XLOC_043394 (mRNA) -

Overview


Name	XLOC_043394
Unique Name	XLOC_043394
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000367_pilon:150254..159031-
coding sequence from alignment at sc0000367_pilon:150254..159031-

mRNA from alignment at sc0000367_pilon:150254..159031-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043394 ID=XLOC_043394|Name=XLOC_043394|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8778bp|location=Sequence derived from alignment at sc0000367_pilon:150254..159031- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGCCAAAGTACAACACAGATTGAGTTTACGATATCCCCTTATGAG
CGGATTTCAGGTATGCACTTGTTCTGGGTCACATAGTCAAGCTTGAATGC
TTTGCAAGCGATCAGTATTCGATTTCAGCTCAAAACATTTCATGCTTTGT
AAGTGAACGTAAGTATTCGCTGAAACCTTCATACCACGAATTCATGATAT
GCACCATTGCAATGTCTTCCAGCACGGATTCAGCAGCTGATTGGTTGTAA
CGTGTGACGTATTGGCTGATTTTACGTCACTTACAACCAATCAGCTATTG
GGTCCGTGATGTAATGTCCGAAGACATTGCAATGGTGCATATCTTGAATA
GTCAATTAACAACGTCTACAATGTTGCTTGCTAGAATGACACTGCAGGTT
TTTCGCCGCTCAAACCTACGAAATGGGTTTGACTGGGGTTACTTTTGTAA
CAGATACGCAAAACAGCCTCTTTTTTTACTTTTTTACCTCGTAAAATTCT
TTTCGTGCTATAACTAGTCGCGATTATTTTTTCGTTTTGAAAATCAACAT
GTACCTTTCAAGTTTGAGGTCAGTTTAAGAGGATTTATATTTTTCAATAT
TTAAAAATGAAAAACTTTGATTGAAAAAATATAAAGAAAAAAACAAAGAA
GTTAAACATCCCTTAAATCCTGTGGGATAAAAATCTGTTTTGACCACAGA
TAGATATATAACTAGCCGTCACCCGGCGTCGCACCCGCCGAGGAGTAGAT
AAGCTGAACGCATCATAAGCCCTTTGGATAGTAAGTAAAGGGAATATTAT
GGACTGATTTATTCCCAAAGAACGAAAAATTGCCACTTGAGACCGATCAA
AACTCGAAAAATCGCAAATGTCATGTTTTGTGACGTCATTTGGGCCCTAA
GTGACGTCATCGAAAGGGTAATAAACTTTTCACCTCACTGAAAGTATTTC
TTCCCTTTTTCAAAGATTCTCTTGATGATTTCCAATCCAATGAGGGATCA
ATCATTGCTTAAATCCTGCTCAAACTCCAGATATTGGATTTTCAGGTTTG
GATGACGTCATCGGAACCAAAATGCCTCAGTTTGAATACATTTATTTCAG
AAAATCTCTATATACCCAGGATATACCCACTCTTACCCCTGCCAAATTGT
TCTCTATTAAATTCCCGATCCAATGAGGGGTCAACCATCTCGTAACTCCT
TTTCAATCTCGAGATATCGTCTTGTTAAGTTTCTTAGCTATCTTCCGTAA
AAGCCCGGGCTATAAAATATACGGTCTATCACGTTGCTATGTGAACGGAT
TTAAAAGAAAAATGGCGGATTCCCAATGTAAACAAAAACACAAGGAACCA
AAATGTGTCACAGATTAGAAAAAGTTTTTTTTCCTATTTCCCTTCCCGAT
TAACCATTTTACTTTTTATATAGACATATAATGATTAACAACTGAATACT
TTAAAAGCAAGAAGCTAAGCTCTAAGGCCAAAACCATTTACTACACAGAC
