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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000335_pilon:176876..180518+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043553 ID=XLOC_043553|Name=XLOC_043553|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3643bp|location=Sequence derived from alignment at sc0000335_pilon:176876..180518+ (Clytia hemisphaerica_ch_hm2_pilon)
CCCTTTGTTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAGT
GACACATGTCTCAGATAAGCACGAAAATCACTTAGTTGATGAAGTAAGAT
CATTATTTTTCGAATCTGTGTCATTTGTGTAAAGGTTGACATAAGAGTCT
TTAATAAGAGTGGTATCTTTTCAGATCTTTTAGCTATTTAGCCAAAATTa
tgctttttgaaattttttgcaattcttatataaaatatcattttaaatgt
tatttctatttagAATCTCTTCAAACATCTTCCCAGTGAAAGACAGTTAC
CTAGTGATTTGGAGAAAGACACTATAgagtttttgaaattgaaaccaAAC
AAGAAACTTGTCCAGCAAGATCTTCAAATTAAAAGTGGAAAAGTTGTTTA
TATGAGAGACGTTCACAATCTAGCGCAGAAAGCTAAATCAAATAAAACTA
GAAACGAGCTTCCTGAAGTTGTAAACATTCTAATAGAAGAATTTGGTAAG
TAGTTGTAGATTTTCCTTAAAACTCAGCGGGAGGAGTTATAGGTCTTGGA
ATAAGACCACGAGTGTTGtggcttgaaaattttaaacaattagGCCAAAA
ACAGGCTTTTCTCAGTACAGTAGAAGATATttgtaggcaaaatatctcCT
TTAACCCTTAAGACATACTAACGGgtgcttcaaaaaaaaaaactggaaca
aatttgaatcaaaattctgaaaaaactataattgggtaaaggccacattt
ttggtacacctgtcccttccattacatcaaaaaattttcatccccaaaAA
GCTTCATATTTTTTCTGACTCAACAATACCTATGGCATGAAAATAAACTT
TGTGCCCCTCAAAATTTTAGGTTGGAAATCTTTTTCAGCCTCAATGTGTC
ATACGCTTGCACTTTTAACTTATTTTAGAAATCAGTTGGTAGCATTTTTT
AAACTGGTTTCCATTCCTTTAACTTGGTATGCACCATtttgcgtaacgga
agggacaaaccCTAGTCATGACATCaaattctttatatttttcCCACTAT
ACTAGTGATAATCAGCATTATCATCATGCAGaacttttgtttttatctta
TTGGGAGAGTTGGCTTAGGCAGTGTTTTTATTATAGCTGCTTGTATTTGT
CAAATGAGGCATTCTTTCAAAAGCGTAACAGAAAGAGCATAAAGTATCcg
attttcagaaacttgaaattaaaattatcaaaatcacTGACACTATTCTC
AAAGATAAgtaaatgtttttgtttcaatttgggTAAATGAATCTACCTGA
GCCTTCTTAGAGAAATTAGTATCAAAGTTTCCagctttttctttgaaata
atttgatcaaaatcaggagtttttgttcaaaatcacgagtttttgttcaa
aatttattttcagatttaaaCTCTTCACCAATGGAAAAGAGGAAGGCCAA
CTTAAATTCTGAGTTATCTTACTTTAAATTtgctatatttaaaaaaataa
gtactcaaaatttttcttttaaaaaaacgtcaattttgaGAAAAGGAggg
