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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000188_pilon:1813..10406+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043595 ID=XLOC_043595|Name=XLOC_043595|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8594bp|location=Sequence derived from alignment at sc0000188_pilon:1813..10406+ (Clytia hemisphaerica_ch_hm2_pilon)
tttttaatttttaattcagGAACAACCACAAATCATCAAGCCTTTGTCAC
TTTCAAGCCTGGAGCGTTTTACCCTGGATTACCAGTTCAACCGATATTGT
TGAAATTCAAAGACAAATTGGTAATAAAAACAATagagtagagtctcttt
aacttgaacctccataattcgaatatctctttaactcgaacaagttttct
cgtcccttcagttaacaatgcctgaTAAACTttacttcataactcgaaat
taccttaactcgaacaaacttAAGTTCTCCCCCCTCgacttcgagttatg
gagtctCAACTGTATTCTTATATTTCTTAGAGACACCGCGGTAGGTGTTT
CAGGAAAAAGGGTACTAGAGGGAAGGATaccttttttatttctattaGTT
TCCGGTTGAGAAAgtctcttcaaaaaaaattggaaaatttttataaattt
tatattttctgtCCCATTCAAGGTTAATTTTGTGTAAGTTCtggcaaaaa
aaatgtaaaatcccGGAGAATCTCCTACAGTTTTATATTTACATAAGAAA
GTGTCGTCTATTCTTCTCATGGTGTAAATACTTttatcggattaactttc
gcgagattaaatttcgcgatttcgcgaatttttaccattttcgcgaaatt
aaaactcgccaAAACAcgtgagattcctgactcgcgaaattaaatccacc
acaaaattttttaaatcacatTTTCGGCGGAGAAACCAATCCAAAGTCTC
Cttttgtggcaaaaaatggctattttttagccgttttcaggcttattcgc
gaaattaaatccacgcgaaatttttcaaaacgcgaaatttaatccgatta
aagtagaaAAAACTTAAGTCAACTATGATCTAAATTTACCTTTTATAGAT
AAGGATTATATTCAAAATCTTATGAACCTACTTCTTAATATCTTCCCTAT
AGGATTATGCATCATGGACTTGGATGGGACCAAGCACGTAAGTATATTAT
CCTCATTATCGTTAGAAAACTCATCTGTCAAAAAGTGCGTCGGTCATAAA
TATTCGTCGGCAAAAGACTTTACCACCAATTaatttttcgtcactttttg
cgAATAAATTTCTTctcaaacgtttttttttaaatgaatttccaaatttt
ccttGCATTTAATGTAACATTCGAATTCAAAAATGATACCTACTTAGTAA
ATTGCTACTAAACATAAAGACAGGTTAATGATATTTAAATTGTGGTTTGA
CGAATCGCTAGAAAGAAACGCCGAGATTGTAATTATTAAAACGAACATTC
GAAAAACGCTTACAAAGTAAGTTTTCGTTATTCAAAGAACTTGGGTTATT
TAAAAAAGACTGACCACCGGGCCGTATTCCCGGGGGTAGGGagggatact
taggcaaatggagggtaagGGTATGTGCCACCCTCAAGGGTCCCTGTTTT
GGACCTTCAAAGTCGTCGCAAAAATCACAATTTCTAATTTCAGccccccc
tcccccTAAGGGTCACAAAAGAAGTGAAACTACCAATATTTACCCCGAAA
AAGGCCAAATTTCGGGAAAacagtcccgctaagggtcccaaatctacaaa
atttcgtgttttttttcaattttagacccataattttccgattttcaaaa
atcgggcggCACCACCCCGttatctcgcaaacctagtaccccgcCCCCGG
GCCGTATTGGACAGAACCGCAAGAAGATTCAATTTTAGTGAATCAAATCG
ctaaaataattgttaaaatatTGTCTCtggtttcaaataaaaattttttt
gattgtaATTACAGGAGAGAAGTATTGTTTGTCATGATGTCCAGGCTCAT