AACATGAATTTATTGAGGACAAAAAACTGGTACCGTATAAAATGAAAATA
TCAGCCGCTCAATACTATAAAGGAACCCAAAGAAATGGAAGATAGGATAA
TGTCAATATTTTTATAATGAGGTTTAGTGTTAATTAAAGAGGTGCTAGTG
ATAAATTTAATGTATATAAATCTGAATGAAATTAGAATGATTCATTTTAT
CATATGATGGTGTCAATTAGCCTCCGTCTCGGAAGAGGACTGGGCCCGAA
TTTGCGGACGTTTTCACAGTTTCACTTTCGTTTTCGGCTATACGACAGCG
TTTTCAAGCAGAAAGCAGAGGAAATCTGTGAAATTATGGCAGGGAATGCT
AACCTATTTTTCCAGTGTTTCTCAAGATTGGAGCAAGATTATTGTTCTAG
AAAGTTCATAAAGGCCTAATAGTTTCAGATTAGTATGATTTCATCAGAAA
AAACATTTACACCAAAGCTCCTTATTGATATGTGAAGGCTACCAAAAATA
GCAATGTCCTCCATCAGAACAACTTTAACATAAGGGACAAGGACNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GTGAGTCGGTCGCTCGGCTAAAAAGTGAGTCGGTCGCTCGGTCTAAAAAA
GAGACGCTCGCTCGGTCTACAAAAGTGAGGCGGTCGGTTGCTCTACAAAT
GATGCGGCGGTCTGTATACAAAGTGAGGCGGTCGGTCGGTCTACAAAGTG
AGTCGGCCGGTCGGTCGTGGAAACGACATATTGGATTGCCGCCCTACAAA
GACTACCAAATTACTTGAGTATACATGCAGCAAAAATTGCCACTCGCATT
TTCAAGAGGGCTAAAGTAAATGTCCATTGTCCGGCTTTGGTCTTTGTTTA
TTTGTTAGAGGTTGGTTGCGATAAGCCCCATAATAATTCGAAGAAACAAC
TTACAAATCCATAACAAAATGTTCTCTGGATAAGACAGGACCTAACATAA
ACATTCCCTATCCATGTAAACGATGACACCAGTGACCAGAGCAGAGAGAC
CAGATCAATCAATCAATATTAAGAAACCAAAGAAAGAAAAAGCAAAATAG
CTGTTGAGATTCTGGCTATTCAATGTTTTATTTACTTTTACGAAAATTAC
CAGTAAAGTAGAATTTCGAAAACGGAGATACGCTTCCGAACCGCGCGACG
TTTCCCGATCGGCAAGGAACCGTAGCATGTTTCCCGTGACTTGTCAAAAG
AACGTACTCCGTCAAAAAAGAAACGTAACGTTGTCCCCGCGCGGACTCGA
TTTAAAAATAAACTTGGAAAAAAATCCATAATGGCTCCCCCACGGCTCAT
AGAAAATTAGACTTTTAGTATATAGACTAAAAAAAATGAAAATTCAAACT
TTAGTTCCCTCCTCTGGGATGAAAAGGGACAAAATTTAAATTTTTCTAAA
ACCACACAAAACCTTAATAACTAACATTCTGGTCAAAATCTCGGAAATCC
GATAACGGTTTCAAAGGGTAGATACACATAATAAAAGCCATATATAACCA
TGGAAAAAAATAAGACATTGACACATAACATTTTTAAAACACGAAGACTT
CTAAAATGGTACGTATATGTTTATGATTTTATACGCACTTTTTGAAGTGG
AACACCACATGGCCCAATCCGGCAAAATTTTTAGTTATCAAACGCTTGGT
TAGGATATGGAACAATGGGAAAAAGAATAAACCTTCATGTTTGTTTAGGG
GTTAAACCTGTGAGGAAGAGTAGCTGCAAATTGATCTTTTCGTCAACAGC
GTGCGTTACATTTTTCGAGGACGGCATTTTGTCGGCTTGGAAAGTAATCT
ATCTTTTTTTCTTCTTTCAGGAACGAGTCACAGAGGAGCAGATAGAGGGT
AAGACACATGGTTGATAGTCAGGGTACTAAAAATCGACATGTATCCTGGG
GTGGGTGGTGCCAAATTATTACTTTTCATATAGTATCGGCCTGTGTACTA