gggggTCAaatttgtcttttcaacaaaattcgagagcattttgaatgttt
tgatgatttatagaaaaataaaagacaaatgATGCTGTATCATCATAGTA
CAATATTGTATGAGAAATACACGAGTATCATTAAAAAACTAGGTAAAGAG
GGAATAAgttttcctattgaaaaattcaaacagtTGCCTCTAATCTCTTA
ACTAAATCTAGTTTGTGACTAATGTCCTGTTTACTACCAgaaaaaaaaag
ctttgaaaTGATTTGGTTCATTTTGGGTAATTTTAGCCTCAATTTGTTTA
CAATAGGGTGTTAGAAActcatcattttgaaaaaaagtaatcttatgaaa
attttaaactaGGAAGGTTGATTTTCGTGACGGTcccctccttttttggg
aaaaatttagggtgtaaccccccctccccaaccagcaggggggggctgac
gctatgaaaTTTATCTTgtttctgaatttgaaattttgacttatATGTTA
GTTTTCTCATGGAATTCATGATTCAAACTTGTTCcgtttatttttttgaa
acacccaGTAGAAAATGTTAGAAACCTTTTGAACTCGATGTGCTTTTATC
CAACATAGGTTTGTTTACTCCTCCAATCAAAGGGGGTGTTTTTAAAGATC
TTATCCTATCTTGACCTGATATTACGATTCATATCTTGACCTGCTATGCC
TATGAAATATAGTGGCTAATTTTAGGTACAAGATGTGCATTTCACTCATT
ATAAAAATAGAACCAAATTTTTGTGCACTGTAACGATTTTCAAAGCACTg
ataattaaattatttttcccaGGTTGTACCGTCAATATCAACAAAGATGA
CGAGGACACACTTTTAGGGCTGTTCTTTCAGGACGAGTCCATGAAGATTA
ATTTTGAAGCGTATTCTGAAGTATTGTTTATAGATGCCACGTACAAGGTT
AATGAATTAAGAATTCCGGCATACATTCTTTTAGTCGAAGATTCTTTAGG
TCTAAGTGAAGTCGTTGGTGTGGCACTTTTGGTTaacgaaacaaaacaaa
atgtcacCTGGTTAATTGAGACTTTTGCTGCGCTCAACAATAGTGAAAAA
CTTAGAGTTGTTATGGCAGATAAGGACATCAACGAACGGAAAAGAATTTC
TGAAATTCTTGGTGTCCCTATCCTTATCTGCCTTTTTCACGCATTGAAAG
CATTTAGACGTGAAATGGGTATTTTGGAGATCAATAAAGATCTAAAGACC
AAAGCGAAAGAACTGTTCGAAAAAATGTGTTACGCTTATACTGAAGAGAA
CTTCAAATTGTACGAGTCTCAATTTTTAGGACTAGACACAGAAAGTTCCC
CTTTGATAACCTATTATGTGAAGAATTGGCAACCATTCACAAAAGATTGG
GTTAAGTGTTTTAAAGCCCAAAGTGGCAATTTTCTGAACTCGACCAATAA
CAGActtgaaagttttaattcaaAACTCAAATCGGTCATAGGTTTACATT
GTTCCCTGGAAGAATTTATCCGTGGTTTCTTTTCTGTTCTGAGCACTTTA
AGAACTGAAAGGGATGCCATTGTAGCCAAAGAGTTTCAGAAAGTGAAGGT
TATTGTAAGTGAAAACCCAATCATTATTACGATAAAAGAATATTTGACCT
CATTTGCTGCGAAATTTGTATGTGAAGAATTTAACAGCTTCACTAAAACA
ACTATTCGAAGCTACCACCATACCACTACCACTACCTGCAGCTGTCCTTT
TGCATCGTCAATGAGACTGCCTTGCAGACACATATTTCTTTCGCGTTTTG
AGACTAACTGCCAGTTCTTATTCGTGGAGGAGCTCTGTATCAAAAGATGG
TCCAAAAGCTATTGTTTGGAAACCCAGCGTTTGTTCAAGAAATCAAATGG
TTCAAATGGTTATGGGGCACCGATCAACACCACAACCAGACGACCAGAAA