TAATCGTGCTGAAGTTGAGGTaatttcgttcgttcgttcgttcgttcgtt
cgtacattcgttcATCTTCTCGATTTAAAGGACATCATTTAACGTATATT
TTGCTATTCTCGTATAATTTGCTTACACATCGttttaaacaaaagatttt
attaatttATGCTTGACGCTCGGCAATaaaaaaaaGGATCAAATGTAGGT
GGAGCAACCCAGAGCGGGTAGATAGTTATCGAAAGAGGaaccttcgggtc
gccctcgactgcgttTGCAGACTTACTTATATATTTTAAGTAAGGTTATG
ACTTGACTTTTTTCCATCTTTTCACAGGTTCTTCCAACTTACCATCCTAC
TCAAGCCGAAAAAGCTGATCCCTTTCTCTTCTCAAGAAATGTTCGTGATT
ATATGGGAAAGTATGATGATtcctttcttttgaaaactacaaCTTATCAT
GAGTGCCATTACAACcaattacaaccaatcagctattgggtccgtgatgt
aatgtcagaagacattacaATAGCGCATATCGTGAATAATGACAGTCttt
gaataaaaagatttttttatcttttttatgatatttttctcgtatgcgta
ttatcaacacttttacttctttttatctCCGCCAAAACAGAGCGGCCAAG
GTTCCAGTGACAGACCACTCATATGAAGATTGTAGACTAATGCAAACTGC
ACATTCACTTGGTCTGCCCATGGATGCTGGATTGGTCGAATATTATAAAC
TTAGCCCAATGATCGGGTAGGTATTTTGCTCTGATTGCCAAAATTAAGGA
TTACCAGCTGTGTAGACTTGAGTACCATGGTGGAGTGACGGGTAACAGCA
AACCAACGTTTAGCCCTAGGTTCGATACATTAAGGGAACTACTTTTCGCG
GTTTTGCGGAACTGATTTTTGCGGTGCGAGGGTACTGAATTGGCGCATTT
TGCAGAACTAATTTTCTCGTTGACACCGTATTTTTgccgaaattctttca
ttttcttaggGTTTTTTGCAGATTGTAAGTAAAAATTGTGTTTCGCAAAA
CCaattttcgcggtagacacccaaaaacgcgaaaactagttcccgcgaaa
atatCCCCGTAAGCTATGTGAAGCACTACTGTAATTGACGTTAATTTGGc
gttatcatttttcttttcagaatgaATTGTGACTGTATGATAGATTATAT
GAAGAAATTTGCTGAAATAGATTCTTCAAAAGATGGAAAGTTAGATTTGG
AAGAATTTTGCGATTATCTTCATTTGCCAATCAGTTCGGAAGAAGTCAAA
ACTATTTTTCGCATCTATGATATTGTAAGAGTTTTACTTTTGTATCGGAG
TATATACGACAAACTATCGGTCAGACCTTTTTGGGGAAATCAAGtcttaa
agtttttattttcataacaagttggtatcgtttgcttactcatcaatttt
aacttATAAGCCTTTTCGTATTGAATTGATGCAATGCAACGGCTTCGCGC
GTAACGGACGTTTTTTCTAACGTCAAAAGAAAGTGTGAagttttttatta
gttttttgctgtttaagtcgagaaaaagaagaaaatcatcaCATTTTTGC
ATCAAAAAGATTCTCGAACAGATTCTGCATCTTTTGGTGTATTTTCCATA
CTAAACGTCAACaggaaatggaaaaaatgaactttttgctCCTGATTCTG
TTGTTTACATTGACTGACTCGTGTGCTATTCAACAAAAACAACGAGAGTA
CGCACTGTACACATCCAAAAGAACTTTCTACTCAGCTCCAATCACGTATT
ATGCAAACCATTGCTGTTATAACAGACTGTTACTGTGTGGAGATGTCGAA
ATCAATCCTGGACCCATTTTATGCGCCTCATGCAACAAAACAGTAAGAAT
AAACTCGAAACGGCTTGAGTGTGTATCGTGCAAAGAACAGCTTCACCATA
AATGCGCCGGTAAGAATGTTCGAATAGATAATGCCCGTGTTCCGTATCTA
TGGACCTGTCACACGTGTACGTTAACCATCCATCCATTCTTCAATATTCG
AAACTTGTCTGATTTGGATTCTACAGTGCCCGATCTAACCAACGGCACTA
CGCCTCCCTCTGTGGCTCTGCTCGACCAACATCGAAAGCACCTCTCCATA
GCGCATCTGAACACCCAATCAATGAAATCTACCTTCGCCGAATTCGATAT
AATCACCATGTCCGAAACCTggttaaaagacaataaaaactTGCTGTCTC