TAATTAGGGTGTAGGGTTCAAAATGATTCTTTGGTTTTTGGTACTTTTAT
GGGGTCCAAAATGGACACTTACACTAGTACACATACTTACTTACTCTCGT
ACCCTGAAACCTCCCCCCCCCCCCCTGTAAGACATCGATAGTGAATAAAA
TAGAACGACATTACTCTACACTTTGAATGTGATCATATAGTATATTCCTC
AATAACAGTGTGAAGGAGACAAATCAACTGGGTGTCAATCTCAGCGGTTA
GATTCATAACTCTTAAATATTGGTAGCCAACCCGGGGGGGGGGGCAGCTG
GGCAAAAGGACCGACGGGTATGTGCGGGTCCTAAGGGTACCTTTTCCAAT
ATGTTTAAAATGCACTGTAAGGGTCGGAAAAACTAGAGATGCACTGTAAG
GGTAGAAATTTTAGAAAATTCTTGAAAAATCTAGATATTTTGACCAAAAA
TGCTAGAATTTTGACCAATTTTTGCACGAAAGGGATCGAAAATTTGGGGG
AAAATGGGCTCTAAGGGTATGATTTTCACTGATTTTTGCTGCACTGTAAG
GGTGCAATTTTAAAAGCCAATTTTTGGCCCGCACATACCGTCAGTCCGCA
AACCCAGTGCCCCCCCCCCCCCCCGGGGTAGCCAATCGGAAAAAGCTATT
TTCAGTGGATTAATTTTCGCAAAACAGATACTTCCAAAAGACGATTTTAA
TCAAAATTAATTTAATCTAATTTTCTCGGGAGTTATCTACGCGAATCAGT
TCCTTTTTTCAACTGTTTTCTTTCATTTTCCTAGGGGTATTGACAGAGCT
CTTGGTTTTTCGCAAGAATTAAATTTCGCGAATTTTCGAAAAAAACTCGC
CAAAGACTCCCCCGGTAAATAAATCCATTTAAGCTGCAAAAATGTAAATA
TATATATTTTTTTACAGAGTTTCGTGACGCGTTTATGGCTTTCGATAAAG
ATGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAATTCTAAGATCA
CTTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTGTCAATGAAGT
AGATTTTGATGGTACGGATATGGTTCAATATTCCTTAAAAATCTGAATAG
AATATTTTTTCTAATTAAAATTTTCCAAAAATGAAAGAAAAAATACCCCC
AGATATTCACCCAAGGATTAATTGTGCCCATTTTCGAAGTCTCTAGACTG
CCCTTAAGTATTTGAGACACACCAAAAGACGATTCTCAGATTCTAGCTCA
AACGAAGTTTAAAAAATTTAGTCTGCTTTGTCAAGTTAAAAAGCCACTTT
AACAAGCTGTAAAATTTCATTCGGCAAATTTTATAATGATAACACCCCCT
TTATCTTCTATTTAGGCAACGGAAAAATCGATTTTGTGGAGTTTGTAAAT
ATGATGCTATTGAACGGTGATCAGCTTGTGTGGAATGACAAAGACTTGTT
GGAGGCTTTTCACGTCTTCGATTCAGACAATAAAGGTTAGTCAGTCAGAC
CCAGTCAACTGAGGCTCTGGGAAATATATTCTTTAAAAAAAAAAAGAAGT
ATTGTTTGTGATTGATGTTGCAGAGTGCTCAATGAAAACCAGAGCCAAGT
AAAATATTAAAATATATCTTTCATCACAAAAAATTAAAAGAGTACACTAC
TCCGATTTCGTGCTACTGCACTTTTCAAATGTACAAAATAAAATTATTTT
ACTTGATTGAAGACTGTAAAAAATACTTGGGGCTAGCTTGCTAGGGGGAT
AAGTGTTGAATAATAGAACCGGGGCAGAGCTGATAGGTTACAAATATTTT
AAGTTAAGTTAAAAGTCTATGCTGTGAGGAAGGTTTTGACCCCTCTTATA
AGGTTTTCCTTACCACCCCCCTGAAAAATACTGGGAGTCGGACCTCTCTG
CATTCCATGTTTCGCCCATATAACATGATGAAGATGATATCGAACACTGG
AAGGCTGTCAGGATTGATAACCACTACACTACTGAGCCGATATTTAATAA