AAGCCTTGAACCAAGCTGAAAGATTCAACAAAGCTCTGGGGATCTGCAAA
CAACTTTCGTCGCTTGTTGCAGAACATGGTGGTGAAACTTTTGTATCGCG
AATAAAGACTCTTACATGTCTTCAATCCATTTGGGAAAGAGGA Coding sequence (CDS) from alignment at sc0000335_pilon:176876..180518+ >XLOC_043553 ID=XLOC_043553|Name=XLOC_043553|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3192bp|location=Sequence derived from alignment at sc0000335_pilon:176876..180518+ (Clytia hemisphaerica_ch_hm2_pilon)
CCCTTTGTTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAGT
GACACATGTCTCAGATAAGCACGAAAATCACTTAGTTGATGAACCCTTTG
TTATCAAATTACGAGCTGACAAAGATTTGCAGTATTTAGTAGTGACACAT
GTCTCAGATAAGCACGAAAATCACTTAGTTGATGAAAATCTCTTCAAACA
TCTTCCCAGTGAAAGACAGTTACCTAGTGATTTGGAGAAAGACACTATAg
agtttttgaaattgaaaccaAACAAGAAACTTGTCCAGCAAGATCTTCAA
ATTAAAAGTGGAAAAGTTGTTTATATGAGAGACGTTCACAATCTAGCGCA
GAAAGCTAAATCAAATAAAACTAGAAACGAGCTTCCTGAAGTTGTAAACA
TTCTAATAGAAGAATTTGAATCTCTTCAAACATCTTCCCAGTGAAAGACA
GTTACCTAGTGATTTGGAGAAAGACACTATAgagtttttgaaattgaaac
caAACAAGAAACTTGTCCAGCAAGATCTTCAAATTAAAAGTGGAAAAGTT
GTTTATATGAGAGACGTTCACAATCTAGCGCAGAAAGCTAAATCAAATAA
AACTAGAAACGAGCTTCCTGAAGTTGTAAACATTCTAATAGAAGAATTTG
GTTGTACCGTCAATATCAACAAAGATGACGAGGACACACTTTTAGGGCTG
TTCTTTCAGGACGAGTCCATGAAGATTAATTTTGAAGCGTATTCTGAAGT
ATTGTTTATAGATGCCACGTACAAGGTTAATGAATTAAGAATTCCGGCAT
ACATTCTTTTAGTCGAAGATTCTTTAGGTCTAAGTGAAGTCGTTGGTGTG
GCACTTTTGGTTaacgaaacaaaacaaaatgtcacCTGGTTAATTGAGAC
TTTTGCTGCGCTCAACAATAGTGAAAAACTTAGAGTTGTTATGGCAGATA
AGGACATCAACGAACGGAAAAGAATTTCTGAAATTCTTGGTGTCCCTATC
CTTATCTGCCTTTTTCACGCATTGAAAGCATTTAGACGTGAAATGGGTAT
TTTGGAGATCAATAAAGATCTAAAGACCAAAGCGAAAGAACTGTTCGAAA
AAATGTGTTACGCTTATACTGAAGAGAACTTCAAATTGTACGAGTCTCAA
TTTTTAGGACTAGACACAGAAAGTTCCCCTTTGATAACCTATTATGTGAA
GAATTGGCAACCATTCACAAAAGATTGGGTTAAGTGTTTTAAAGCCCAAA
GTGGCAATTTTCTGAACTCGACCAATAACAGActtgaaagttttaattca
aAACTCAAATCGGTCATAGGTTTACATTGTTCCCTGGAAGAATTTATCCG
TGGTTTCTTTTCTGTTCTGAGCACTTTAAGAACTGAAAGGGATGCCATTG
TAGCCAAAGAGTTTCAGAAAGTGAAGGTTATTGTAAGTGAAAACCCAATC
ATTATTACGATAAAAGAATATTTGACCTCATTTGCTGCGAAATTTGTATG
