccttaacgggaaatatttcccgaacgggaag gtgaaagtaacccaaaaaggaaactgtttccagattgaaaatttcatcac ttttctgtttcccgttttggtcaagGGCTTTTCAttgttcccgaacggga agttgaattttgtaaacaaagcagatttttgtttcccgatcgagaagaag tttccaaatagggaagtttttaattgggaatggGGAAATTAGAATTAAGA ACGATTACCCGGTGAAAGGTATTTatttaccctcttttacaatagGCATC ATTTATTTACCTTCCACGACCATTTCCGGAGTGCGCAGAAGTCacattcc cgatcgggaaactggtTAACTTCCTGATTCGGAAACTCTAtccatttcgg gaagtttttcaccttcccgttcgggaaatatttcccgttaaggcaatagt tgccatttctatgtaATGGTTCCGACTGCAAGTATCTacgactaatttca aaattcattgcgataaacgtgagatacactctggtacagagtactcACTA GGCTGctcggcagattttttttccttctgaAACCTGAtgcagacctgatt tagcgaccgaagacctgaattaacgcTGCGCAAATCCCCTCTCCGATATG TTTTTGATATAAGGGGATGctaatcgtgtataaaattttcgtccgagagt taccccaaaATTAgggtaacctgtttcaattttcttaaaaacgtttagaa atccaatgattgtattaGCCTGctctagccattcaaatttttaattcaaa tttaaagatCTATCAAGTAactaatcaagctaatcaattttctaaaacta aaaacaaaGACGGGGGTCCCTCCCGGACAAGAATTTTATTCATGTCgcac atcccctatatcaaaacatatcagtgGGGATGCGTGCAACCTACCTTCTC ACAGACTGGTTGGGATCCCCGTCCAATGAAAGAAAtggctaaaaataaaa atatcgtTTTCAGTAGAAAACTATACTCCAAATATtgtcccgctgaaaat aattaatttaaCAAACCCTTACTTCAAAATATTGTGCATTTTTTCCATCt ccaatgaattttctgacttgaaaacaatggaattcaaatcacAAGCCATA AAGAAAAATCGTCGGAATATCTATCTTCTTCGAGTTTCAGTCCGCTATTT TTACCGCCCGACTGGCTAAAAAATCCTGCGGGGTCTATGCGAAGGGATTG TTTTTATGACCTTTTGTTCTTTGATTTCTTCTCTTATctaagactttttt tctttctcaccCCTCTCACTGATTATTTAAAATGACTGCTCTACTGGGGG AAGTAGATTTCTCTTCTAGCCTGGGAGATGCGGTCATaggtaaatatttt caaaacatgcatatctcaaaatattttccagtacagttgacgctctctaa tccgATCTTCAAGGGGAATTACCGATTTTCATCGAACAAGgaagcttatc gaataagggagcatcgtttatgagagtttcttaagGGAGCCtattgaata gtagaacgtcaaattagagagcgtcaactgtatttatttTTCACCTCTGC AATGTGTTTTTTCTTTCTCAGGTAAATGCTTTCTATGGGATAGTTCAGTC ATGGAATTGGAGCCTTCGGAGAAATGTTACGATAGTGCGTCaaaacaatg cccaaaatatcGATCCAGTTGTAAATCTTCGCCACATTGCAGTGGCCTCA CATCCTTGGACCATCAGATCTATGAAGCAGTACAAGGTATTGcatttttc ctttgtttgattttgcgATTATTATCTACCCCTCCCGTATCTCAGAACCC ATTTCAATCTCCTGTCAACTGGATAAAATTCAGCTACAGTGCAAGGTACC CATGCCACAGATTTGTGCAAAGCCCGAATGACTAGATAGAGTGCTTTAAG TTTTTCCAAGTAAAAAagaagtgaatatcgcaaaaagaATTGTTgccatt attttcgaaaatccacCAATTTTGGATTTAACGCAGGTTAAATCGTGGTT TAACtttatttgataagcgctaCATATAATTTTAATCCCTGGGTGACCGC CCtccgccaactgagtctactATATCATGTTCATAATGGCCGCTGTAACT GAAAGCTGAGaggataaaataatttttacctccctccctgcctgcagtta tggttgtaggcgatcctcGCTTATTTATGCTACTATTGTATTTAACGgaa caaattttccccaaacttattattcgaggattagccataaatTTACGCCA AAGCTATATCTACCGACTCACACTTATTTCTCAGCCGTCTGACTAATTGA TTGTTTTCTAACCCTGATCTAagtcataggcaaatggaaagttgaATTTC TGATttgtcaagcgctgaaattctattttaatgTCACGTGATTAGGTAGG ATTATTTACCCAATACATTCatgaataaatttattttacCATTACAGGTC CATTTGCATGTGaaaaaaaTCCATGTAAGAACAAAGGAGTATGCTCATCC AATCGACTTTTCTCTTTTAAATGTAAATGCCCGAAAGGTATTTCTGGTGA TCGTTGCCAGATAGGTATAAATTGTTTTTACACGACTcacactatttata agcatacagaAGCTTACATTTGCAAAAAGAATAAGCACAATGCTAAGTAT AGCTCGAAGCTTGGAACGTTcatcattttgactttttcactTGCCCAAAC CATAATAAGTGCTTCTTTTTGA

Coding sequence (CDS) from alignment at sc0000188_pilon:28680..36301+