TAAGTAAGCTTTTATACATACATAAACGTAAACATTTTGGTTTTGATAAA
AATATGATTCAGACCCAGTTAAAGAATAAGAAGAATGGTGTAAATATCAT
GAAAGAAAAAAACAGATCTTTGGTAACCATTCTTTCCAATGACCAGACAT
ACATTTGTCTGTACACAGACCCAGTATCTACAGCTAATTCCAAAATTCAT
CGCCGTAGAGATGTCATTCATTGTCTTTTTTGATTTGAGATTCTTCAAAT
CGACTGCTGCGATGAAGTGTTGGAGAGAGAGGGGAGACGATAAGAGTTGT
GTTGCTATTAAAAAATCGTACTTCATCGCAGAGGTCTCCGTACGGGAATT
TTTTTATTAAACAGACAATGCGCACAGAGTGTACTTACAAAGCGATAGAC
GTGAGATACACTCTGGTACAGAGTAGACATACATAGGTAAAGATTTCCAT
ATCAGCATAGGAGGGCAAAAAGCTCTCCCCATAATAAAATACATTAACCC
TATTAGCCCCAAGCTTTTTTGACTTTGGTATCCCCAGGGGGGGGTAGAAT
CTACCACCCTCGATTTTTTTTGATCTAGAAGAGCTATGGTCATGAAATTT
GGTACAGATGTTCTCCATCATGAAACAAATTTCCAGGAAGAAAAAAAAAT
TGATGACGTCATTCAAAAACCGATGACGTCATCACAAAATTTCCACTTGT
CGGAAAAAAGCTCGAATATATGGTTTACTAAACTGTCCATTACAATCGAA
CCAATAAAGATATTTAGATTATGTTTAAAGATTCAGAAAGATAAAAGGTT
GTTCTTTAACATAATTGCCGGTTTTGAAATTTCTGCGAAGAGTTTTTCTT
AAAATCTATGCTGAAGATGAGTAAAATTTTCAAAATTTGATGACGTCATA
AATGATGACGTCATCATTTTCAATTTTCTTTTTTCAATTTTTCAAATTTA
TATTGTCAATGTCTATCACGTGTCAAAATTTGAAAATGATTGAATAAATA
GTTCAAAAGTTATCAGCACTTTAAAATTTTGAGTTTTAAGCGGTTTTAGC
TGGATTTTATGTCATGTTTCACAATAAAGCCATAAAACCTGATCTGAGCA
ACCTATGACCCTAAAATTTTGCACAAGTACTCTTAATAAGATTTTGTTAA
AAGTCAGAAAGTTTCAAGTTGTTTAAAAAATTTTTCTCAAAGATATTCAC
AAAAGAACTCCAGCGTGGTAGATTCTACCCCCCCCTGGGGCTAATAGGGT
TAAACTGTATTTTTGATTATAAGTTGAATAACTAGATTCAAATAATAAGA
GTTTCGAAGTGAAGAAAATTCCCTTTGGGCTTTGATTCAAATGACTAATA
CCTGATGTAATACCTCTGAAAATGACAATTCTATTTCCTATATGTATGAA
ACAGGTTATATAATGGCAGCAGAGCTGAAATACGTGTTGTCACAGATGGA
CGACGAGAAAATTCGAATTGAGGAACTTCAAGACATGATGCAAGCATCTC
AGATCGATCAAAACCGAAAAATCAATTTCAACGGTAAGATTTCTATACAG
TAAACTCATTTTACAAGTTCTTTATAATAAGAACAAACTATATACTTAGC
TTTAAAAAGTTAAGAACATCCGAACTCTTGAATTTTGGACGATGCATTTA
GAGTTGCATGAGACAGGGATTTTTTTCTGAACCGATTATGTTGACAAAAC
AGACTCGTTCAAATAAGTTACCTAAGGCAGATAGCGTGGATAGCCGGATT
TTTATTTATACCAATAATTTTCAAGAAAATTTTCACTTTGATTTTAGTTG
ATTTTGCAAGTCAGGGATACTAACTGGCGAGGAAACTCTCATGATATGGC
AAAACAGACAACACCGACTTTTATTCCTGCTTTTATTAATCTCTTATCTT
TCTTATTATATACAGAGTTCAAAAACCTAGCAAAACCTGACCTGAAGATC
CATTCACATGCGTTGGCACAACAACAACAACATAACCAAAACAAACAAAG
TCTAAGAGCGCTTCGATTCTTGACTTAG