ACTATGAAATCGCAGGCTACGAAAAAGACTTTCGAAATCGTGACGCTAAA
CGTGGAGGTGGTGTCGGCTATTACATCAAATCAAACATCCTACACAAAGC
CCGAAAGGATATCGAATCTTTTGACACAACCATTGAGCATCAGTGAATTG
AACTTACTGGTAAGAATCGACTTTCCAATGTCCTAATCGGTATTGTTTAT
CAGCCCAGCAGCAAGTCTCGTGATAAGCTATATTGGTTAGTTAAATTCGA
GTCACTGATTTCCCAAGCGACAATCGTTCACCACGGTCCAATAATCATCA
CAGGAGACTTGAACATCGATCTGCTTGTGCCCTCACCTGAGCACGAAGCC
TGCAACAATATCTTGGGCACGCTCAATCTCAAACAACTAGTATCCGAACC
CACGAGAAAGTCGAGAACTCTTATTGACCACGTCATTACCAACACTGATA
CGAAATTGATCGCGAGTGACGTTGTCTTCTGTGACGAAATATCTGATCAT
GACTCTCCATTTTGtatattaaaaatcaataaacctCGATACGAACCTCG
ACACAAATACATTAGAGACGAGCGAAGCCTTGTATTTGAAAGCTATGTTA
ACGATTTTCGTGAGCTTCCATTGAACATCGTGTACGCTTTTGACAACACC
TCAGATAAGGTCAGTGCACTCAATAAACTAATCACTGAGTGTATTGACCG
CCATGCACCTATACGAAAAGTTAAATTGACACGCCCATCATCTCCGTGGA
TGAAAGATCTAGATGTACGAAACCTGCAGCGTCAGAAAGAAGAACTTCGA
GTGAGTCTGAAAAACGATCGAAACGACGTACAGCTAGAGCAGCTCCGAAA
GACAAGAAACGATCTCAAATCAAATATCCGAGatgcaaagaaaaagtttc
taaaaaaccTTCTCGCAAATAAAACTTCCTCAGAATCATGGAATGTCATC
AACAAAATTCTTCACCCTCGCTTGAAACGTATGAGTATCGATCCAGACGA
AATCAACAAATTCTTCAATTCAACTGCTGTTCGCACGACGGGGAAGAATG
CTGGAGAGCTCTCAAAATCTTTTATTCGCGAGTTACCTGATCATCCAGAT
AACTTCCATCTTCGCCATGCGACTCATGACGAAGTACTTAAAGCCATCCA
AAAACTGAGATCGGACTGCTCAACCGGCCCAGACAATATCCCATCAAAGT
TCGTCAAAGCAGTGTCAGAATACCTCGCATCACCCCTGACTCACATCATC
AACAGCTGTATAACAACGTCAACTTTTCCAGACGACTGGAAAATTAGCCG
AATCTGTCCTGTACCCAAAATCAACGATCCCCAATCACTAGTCGACTACA
GACCCATCAGCATCCTACCAATCCTATCCAAGGTATTCGAAAGAGTCATT
CTTCAACAACTTACAGACCACATTGAAACGAAATCTATTTACCTCGACAG
TCAATCCGGTTTCCGAAAATCTCATTCAACCACAACTGTTCTACTTAAAC
TGAAAGATGATATTAAAACTGCTATGAGTAGAAGTGAAGTGACCTTAtcg
atttttgccgatttctcgaaagcttttgatacaGTTGATTATCGTATTCT
ACTGGAGCATCTCAACAATCTTGGCTTCTCCCGACAAGTCTTGTTTCTTA
TCGGTGATTATCTGTCCAACCGTAAACAGTACGCTCAGATCGACGACAAA
TCGTCTAACAAGTTAAACGTTCAGTTTGGTGTTCCACAGGGCAGTATACT
CGGCCCTATTCTGTTTAACTTATACATTACCACAATAAACACTAATGGTC
AGAGTACCTATCTTCTCTACGCTGACGATACAACACTACTACGCCACGCA
AAAATCAAAGAGATACAAAATACCATCGAATCCGTACAGATAGAAATCGA
TAACATTAACCAGTGGTCGGACCGAAATAATCTCTGTTTGAAtgctaaga
aaacaaaaatgactGTATTTTCAACCAGACAGCTAGCACAACGCCACTCG
CTTGCTGACTTGGTTGCCGAGATAAAAAGTGCCGGCCAAGACATCGAAAG
AGTCCAGAACTTCAAGATTCTCGGCGTCAAATTCAACGAGCATCTTGATT
GGACTGAGCATGTTAATCAGACGCTAAAGTGCTGTTTTGCTAAACTTCGT
AACTTGAAACAGTTTCAAAACATCACAACGTGGCACCAACGTAAAATGCT
AGTGGAGTCTTTGGTGCTCAGCAAATTAATGTATGGATCTGTGCTACTTT
