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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000094_pilon:489241..491016+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043480 ID=XLOC_043480|Name=XLOC_043480|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=1776bp|location=Sequence derived from alignment at sc0000094_pilon:489241..491016+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCATTTAACAGAAGAATCGTGTACTCATTCAGACATCAACAAAGT
GGCTACAATTGAATTTTATCAATGTGGACCTTGCAATGAGATTCTGTATT
CTTTCAACAAAATGACTATGAACTTGTCGTTCCGCATGGACCAATGGAAC
ACTTTTGTGAAACAGTTGATGGCTAATTTCAATGTAAACGCAACAAATGT
TTCTCTACAAAATCTTGATTGTAAGGAATGTGGGCAAACGTTTCCATCAA
CCGAAAAATTAAGCCAACATATCAGTACTGATCCAATGGCCTGTGAGAcc
tgttttcaaatattttcatgtcaTGTGAAGTATAAAGAGCACTGCGACAA
CCACGTAAAAAAGAAGCCATTCCAATGCTACATTTGTAAGAAAGGTTTTA
TGCACAAACAATCCCTGGATAAACATATACCATTACACAATCAAAGTCAA
AACGCTGTTGTCACCAGAGTTGATTTACCATATCGAGTAACTGGATCTTT
GATAACGGGATATCGAAATAAACGCACTAATGTTGTTCGGAATTTCAAAT
GTGATTTTTGTGGGAAAGCGTTCGAATTCAATAATGCCTTGCAAACGCAC
ATCAGAACTCACACTGGGGAAAAACCTTTTAAATGTAATATTTGTGAGAA
AGCCTTTTCTGATAAGGGTAGCTCAGTAAAGCATCAACGTACGCATACTG
GTGAGAGACCACACAAGTGCGATGTTTGTGAGAAAGCGTTTGCAAATGCT
GGTAATTTACGTTTACATTACATCCAACATACTGGGGAGAAACCTTACAT
TTGTAAAGTGTGTGACGAATCATTCACATGTCTCTACCTGTTGAACAAAC
ATTTATCTGTACATTCTGGCAAGCcttttgtttacagaaagaacgGAAAA
CTACACACTTGTGAAATTTGCCAGAAGACTTACACCAAAAAGAGTGGGCT
ACGAAATCACTATAAAGTTCACCAGCCAGGTTATAATCGTAATCCTCGCT
CCGCCCCATTGTTAGAGTGTACTGTTTGTGGGCATAAATGTAAATATCCG
TCCGATTTGAAGAAACATATGTTGTACAAGCACAATCCTGATGAGAGACC
TCACGAGTGCGATGTTTGTGGTAAAAGATTTGTGCAGCCTTCTAGTTTAG
CATTACACCAAAGAAGAGCTCACACTGGTGAGAAACCATTTCCTTGCGAC
ATCTGTGGAAAGAGATATTACTCCGTTAGTGATCGAAATGAACACATGAA
GGTTTCAGCCCACCCGAAATGTGATGTTTGTGGGCAAGCTTTTCCAAATC
GTAGAGATTGGAAGACTCATATGAAGACACATAATACTACAGGCCAAGAA
AGTGATTCAACTAAAGAGAAACCAACAAACCAGGGAGAAACACATGACAA
AACAGCTTctcaattgaaaaaatattccgTAAAGCATGCAAGAAAGTATG
GATGTAAATTGTGTGAAAAGAAGTACAAATACTCCCAAGATTTGAAAAAG
CATGTAAAGAAAGAACACGACGGTGGACTTGACAAAGAGAAAACTGATAT
CGCtcaattcaacataaacaaagaaaCTACACACGAGTTTACCACTGATG
AGATCCCAGCTACAGTGAATGAGCTGCAAACGGTCAGTGCCAAAGATCCA
CTCACACAGAAAAATATTAGCTTCTCTGAGGATTTCCAATCTGGTGCTCA