Coding sequence (CDS) from alignment at sc0000367_pilon:150254..159031-

>XLOC_043394 ID=XLOC_043394|Name=XLOC_043394|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1188bp|location=Sequence derived from alignment at sc0000367_pilon:150254..159031- (Clytia hemisphaerica_ch_hm2_pilon)
ATGTCAGCCAAAGTACAACACAGATTGAGTTTACGATATCCCCTTATGAG
CGGATTTCAGATGTCAGCCAAAGTACAACACAGATTGAGTTTACGATATC
CCCTTATGAGCGGATTTCAGGAACGAGTCACAGAGGAGCAGATAGAGGGA
ACGAGTCACAGAGGAGCAGATAGAGGAGTTTCGTGACGCGTTTATGGCTT
TCGATAAAGATGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAATT
CTAAGATCACTTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTGT
CAATGAAGTAGATTTTGATGAGTTTCGTGACGCGTTTATGGCTTTCGATA
AAGATGGGAATGGTTTTATTACAACAAAAGAATTGGCCAAAATTCTAAGA
TCACTTGGCTTAAATCCTACAGAAAAAGAAATATGCAAGCTTGTCAATGA
AGTAGATTTTGATGGCAACGGAAAAATCGATTTTGTGGAGTTTGTAAATA
TGATGCTATTGAACGGTGATCAGCTTGTGTGGAATGACAAAGACTTGTTG
GAGGCTTTTCACGTCTTCGATTCAGACAATAAAGGCAACGGAAAAATCGA
TTTTGTGGAGTTTGTAAATATGATGCTATTGAACGGTGATCAGCTTGTGT
GGAATGACAAAGACTTGTTGGAGGCTTTTCACGTCTTCGATTCAGACAAT
AAAGGTTATATAATGGCAGCAGAGCTGAAATACGTGTTGTCACAGATGGA
CGACGAGAAAATTCGAATTGAGGAACTTCAAGACATGATGCAAGCATCTC
AGATCGATCAAAACCGAAAAATCAATTTCAACGGTTATATAATGGCAGCA
GAGCTGAAATACGTGTTGTCACAGATGGACGACGAGAAAATTCGAATTGA
GGAACTTCAAGACATGATGCAAGCATCTCAGATCGATCAAAACCGAAAAA
TCAATTTCAACGAGTTCAAAAACCTAGCAAAACCTGACCTGAAGATCCAT
TCACATGCGTTGGCACAACAACAACAACATAACCAAAACAAACAAAGTCT
AAGAGCGCTTCGATTCTTGACTTAGAGTTCAAAAACCTAGCAAAACCTGA
CCTGAAGATCCATTCACATGCGTTGGCACAACAACAACAACATAACCAAA
ACAAACAAAGTCTAAGAGCGCTTCGATTCTTGACTTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043394	XLOC_043394-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000367_pilon	genome	sc0000367_pilon:150254..159031 -

Properties


Property Name	Value
Aaloc	484-594:112
Aaloc	355-480:623
Aaloc	235-351:2662
Aaloc	91-231:3110
Aaloc	61-87:4159
Aaloc	1-60:8779

You are here

XLOC_043394 (mRNA) -