TGAAGAATTTAACAGCTTCACTAAAACAACTATTCGAAGCTACCACCATA
CCACTACCACTACCTGCAGCTGTCCTTTTGCATCGTCAATGAGACTGCCT
TGCAGACACATATTTCTTTCGCGTTTTGAGACTAACTGCCAGTTCTTATT
CGTGGAGGAGCTCTGTATCAAAAGATGGTCCAAAAGCTATTGTTTGGAAA
CCCAGCGTTTGTTCAAGAAATCAAATGGTTCAAATGGTTATGGGGCACCG
ATCAACACCACAACCAGACGACCAGAAAAAGCCTTGAACCAAGCTGAAAG
ATTCAACAAAGCTCTGGGGATCTGCAAACAACTTTCGTCGCTTGTTGCAG
AACATGGTGGTGAAACTTTTGTATCGCGAATAAAGACTCTTACATGTCTT
CAATCCATTTGGGAAAGAGGAGTTGTACCGTCAATATCAACAAAGATGAC
GAGGACACACTTTTAGGGCTGTTCTTTCAGGACGAGTCCATGAAGATTAA
TTTTGAAGCGTATTCTGAAGTATTGTTTATAGATGCCACGTACAAGGTTA
ATGAATTAAGAATTCCGGCATACATTCTTTTAGTCGAAGATTCTTTAGGT
CTAAGTGAAGTCGTTGGTGTGGCACTTTTGGTTaacgaaacaaaacaaaa
tgtcacCTGGTTAATTGAGACTTTTGCTGCGCTCAACAATAGTGAAAAAC
TTAGAGTTGTTATGGCAGATAAGGACATCAACGAACGGAAAAGAATTTCT
GAAATTCTTGGTGTCCCTATCCTTATCTGCCTTTTTCACGCATTGAAAGC
ATTTAGACGTGAAATGGGTATTTTGGAGATCAATAAAGATCTAAAGACCA
AAGCGAAAGAACTGTTCGAAAAAATGTGTTACGCTTATACTGAAGAGAAC
TTCAAATTGTACGAGTCTCAATTTTTAGGACTAGACACAGAAAGTTCCCC
TTTGATAACCTATTATGTGAAGAATTGGCAACCATTCACAAAAGATTGGG
TTAAGTGTTTTAAAGCCCAAAGTGGCAATTTTCTGAACTCGACCAATAAC
AGActtgaaagttttaattcaaAACTCAAATCGGTCATAGGTTTACATTG
TTCCCTGGAAGAATTTATCCGTGGTTTCTTTTCTGTTCTGAGCACTTTAA
GAACTGAAAGGGATGCCATTGTAGCCAAAGAGTTTCAGAAAGTGAAGGTT
ATTGTAAGTGAAAACCCAATCATTATTACGATAAAAGAATATTTGACCTC
ATTTGCTGCGAAATTTGTATGTGAAGAATTTAACAGCTTCACTAAAACAA
CTATTCGAAGCTACCACCATACCACTACCACTACCTGCAGCTGTCCTTTT
GCATCGTCAATGAGACTGCCTTGCAGACACATATTTCTTTCGCGTTTTGA
GACTAACTGCCAGTTCTTATTCGTGGAGGAGCTCTGTATCAAAAGATGGT
CCAAAAGCTATTGTTTGGAAACCCAGCGTTTGTTCAAGAAATCAAATGGT
TCAAATGGTTATGGGGCACCGATCAACACCACAACCAGACGACCAGAAAA
AGCCTTGAACCAAGCTGAAAGATTCAACAAAGCTCTGGGGATCTGCAAAC
AACTTTCGTCGCTTGTTGCAGAACATGGTGGTGAAACTTTTGTATCGCGA
ATAAAGACTCTTACATGTCTTCAATCCATTTGGGAAAGAGGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000335_pilon | genome | sc0000335_pilon:176876..180518 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 328-1596:2375 |
| Aaloc | 94-324:264 |
| Aaloc | 1-93:1 |
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