CAAGTGCGCTGTTTGTAGTAAATCATTTCCACAATCAGCTGAATTATGGG
AACATTTTCAACTTCACAAAAAGTAG Coding sequence (CDS) from alignment at sc0000094_pilon:489241..491016+ >XLOC_043480 ID=XLOC_043480|Name=XLOC_043480|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3552bp|location=Sequence derived from alignment at sc0000094_pilon:489241..491016+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGATCATTTAACAGAAGAATCGTGTACTCATTCAGACATCAACAAAGT
GGCTACAATTGAATTTTATCAATGTGGACCTTGCAATGAGATTCTGTATT
CTTTCAACAAAATGACTATGAACTTGTCGTTCCGCATGGACCAATGGAAC
ACTTTTGTGAAACAGTTGATGGCTAATTTCAATGTAAACGCAACAAATGT
TTCTCTACAAAATCTTGATTGTAAGGAATGTGGGCAAACGTTTCCATCAA
CCGAAAAATTAAGCCAACATATCAGTACTGATCCAATGGCCTGTGAGAcc
tgttttcaaatattttcatgtcaTGTGAAGTATAAAGAGCACTGCGACAA
CCACGTAAAAAAGAAGCCATTCCAATGCTACATTTGTAAGAAAGGTTTTA
TGCACAAACAATCCCTGGATAAACATATACCATTACACAATCAAAGTCAA
AACGCTGTTGTCACCAGAGTTGATTTACCATATCGAGTAACTGGATCTTT
GATAACGGGATATCGAAATAAACGCACTAATGTTGTTCGGAATTTCAAAT
GTGATTTTTGTGGGAAAGCGTTCGAATTCAATAATGCCTTGCAAACGCAC
ATCAGAACTCACACTGGGGAAAAACCTTTTAAATGTAATATTTGTGAGAA
AGCCTTTTCTGATAAGGGTAGCTCAGTAAAGCATCAACGTACGCATACTG
GTGAGAGACCACACAAGTGCGATGTTTGTGAGAAAGCGTTTGCAAATGCT
GGTAATTTACGTTTACATTACATCCAACATACTGGGGAGAAACCTTACAT
TTGTAAAGTGTGTGACGAATCATTCACATGTCTCTACCTGTTGAACAAAC
ATTTATCTGTACATTCTGGCAAGCcttttgtttacagaaagaacgGAAAA
CTACACACTTGTGAAATTTGCCAGAAGACTTACACCAAAAAGAGTGGGCT
ACGAAATCACTATAAAGTTCACCAGCCAGGTTATAATCGTAATCCTCGCT
CCGCCCCATTGTTAGAGTGTACTGTTTGTGGGCATAAATGTAAATATCCG
TCCGATTTGAAGAAACATATGTTGTACAAGCACAATCCTGATGAGAGACC
TCACGAGTGCGATGTTTGTGGTAAAAGATTTGTGCAGCCTTCTAGTTTAG
CATTACACCAAAGAAGAGCTCACACTGGTGAGAAACCATTTCCTTGCGAC
ATCTGTGGAAAGAGATATTACTCCGTTAGTGATCGAAATGAACACATGAA
GGTTTCAGCCCACCCGAAATGTGATGTTTGTGGGCAAGCTTTTCCAAATC
GTAGAGATTGGAAGACTCATATGAAGACACATAATACTACAGGCCAAGAA
AGTGATTCAACTAAAGAGAAACCAACAAACCAGGGAGAAACACATGACAA
AACAGCTTctcaattgaaaaaatattccgTAAAGCATGCAAGAAAGTATG
GATGTAAATTGTGTGAAAAGAAGTACAAATACTCCCAAGATTTGAAAAAG
CATGTAAAGAAAGAACACGACGGTGGACTTGACAAAGAGAAAACTGATAT
CGCtcaattcaacataaacaaagaaaCTACACACGAGTTTACCACTGATG
AGATCCCAGCTACAGTGAATGAGCTGCAAACGGTCAGTGCCAAAGATCCA
CTCACACAGAAAAATATTAGCTTCTCTGAGGATTTCCAATCTGGTGCTCA