CAGATGCTGCAAAATACCAACTAAAACGTTTGCAGAAAGTTCAGAACGCC
GCGGCTGGTTTTGTGCTGAAGCGCCACGCCTCCATCAAAGATGTTATCGA
GCTGAAATGGCTACCCGTCACCGAAATGATCGACTTCACCATGGCAAAAA
CCGTACACAGCGCACTCCATAACCCCGATTGGCCATCTTACCTACGCCTA
TCCAAAGTAACCAACCCTGACAGAGAGCTGCGTtctgaaaacattatttt
gcATGATGTTGAAAACAGAAATCGTGTGGCCGGTACCTTTGAGCACGAGG
GTGCTACATGTTTTAATGACTTACCTATCAACATAAAGCATATCGAATCA
AAAGATAGCTTTGCAAATCAAgcttggaaattttattttgatagggCATT
AGCTAAATCATTGACTTCAATttgatctttgaaatttttcaataatcaCC
TATTCGAAGTTACCTAAGTATCTCAATAACTATATTCTTGATAGTGTTGC
GAATTCTAATGTTTTACTACTTCAAGATTCTAACCTAACTCCATCCTTTC
CTTTTCATTGAACGTTTTTGACACATTAAGCtttaaattagtttaaaatt
tatttacatttatgcttatatatctatatctataattataatataatata
attataaaatattagtgcctttttatgtttcatcttttcaacactttctc
tccttgaggtcagatctctgatcttcaccatatatatttttaacaataag
GCTGGGACAGCATACTCCtttttttAGTATCTTATTTagtatcttatttt
tttttgtatcacATTCCTCAACTCAAACGCCTCATCGAATTAactacaat
atttttttatttttttttcacacttcTCACAATCTTGTTTCTATGCCTAG
TCCTCGGCCTATATAAATTCATAATATATTTACGAGATATTATTTATCTA
AAaatagtttatttatttcttactgTCTGTCATAATTTATCTAGGACGAC
TATCTTGCGAACAAGCCGTTATCCAGTTTAATTATTACTAATCGAACAAA
CTTCCAAACGTCATATTTCAGTATTCTGATTCCGAGCTTCACTTAGTTTT
CCTTATTCCTTCTGATGAGTCCTTCTTCCCGTATCTGTTCGAGTTGttag
ttatttatatatttcatacacacagcatatacattatataacacttttct
tgtaagaagaaccaatatttttggagatcaaggaaataataatgttaaaa
aaaaaaaaaaaaaattgactccgTGTCTGTGTGGagtaagattggtcaga
aagaaggaaagaaaaacaatttttgtttattcagcacgaCTAATTCGAAA
TCGAATGGGGAATCGTATCcgttcgaattagaaagagattcaaattatag
aaagttttTTAAGATAGTTTCTTCTTGACGGGGAAGCaagatcgaattat
agaaagattcgaattagagggaGAGTTAATTAGttttactttatgttttt
gttagGACGGTGACAACTTGATCACATTTCGTGAATATTTACTTGGATTC
ACTTTAATCTCAAGACCCTTCAATACAGAAGAAAATATCGAAACTGCATT
CGCTGTAAGTTTGACATTTTAAATGGggtattcataatatgcaccattgc
aatgtcttccacggatccaacagctgattggttgcaagtgatgtcttgac
tgattttacgtcacttacaaccaatcagctactgGGTCCGTGAGGTatta
tcagaagacattgcaatggtgcatatcatgaataggagaAAAAATGTGCa
tccccctgttgaggaggtcttcttgggaaaggtgacccctggaatttatt
ttttcaatttttcaggatccccttggattttccatttaattttactgacc
cctctggatttttCACCCTACCCCATATggtctaagaccatgttcacacg
gtATTGTTCCATTTCGCTCCTTAACTAAacgaagccattctattggttag
aagtgacgttgaacttgaatttaaccaatagaaaggcttcatttcgtttc
ggagtgaAAGGGAACAATACcgtgtgaacgtggtctaaATATCAGTTGAA
AGTTTTATCTTTTTCTCATATTAGATGTTTGACCCCGATAATACGGGACA
CATTGAATATGACAATTTCTCAACACCCATCCAAAGTGTGTTACCGATTG
