XLOC_043520 (mRNA) -

Overview


Name	XLOC_043520
Unique Name	XLOC_043520
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000015_pilon:570672..577086-
coding sequence from alignment at sc0000015_pilon:570672..577086-

mRNA from alignment at sc0000015_pilon:570672..577086-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043520 ID=XLOC_043520|Name=XLOC_043520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6415bp|location=Sequence derived from alignment at sc0000015_pilon:570672..577086- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGCAAGATATCAGGCTTGTTTAACACTTCTTCAAAGGAAGCATAT
CAAGGCTCAAAAAGATTGGTTGGAAGCATGTATTGAGTGGATCTTAGAAG
AAAATGGTGTAAGTTGACAAATTTCATCCTATTATCAAACATAATAAAAA
AGTGTTATTTCTTTTGAAACAGGGAGCACAGCTGCAGGTTACTGAGCAGG
ATGGTGGTGTCTAATTTTAAATCTCAAAAAAGTTAGTTAGTTACATTTGG
GGTAGGGGTGGGTAGATCACTCATTTCAAGCTAGTACCTGGTACTGAATT
TTGGTATTTGGTGGGTAAAAGGGGTAATTTTGGCGAATCAAAATGGAAAT
TGTGTCAATTTTCCGGAAAAAATTCCCGAAAAAATTAGATTTCATTTAAC
AAAAACTTTTGATTTGTAAAATCAAATGATTTCAAAAAACTTTCAGATTT
TGAGCTCTTCCACACTTTGGTGAGGTGAAATTGACTGACTGCTAGGTATC
ATAAGGTACTTTTCCAGGGTTAAGAAGGGGGTGGTGGTACCTAAGACAAA
TCTTTCTGGAAATCAGGGTTAGTACCCTGCAGCCTGTACCCCCTGTTTGA
AAGCTAGCTACCATCATTATAGTTTAGAAAGTCTTTTATACCAATTTGTA
CTCTTATCAAATTTTTCAATATTTTGATATTTTTTGGACCTACCTAAGGT
AGTCCTTTAAATTAACCCTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGT
TCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGGTTCGTTCGTTCGTTCGTTCGTTCGTTCG
TTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTTCGTTCGTTCGTTCGTTTCGTTTCGTTCGTTCGTTCGTTCGTTCGTT
CGTCGTTCGTTCGTCGTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTC
GTTTGTTCGTCTGTTGCCAGCTTTTCTCGGGATCAGCTCATTAGTTTTTT
CTAATTTTTTGGACAATGATGCAAAATGGCAATGCCCAAAATGTGACGGA
GCCCGATTCTCGAAAAAAAAATTTTCCGACCGAAAATGGCAGAAATATGC
CGGAAAAACTGGTTTTTCGGCATTTTCTTGAGATTTCATCATTAGTTTTT
TCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCCT
AGTCCAATTCTTGAGAAATGCCGGAAATCGCCGTTTTTCTGGATTTTCAT
TGGACTTTTTCCATATAATTGGTTGTTTTTTCATTCAAAAACATTATTAA
TAGCAATGCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTGATTTT
TGAAGCCGGAACTTTCTAAAAATCGCCGGAACAGCCGATTTTCGCCGGAA
AAACTGTATTTCTTGAATTTCTTGAGCTGTACTTTATATTTTTTCATGAA
ATTTTGCACACTGATGCAAAATGTCAATACCTAAATTGTGACGGAGCCCG
ATTTTCGAAAAAAATTCAATTCCGGGCGAAAATGCCTGAAATATGCCGGA
AAAACTGGTTTTTTAGCAGTTTCTCGAGATTTTATCATTAGTTTTTTCTG
ATTTTTTGCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCTGAGTT
TGATTTTGAGAAAAGTTTTTTTCCGGCGGAAAATGCCTGAAATATGCCGG
AAAAACCGGTTATTTGACATTTTCTCAAATTTTAATTTTTATTTTGTTCT
GATTTTTTGCAGAAAGATGCGTATTCGCAATGCTCAAAACATGGCCGAGT
TTTTTTCCGGTTGAAAATGCCTGAAATGGCCGTTTTTGCAGATTTTCATT
GGATTTTTTCCTTATATTTATATGTTTTTCACTCAAAAACATTATTGATA
ACAGATCATGTTCAAAAATAGTGTGACATTTAGTGAACTCAAAAATTGAC
AAAAATATAGTATTTCTTGAATAACTCGAAAAATATTTCAAATATAACGT
TGAAATTTTATATGATGATCGGTATTTACACAAAGAACATATTTTGATGA
AAAAAATGGTAAAATGAGTAAAATGTGTGGCTCCAGGTCCAAATATGTCC
AAATATGTATTTTGTCAGCCACCTCAAAGGAGGAAATGGTTTGTTTGAAA
ATGACACTTGAATCGGTAACTAGAGGTATCATATTATCTCAAAACAGATA
AACGAGCAACATTTTGAAACTGGTTGGTTTCAAAAAGCCACCAGTGTTGT
CAGCCACATAAACGACTCATAGCTTATCTTGAAATATCTTGCAACCTAGT
AAGCCACTTAAAATTTCGCTCCAAAACAATTGGAAAGGTTGTCATTCTAC
TTATCCTTGGTGAAAAAATAAACTGTTAGCCACCAAAAATACTCATTTTA
GTAGCATAATTGTCAGCCAACTTTGAAAATGTCACAAAACAGGCCTTTAT
TTTTGAACACGATCAACAATGCTCACCATCAAGCATGATTCAATTGTCAA
TAAAACTGATTTTTGCAACCACAACTTCCTATTTATCATTTCCCTACAAC
CCTTCCCTCTCCCCCCATCAACAATCAATGATGAATTTATTGCGTTCTGT
ATTTTTGCTAAATGCTATATTTTCTGACTGATTTTTTTATTTTTATTTTC
GCATTGCTTTCTAACTTTCATCATCAGGTAGGTCCATTCAGCATGTTGCT
TGTTCTCCCTTAGGCAGGAACAAGTAACTCTACCTTTGCAAATCTGGTTT
ATGAGCAATGGCTTATGGCAGATCTGCGTGAAATATCGGAGCCAATTTTT
CCTTCCAATATAAAAAAATTGAAAGGGAATTTGAATGGTCATTTTTGTGT
ACAGGTATGCAGTAACTCATTTTCACTTTTCAATTCATTTCGTCTCCTAA
CTAATGTTTTGTAAAGGATAATCTTGTTGAGAGGCATGATGATTGATTAA
TTTGTAATTAATTTGAAAAAGTTGTTTTGATTTTTCACTCTATTTCTATT
CAATGTGTGTATATTATCTTTGATTGTCGACAGGTGTTATCAGTGATAGA
CATTGGTTATTCAGCATATTCACAACTTCAAAAACACAAAGGGCAAGAGC
TTGACTATGATGACGGTGACGAGGAGGAGGAAAATGAAGCAAAAGATTTC
TTCAAGAAAAGCTCTGATGGTGCACCAAAAACAGCAAATAATAAGGGAAA
AGTATGTTGTAGTATATTTACTTTCAAGTTTCAAGCATTATAATGTTATT
TTTTGAAATGTAATTGATTGGCAAAGCTCGAGTTCTTCCAATTCCAGTTC
TTTCATTTTTCTTTTATAGTTACTTCTGAAGATAAACTTATTCTTAATTT
TAGTGGAAGGAAACACAGTCAAGAATGTTACTCATTGAATTGAATGATGG
AGCCCAAACTATAGAAGGAATTGAATACTCTAGTATCAATCATCTCAAGA
TTGAAAATATTGAACCTGGCTGCAAGGTATGTTTTTTTTACGGTGCTGTT
TTTTTTCTAAGAACTTTATGAACTGTAGTCACTTTCAGTCAATATCAGTC
ATAATTGGAAATTGTATTTTGTTCTCTTTCGCTCACAGTAACGTTTTTTA
TAACTGTGCTAGTTTAATATGAATTTTGAAGAATATACTAGCTAGCGACT
ATATTTTGTTATAGTTACATCTATCAGGACCAATTCAATGCCGTAACAGC
ATGCTACTTTTGAAGTCAGAAAATATCCAACTGCTTGGTGGGAACGTTGA
ATCTCTTATGGAAACTAAATCTCAGATTGATTTACTTTCAGGAATTCTGT
AAGTTGTTATAAACATATACTTCCAATGTTACTTGAATATAAATGAAATA
GTGCAGAGATTATTATAATGAGATCATAAAAGTTATTGCAAGTCTAGTTG
ATTAAATGAGAAATTTTTTAAATAAAATATTAACAGCATTTTGAGACTTT