CAAGTGCGCTGTTTGTAGTAAATCATTTCCACAATCAGCTGAATTATGGG
AACATTTTCAACTTCACAAAAAGTAGATGGATCATTTAACAGAAGAATCG
TGTACTCATTCAGACATCAACAAAGTGGCTACAATTGAATTTTATCAATG
TGGACCTTGCAATGAGATTCTGTATTCTTTCAACAAAATGACTATGAACT
TGTCGTTCCGCATGGACCAATGGAACACTTTTGTGAAACAGTTGATGGCT
AATTTCAATGTAAACGCAACAAATGTTTCTCTACAAAATCTTGATTGTAA
GGAATGTGGGCAAACGTTTCCATCAACCGAAAAATTAAGCCAACATATCA
GTACTGATCCAATGGCCTGTGAGAcctgttttcaaatattttcatgtcaT
GTGAAGTATAAAGAGCACTGCGACAACCACGTAAAAAAGAAGCCATTCCA
ATGCTACATTTGTAAGAAAGGTTTTATGCACAAACAATCCCTGGATAAAC
ATATACCATTACACAATCAAAGTCAAAACGCTGTTGTCACCAGAGTTGAT
TTACCATATCGAGTAACTGGATCTTTGATAACGGGATATCGAAATAAACG
CACTAATGTTGTTCGGAATTTCAAATGTGATTTTTGTGGGAAAGCGTTCG
AATTCAATAATGCCTTGCAAACGCACATCAGAACTCACACTGGGGAAAAA
CCTTTTAAATGTAATATTTGTGAGAAAGCCTTTTCTGATAAGGGTAGCTC
AGTAAAGCATCAACGTACGCATACTGGTGAGAGACCACACAAGTGCGATG
TTTGTGAGAAAGCGTTTGCAAATGCTGGTAATTTACGTTTACATTACATC
CAACATACTGGGGAGAAACCTTACATTTGTAAAGTGTGTGACGAATCATT
CACATGTCTCTACCTGTTGAACAAACATTTATCTGTACATTCTGGCAAGC
cttttgtttacagaaagaacgGAAAACTACACACTTGTGAAATTTGCCAG
AAGACTTACACCAAAAAGAGTGGGCTACGAAATCACTATAAAGTTCACCA
GCCAGGTTATAATCGTAATCCTCGCTCCGCCCCATTGTTAGAGTGTACTG
TTTGTGGGCATAAATGTAAATATCCGTCCGATTTGAAGAAACATATGTTG
TACAAGCACAATCCTGATGAGAGACCTCACGAGTGCGATGTTTGTGGTAA
AAGATTTGTGCAGCCTTCTAGTTTAGCATTACACCAAAGAAGAGCTCACA
CTGGTGAGAAACCATTTCCTTGCGACATCTGTGGAAAGAGATATTACTCC
GTTAGTGATCGAAATGAACACATGAAGGTTTCAGCCCACCCGAAATGTGA
TGTTTGTGGGCAAGCTTTTCCAAATCGTAGAGATTGGAAGACTCATATGA
AGACACATAATACTACAGGCCAAGAAAGTGATTCAACTAAAGAGAAACCA
ACAAACCAGGGAGAAACACATGACAAAACAGCTTctcaattgaaaaaata
ttccgTAAAGCATGCAAGAAAGTATGGATGTAAATTGTGTGAAAAGAAGT
ACAAATACTCCCAAGATTTGAAAAAGCATGTAAAGAAAGAACACGACGGT
GGACTTGACAAAGAGAAAACTGATATCGCtcaattcaacataaacaaaga
aaCTACACACGAGTTTACCACTGATGAGATCCCAGCTACAGTGAATGAGC
TGCAAACGGTCAGTGCCAAAGATCCACTCACACAGAAAAATATTAGCTTC
TCTGAGGATTTCCAATCTGGTGCTCACAAGTGCGCTGTTTGTAGTAAATC
ATTTCCACAATCAGCTGAATTATGGGAACATTTTCAACTTCACAAAAAGT
AG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000094_pilon | genome | sc0000094_pilon:489241..491016 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1333-1773:1336 |
| Aaloc | 1-1332:1 |
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