>XLOC_043597 ID=XLOC_043597|Name=XLOC_043597|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2418bp|location=Sequence derived from alignment at sc0000188_pilon:28680..36301+ (Clytia hemisphaerica_ch_hm2_pilon)
TTGACGTTGAGTTCTCTTGAAGACAAGATGTCAAGTTTGGTATTCTTATT
TATTCTTGTGGTTTTTACTTTAGATTTGTTGGAGGGTTCGCCTCCTAAAC
ATGGTTACCAATATAAAGTGAAATCTTTAGTTGACGTTGAGTTCTCTTGA
AGACAAGATGTCAAGTTTGGTATTCTTATTTATTCTTGTGGTTTTTACTT
TAGATTTGTTGGAGGGTTCGCCTCCTAAACATGGTTACCAATATAAAGTG
AAATCTTTAGATCAATGCATCAGTCATGACTTTTCACCTATTGGATGTAT
GAAACAAAGTGATCATGATCGAAAGAAATCGGACTTGATCAATGCATCAG
TCATGACTTTTCACCTATTGGATGTATGAAACAAAGTGATCATGATCGAA
AGAAATCGGACTTGatCCTTACAGGGCGTGACCCACACAGTCCTTCATAC
AATGACAAAGAACACGCCCATGTTAATGATGGGTTATGGACTGATTACGA
TGAATGGTTACCAAATTTTATTTGTCAatCCTTACAGGGCGTGACCCACA
CAGTCCTTCATACAATGACAAAGAACACGCCCATGTTAATGATGGGTTAT
GGACTGATTACGATGAATGGTTACCAAATTTTATTTGTCAatGTGCAAAC
GAGCTTTACCAGAAATATCCGAACAGTCAATCTCATATCATTGGCATAGG
TTACTATGatGTGCAAACGAGCTTTACCAGAAATATCCGAACAGTCAATC
TCATATCATTGGCATAGGTTACTATGcGGAATGCTGGTCGATTTCAAAAC
AGAATTTTGAACGTCTCCTTAAAGAGAAAGGAGTAAAAGCATTTTCTCAT
CAATGTGTCAAAAccgattttaagaaatttttcccTCTTCGACCGAAAAT
AGAAAAGTGTGGAAGTTTTAGTGGTAAAGATGACACCATGTTTGTTTACA
AGGTTGCCAAGCAACAAGcGGAATGCTGGTCGATTTCAAAACAGAATTTT
GAACGTCTCCTTAAAGAGAAAGGAGTAAAAGCATTTTCTCATCAATGTGT
CAAAAccgattttaagaaatttttcccTCTTCGACCGAAAATAGAAAAGT
GTGGAAGTTTTAGTGGTAAAGATGACACCATGTTTGTTTACAAGGTTGCC
AAGCAACAAGATTCTTGCAAACAATTTTATGTTCAAAAAGGATGCAAGAA
AATCGAGAACGATACCACTGGCAAATCCCCCAAACCAAAAGGTTTACAAA
AAGTGATTGTTCTTGATAAGAATGATAAGAAATTGTTTTGTACATGTTCC
AAAGAAGCCATTAAATCAGGACATCGGTATTTCTCTGTCAATCGCCAAGA
TTCTTGCAAACAATTTTATGTTCAAAAAGGATGCAAGAAAATCGAGAACG
ATACCACTGGCAAATCCCCCAAACCAAAAGGTTTACAAAAAGTGATTGTT
CTTGATAAGAATGATAAGAAATTGTTTTGTACATGTTCCAAAGAAGCCAT
TAAATCAGGACATCGGTATTTCTCTGTCAATCGCCAAGGTAAATGCTTTC
TATGGGATAGTTCAGTCATGGAATTGGAGCCTTCGGAGAAATGTTACGAT
AGTGCGTCaaaacaatgcccaaaatatcGATCCAGTTGTAAATCTTCGCC
ACATTGCAGTGGCCTCACATCCTTGGACCATCAGATCTATGAAGCAGTAC
AAGGTAAATGCTTTCTATGGGATAGTTCAGTCATGGAATTGGAGCCTTCG
GAGAAATGTTACGATAGTGCGTCaaaacaatgcccaaaatatcGATCCAG
TTGTAAATCTTCGCCACATTGCAGTGGCCTCACATCCTTGGACCATCAGA
TCTATGAAGCAGTACAAGGTCCATTTGCATGTGaaaaaaaTCCATGTAAG
AACAAAGGAGTATGCTCATCCAATCGACTTTTCTCTTTTAAATGTAAATG
CCCGAAAGGTATTTCTGGTGATCGTTGCCAGATAGGTATAAATTGTTTTT
ACACGACTcacactatttataagcatacagaAGCTTACATTTGCAAAAAG
AATAAGCACAATGCTAAGTATAGCTCGAAGCTTGGAACGTTcatcatttt
gactttttcactTGCCCAAACCATAATAAGTGCTTCTTTTTGAGTCCATT
TGCATGTGaaaaaaaTCCATGTAAGAACAAAGGAGTATGCTCATCCAATC
GACTTTTCTCTTTTAAATGTAAATGCCCGAAAGGTATTTCTGGTGATCGT
TGCCAGATAGGTATAAATTGTTTTTACACGACTcacactatttataagca
tacagaAGCTTACATTTGCAAAAAGAATAAGCACAATGCTAAGTATAGCT
CGAAGCTTGGAACGTTcatcattttgactttttcactTGCCCAAACCATA
ATAAGTGCTTCTTTTTGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043597XLOC_043597-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000188_pilongenomesc0000188_pilon:28680..36301 +
Properties
Property NameValue
Aaloc937-1209:7350
Aaloc772-933:6474
Aaloc583-768:4598
Aaloc391-579:4101
Aaloc322-387:3869
Aaloc208-318:2814
Aaloc133-207:2154
Aaloc1-129:1