TCCCCGTTTAAAGTAAATGAGCTTGACTCTTGTGTGTTTTGTATTTTAGG
AATGTCGAAGTCAACAAGGATGCTATAAAAACAACAAATATTACAGTCAA
AAAAGAAAATGTGAAAAAGCCTGTTAACAATAATCCAACAAAGTCAGTTG
CTGATAACCAGAAAACAAAGCAAAACCTGCAGCCAAAAAAGAACATTCAC
TCAGCATCCACAATTAGAAAACAGATTCCAGTAAAGAAAGAACCTCCAAA
AGACGATTATTTCAATGATTTAGATGATGATTTCATGAAGGAACTGAATG
AAGATTTTAGCAATGATGTTGCTGATGATATAATCTTCCAAGAAATGGAC
ATAAAATCAGAACAAAAGTCTCATTCATCCATTATTAAAAATAAAACTAG
TACAAGTTCAGCAACAACAAACTCTAAGAGTAATCAGAACATAAGAACTA
ACGAAGATAGAGATGATGATATGGAAGACTTCTTCAAAAATAATGAAGAT
GATCTTTTCGATGAAAATGAAGATGATTTTTTCAACAATGATAATCATTT
TTTTGAAGAGGAACAAAATGTTTTTGAAACATTACAAAATAAAGAGAAAG
AAAAAATGACAAAGCTTAAACGACCTTCAGAATATGTTGAGCCACAACCT
AAAAAAGAAATATGTTCAAATAAGCAGCAGCCTCCTAAGAGATCACCTCA
GTCTGACATACAACCACCACTCCAAAAACAGCATATGAAAAGTACTATTA
TTATTCTTTTATTGTTTATTAAATCTAGTCTCCACTATTGGGCCATTTCC
AGAAATTTTCAACCATAGTTGGAGAAGCATCTTTAGAGGTGCTATCAAAT
GGTGTATGGATCACAGCGCTCTTAGGCTCCTCCTGGCGGCATCCAGTCAA
AAGTGGCCATTGGAATGGTCGTATTTGGCATCTTTTATATTGGATTTAGG
AACAGTCAGTAGACGAACACTCACTTTGGCTCCTTGAGTGACCATGGACC
ATTGCAAATCCATTTGCTTTAACGGTTTTGGTGACCAGTAAGAAAACAAA
ACACTCTTTTTTATAAGAACAAAATTCATGAGTAAAAGACAACATTGCAA
ATTTTACAGATTTTAATCTACTTTTTAATCATCTTTATAGAATCAATACC
TCAAATGGTAGCTGGTGATAATCCAATATCGGTTCCATTTATCTTTGAGG
TAAGAAATTTTAATTTCAATAAAATTTCAATTTCATAAGTAGTGAATATT
TTCAACATCAAAGTTGTATTATAGTTGACAGAAAACTTCTTTTTTCTTTG
GTGTAACTCAACTTTTGTGTTGGATAATATAAAAAGCTTTATTTTCTTTC
CAGGGCCAATTCAAAACACTTGCATCCAAATTAAGCTTTGATAACCACTA
TGAGTTATTTGCAATACTTTCAGATGGTGTCAATTTCATTAAAATTCTTC
TCAGTGATTTGGTATGTAATGTTGGATTTTCCCTTAACTGATAACCCAGA
GCTTATCAAGTTTCTTTCGTTTAGGTTAGTTTAAAAAGGGATGTAAGAGG
TTAAGAGGGGATTTTTAATCTATCGTTTCTTCCCTTTGGGAAAACTACAT
ATGTGTACAGTTTTTCCGTGTTCTAGACACCTAAAATTAAAAAACTTTCT
TCCAAACCATCCATCCTCCAAAGTGAGATGACCTCCTACAAGTATGAAAG
TTAAGCTTTATTATGAAAAGGTTTAAAATTTAAATACGTGATGTTTGTAG
CAAGCAATTTGTAAAAAACGATATTTCTTCTCTAGTTTCTTTCAAATCGT
ATTTTCAGGCTTTAAATTCATTGATTGGTTACACTGCAACAAGAGTTCAA
GAAGCTGTTGCCAATAAATTATGTAATGTAGAAAAAGAAGCAATTAAAAA
GGTAAGTTTATTTGTGCAATTTCAAGAGTTTTGTGGAAAGAAAATTTGAC
CGCTTTGGCAGATTTACCTCTGAAAGAGCTTTTTCTCCTTCCCCAAATTA
AATTTCCAACAAAATTTCTTTTTTAAGGTAGCTTTATATGATTGTTGTGA
ATCTGCATAAAACTGCAGCCGTTCAGTCATAAGTAAAACCTCATACTTCT
GAAGTAAATCTAGATCAGCCGGGAAGGCATATGATGTTGAACTGTGAACA
AAGCTTGAGTCAACACTGACCTAATGGTTGCACACTTTATATTTCTAACT
TCAGGCTTTGAAAGGAGCAGAAAAAGCTTTGGAAATGAACAAATGGACCA
TGACAATACAATTTAACAAAAATGAAAATATTTATGAAGTTATTAACATG
AAACCCATTATATAA