AAGAGAAACATATCAAGTTAATTTACAAGAATATGAACGCTGAG Coding sequence (CDS) from alignment at sc0000188_pilon:1813..10406+ >XLOC_043595 ID=XLOC_043595|Name=XLOC_043595|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1584bp|location=Sequence derived from alignment at sc0000188_pilon:1813..10406+ (Clytia hemisphaerica_ch_hm2_pilon)
tttttaatttttaattcagGAACAACCACAAATCATCAAGCCTTTGTCAC
TTTCAAGCCTGGAGCGTTTTACCCTGGATTACCAGTTCAACCGATATTGT
TGAAATTCAAAGACAAATTGtttttaatttttaattcagGAACAACCACA
AATCATCAAGCCTTTGTCACTTTCAAGCCTGGAGCGTTTTACCCTGGATT
ACCAGTTCAACCGATATTGTTGAAATTCAAAGACAAATTGGATTATGCAT
CATGGACTTGGATGGGACCAAGCACGATTATGCATCATGGACTTGGATGG
GACCAAGCACGAGAGAAGTATTGTTTGTCATGATGTCCAGGCTCATTAAT
CGTGCTGAAGTTGAGGAGAGAAGTATTGTTTGTCATGATGTCCAGGCTCA
TTAATCGTGCTGAAGTTGAGGTTCTTCCAACTTACCATCCTACTCAAGCC
GAAAAAGCTGATCCCTTTCTCTTCTCAAGAAATGTTCGTGATTATATGGG
AAAGTTCTTCCAACTTACCATCCTACTCAAGCCGAAAAAGCTGATCCCTT
TCTCTTCTCAAGAAATGTTCGTGATTATATGGGAAAAGCGGCCAAGGTTC
CAGTGACAGACCACTCATATGAAGATTGTAGACTAATGCAAACTGCACAT
TCACTTGGTCTGCCCATGGATGCTGGATTGGTCGAATATTATAAACTTAG
CCCAATGATCGGAGCGGCCAAGGTTCCAGTGACAGACCACTCATATGAAG
ATTGTAGACTAATGCAAACTGCACATTCACTTGGTCTGCCCATGGATGCT
GGATTGGTCGAATATTATAAACTTAGCCCAATGATCGGaatgaATTGTGA
CTGTATGATAGATTATATGAAGAAATTTGCTGAAATAGATTCTTCAAAAG
ATGGAAAGTTAGATTTGGAAGAATTTTGCGATTATCTTCATTTGCCAATC
AGTTCGGAAGAAGTCAAAACTATTTTTCGCATCTATGATATTaatgaATT
GTGACTGTATGATAGATTATATGAAGAAATTTGCTGAAATAGATTCTTCA
AAAGATGGAAAGTTAGATTTGGAAGAATTTTGCGATTATCTTCATTTGCC
AATCAGTTCGGAAGAAGTCAAAACTATTTTTCGCATCTATGATATTGACG
GTGACAACTTGATCACATTTCGTGAATATTTACTTGGATTCACTTTAATC
TCAAGACCCTTCAATACAGAAGAAAATATCGAAACTGCATTCGCTGACGG
TGACAACTTGATCACATTTCGTGAATATTTACTTGGATTCACTTTAATCT
CAAGACCCTTCAATACAGAAGAAAATATCGAAACTGCATTCGCTATGTTT
GACCCCGATAATACGGGACACATTGAATATGACAATTTCTCAACACCCAT
CCAAAGTGTGTTACCGATTGAAGAGAAACATATCAAGTTAATTTACAAGA
ATATGAACGCTGAGATGTTTGACCCCGATAATACGGGACACATTGAATAT
GACAATTTCTCAACACCCATCCAAAGTGTGTTACCGATTGAAGAGAAACA
TATCAAGTTAATTTACAAGAATATGAACGCTGAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000188_pilon | genome | sc0000188_pilon:1813..10406 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1093-1212:8475 |
| Aaloc | 994-1092:7856 |
| Aaloc | 841-993:3022 |
| Aaloc | 715-837:2492 |
| Aaloc | 631-711:2178 |
| Aaloc | 577-630:1816 |
| Aaloc | 541-573:953 |
| Aaloc | 421-540:1 |
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