Coding sequence (CDS) from alignment at sc0000015_pilon:570672..577086-

>XLOC_043520 ID=XLOC_043520|Name=XLOC_043520|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3474bp|location=Sequence derived from alignment at sc0000015_pilon:570672..577086- (Clytia hemisphaerica_ch_hm2_pilon)
ATGAATGCAAGATATCAGGCTTGTTTAACACTTCTTCAAAGGAAGCATAT
CAAGGCTCAAAAAGATTGGTTGGAAGCATGTATTGAGTGGATCTTAGAAG
AAAATGGTATGAATGCAAGATATCAGGCTTGTTTAACACTTCTTCAAAGG
AAGCATATCAAGGCTCAAAAAGATTGGTTGGAAGCATGTATTGAGTGGAT
CTTAGAAGAAAATGGTGCAGGAACAAGTAACTCTACCTTTGCAAATCTGG
TTTATGAGCAATGGCTTATGGCAGATCTGCGTGAAATATCGGAGCCAATT
TTTCCTTCCAATATAAAAAAATTGAAAGGGAATTTGAATGGTCATTTTTG
TGTACAGGCAGGAACAAGTAACTCTACCTTTGCAAATCTGGTTTATGAGC
AATGGCTTATGGCAGATCTGCGTGAAATATCGGAGCCAATTTTTCCTTCC
AATATAAAAAAATTGAAAGGGAATTTGAATGGTCATTTTTGTGTACAGGT
GTTATCAGTGATAGACATTGGTTATTCAGCATATTCACAACTTCAAAAAC
ACAAAGGGCAAGAGCTTGACTATGATGACGGTGACGAGGAGGAGGAAAAT
GAAGCAAAAGATTTCTTCAAGAAAAGCTCTGATGGTGCACCAAAAACAGC
AAATAATAAGGGAAAAGTGTTATCAGTGATAGACATTGGTTATTCAGCAT
ATTCACAACTTCAAAAACACAAAGGGCAAGAGCTTGACTATGATGACGGT
GACGAGGAGGAGGAAAATGAAGCAAAAGATTTCTTCAAGAAAAGCTCTGA
TGGTGCACCAAAAACAGCAAATAATAAGGGAAAATGGAAGGAAACACAGT
CAAGAATGTTACTCATTGAATTGAATGATGGAGCCCAAACTATAGAAGGA
ATTGAATACTCTAGTATCAATCATCTCAAGATTGAAAATATTGAACCTGG
CTGCAAGTGGAAGGAAACACAGTCAAGAATGTTACTCATTGAATTGAATG
ATGGAGCCCAAACTATAGAAGGAATTGAATACTCTAGTATCAATCATCTC
AAGATTGAAAATATTGAACCTGGCTGCAAGTTACATCTATCAGGACCAAT
TCAATGCCGTAACAGCATGCTACTTTTGAAGTCAGAAAATATCCAACTGC
TTGGTGGGAACGTTGAATCTCTTATGGAAACTAAATCTCAGATTGATTTA
CTTTCAGGAATTCTTTACATCTATCAGGACCAATTCAATGCCGTAACAGC
ATGCTACTTTTGAAGTCAGAAAATATCCAACTGCTTGGTGGGAACGTTGA
ATCTCTTATGGAAACTAAATCTCAGATTGATTTACTTTCAGGAATTCTGA
ATGTCGAAGTCAACAAGGATGCTATAAAAACAACAAATATTACAGTCAAA
AAAGAAAATGTGAAAAAGCCTGTTAACAATAATCCAACAAAGTCAGTTGC
TGATAACCAGAAAACAAAGCAAAACCTGCAGCCAAAAAAGAACATTCACT
CAGCATCCACAATTAGAAAACAGATTCCAGTAAAGAAAGAACCTCCAAAA
GACGATTATTTCAATGATTTAGATGATGATTTCATGAAGGAACTGAATGA
AGATTTTAGCAATGATGTTGCTGATGATATAATCTTCCAAGAAATGGACA
TAAAATCAGAACAAAAGTCTCATTCATCCATTATTAAAAATAAAACTAGT
ACAAGTTCAGCAACAACAAACTCTAAGAGTAATCAGAACATAAGAACTAA
CGAAGATAGAGATGATGATATGGAAGACTTCTTCAAAAATAATGAAGATG
ATCTTTTCGATGAAAATGAAGATGATTTTTTCAACAATGATAATCATTTT
TTTGAAGAGGAACAAAATGTTTTTGAAACATTACAAAATAAAGAGAAAGA
AAAAATGACAAAGCTTAAACGACCTTCAGAATATGTTGAGCCACAACCTA
AAAAAGAAATATGTTCAAATAAGCAGCAGCCTCCTAAGAGATCACCTCAG
TCTGACATACAACCACCACTCCAAAAACAGCATATGAAAAGAATGTCGAA
GTCAACAAGGATGCTATAAAAACAACAAATATTACAGTCAAAAAAGAAAA
TGTGAAAAAGCCTGTTAACAATAATCCAACAAAGTCAGTTGCTGATAACC
AGAAAACAAAGCAAAACCTGCAGCCAAAAAAGAACATTCACTCAGCATCC
ACAATTAGAAAACAGATTCCAGTAAAGAAAGAACCTCCAAAAGACGATTA
TTTCAATGATTTAGATGATGATTTCATGAAGGAACTGAATGAAGATTTTA
GCAATGATGTTGCTGATGATATAATCTTCCAAGAAATGGACATAAAATCA
GAACAAAAGTCTCATTCATCCATTATTAAAAATAAAACTAGTACAAGTTC
AGCAACAACAAACTCTAAGAGTAATCAGAACATAAGAACTAACGAAGATA
GAGATGATGATATGGAAGACTTCTTCAAAAATAATGAAGATGATCTTTTC
GATGAAAATGAAGATGATTTTTTCAACAATGATAATCATTTTTTTGAAGA
GGAACAAAATGTTTTTGAAACATTACAAAATAAAGAGAAAGAAAAAATGA
CAAAGCTTAAACGACCTTCAGAATATGTTGAGCCACAACCTAAAAAAGAA
ATATGTTCAAATAAGCAGCAGCCTCCTAAGAGATCACCTCAGTCTGACAT
ACAACCACCACTCCAAAAACAGCATATGAAAAAATCAATACCTCAAATGG
TAGCTGGTGATAATCCAATATCGGTTCCATTTATCTTTGAGAATCAATAC
CTCAAATGGTAGCTGGTGATAATCCAATATCGGTTCCATTTATCTTTGAG
GGCCAATTCAAAACACTTGCATCCAAATTAAGCTTTGATAACCACTATGA
GTTATTTGCAATACTTTCAGATGGTGTCAATTTCATTAAAATTCTTCTCA
GTGATTTGGGCCAATTCAAAACACTTGCATCCAAATTAAGCTTTGATAAC
CACTATGAGTTATTTGCAATACTTTCAGATGGTGTCAATTTCATTAAAAT
TCTTCTCAGTGATTTGGCTTTAAATTCATTGATTGGTTACACTGCAACAA
GAGTTCAAGAAGCTGTTGCCAATAAATTATGTAATGTAGAAAAAGAAGCA
ATTAAAAAGGCTTTAAATTCATTGATTGGTTACACTGCAACAAGAGTTCA
AGAAGCTGTTGCCAATAAATTATGTAATGTAGAAAAAGAAGCAATTAAAA
AGGCTTTGAAAGGAGCAGAAAAAGCTTTGGAAATGAACAAATGGACCATG
ACAATACAATTTAACAAAAATGAAAATATTTATGAAGTTATTAACATGAA
ACCCATTATATAAGCTTTGAAAGGAGCAGAAAAAGCTTTGGAAATGAACA
AATGGACCATGACAATACAATTTAACAAAAATGAAAATATTTATGAAGTT
ATTAACATGAAACCCATTATATAA

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043520	XLOC_043520-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000015_pilon	genome	sc0000015_pilon:570672..577086 -

Properties


Property Name	Value
Aaloc	1627-1737:112
Aaloc	1534-1626:508
Aaloc	1426-1533:963
Aaloc	1369-1425:1174
Aaloc	676-1365:2266
Aaloc	541-672:2602
Aaloc	418-540:2913
Aaloc	250-417:3233
Aaloc	109-249:3553
Aaloc	1-108:6416

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XLOC_043520 (mRNA) -