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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000046_pilon:1618073..1626052+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043361 ID=XLOC_043361|Name=XLOC_043361|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=7980bp|location=Sequence derived from alignment at sc0000046_pilon:1618073..1626052+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTTGTGGCAAAGAGAATTCGAACGGCTAAGCAGATAAATGATTTCGA
AGGTAAGTTAAGCAATCTATTATagatatatatgtgaagaaataagaatt
tctgtccaactatattcactcaggagatttgggtggcagagcagcatatg
catttcatccttattaggactcgcaGCACTGCATACCCTGGCTGGCTAGA
TCGATTTAGCCAGCATCTCTAAAccacaaaatcacttgtggttcaaactg
agagaaatactcttaggtgccaaataaacggtcccccccgcttgttaatt
tttcgaaaattttccaacccccccggaccttattaggacccccccgttta
ttaattttaaagaatattttcacttggctaaaagaagtccccttattttg
ctccaaaaagcctgattttagcctatatttaccttatttttgggttttca
taagtacaatttccaaccccccccggcaattaggtccccccccgtttatt
gaaatttcaaaaattttccaacccccccgtttattcgagcccccccgttt
atttggcacctaagagtagctAGTGGAGAGAAAACTGGAGGCCCTGatca
gtcgggtgtttaagataaaaactgcagttattgctcttttcggaaattat
tgccgaaaacggcaatttttttaacgatgaaatgctgaatcagcaaaatg
tgttgtccttttaagggaaaagatgtcagaggtgtttgaaaatagtaaaa
ttgcattgagaaaaaggtttttccgatttttaaaagtgattttttcaatt
tttcgttgctcaataacatgaaaagttctaaaataataagttaaaagatc
ctgcatcgttgccgaaacacagccagaaagagataacaaacccccgttgt
aaatttgtttacacatgactcgattttgctatctgcatttccaacaaaaa
ccagttgaaaacaaaactaaacgaggcacagcGGGCCTTCTTAttgcgag
ggtgtcaaataccacgttttcaataataaaatcaacttttatttgcaaaa
atggcaataattgccgaaaacggcagttttcatttatttacttttttatt
tttctgctgattcagcatttcatcgttaaagaaattgccgttttcggcaa
taatttgccgaaaagagcaataattgcagttctTATCTTAACACCCGACT
GCTGATGTCCTCTACTGGAGTTGGAGATATATAGCTTTATTCTGAACCTG
TTAAGCCTTTTGGCAGATTGTGGGTAGTTCACTAAGTATTCACTTTGTGT
CCAACCCCTATAAAGCTTGTGAAGATGGAAAATTTCTTCTGCTCTGGGAG
CTTTGTCGTtgtcttttaaatgttttttcttttttatagaatCTGGTATT
GTCATTAAGGTCAAGTTTGATGATGGTTTTATTTCAGAAAAGGACTCACT
TTCCCTCAAATTTACAACAACAAATAATATTGATTCCGTTCCCAAAGATG
CTAGCAGTAAAGCTTTTGGACAAATTGTAAGCAAGCAACTACAGTCAACt
actccaacttgggacgagtggtagcaacatgggacttgttgatatatCTT
GTctgtatttttacttactgttaaatcactttgacaacaaatttgttttg
atatctcCACCAAGtctatcaatcatacttctttgCTCCTGTTAGAGAGT
GCACAgacgatttaaaagcctactcagtgggaaagagaaatcatgtattt
tttaatacgcggttcattaaactcaaatcaaatgactttgaggtctcggt
gaaatggtggtggaatggctgTCCCATGTAgtttcagatagtcccaagtt
gaagcagttgacggtagctatgtctcaaactttttttataattcatGGCC
tagagttttaattttttcatcagcCCATCCCTAATTTAATTCAGAATATT
AACCCTTTTGAAGCAATatgagttcgattagttcagtcagtaaaaagttt
gattagttcaatgatattaaatcctaATATCTTTCCTTTCCTTGCTGTCC
CTTGCAAAATCCTTATTTTGGCACTCGACTACCATTTCAACAGTTTCCAG
ATTATTGTATATTTAAATTGTACTTTAATCATTTGATTGGTAAGACAAGT
TTGATTGATTGGGTCTGCTTTTAAAGCTAATCTGTAAACTATCATAACAT
TTAATCCTTTTATTTTAATTCTCAGGAAATTCCAGATGGTCGTCTAGTTC
CTGCTGATGAACTTGAATCAGGGCTTAATGGTTTTGCCTTATATGAAGGG
AAATTTTATATGTGCACCATATTGAATGTACGCAGTGGCAACAAAAGAAG
TAAtcaaactcttttttcatttcatatccATACAGCTTGTCCTAAAGAAG
CGCTCAGTTTCCATATATTGCAGTGTActagatttgagattttttgcaga
actaaattttgcagatttttgatTATTGGCAAAAATTACAGCCATTTGTA
AACTATTTAATCGTTGTTTTACTAGCTTGAAAAGTTTTAGGGATAAAGTT
AATATGCGATACGGGGCAAAATTGGGTCTGAGTACAGACAACACAAATGC
GCAAGCAAAACCTTAACCAGTGTTTGTGATGACAAGAACTGTCTACTCAT
ATATAGTTGCAGTTTTCACATAGCATTTTTATATAATACTCATTGATGCC
CTTAAAAGACATGTCACCACAACaaagaaatttgcaaaatttaaaagtgc
TCCATAGTGGAGTTCCATCATGTTTGAGGTTAGCATATAATTTAGCCCCA
GTTTTCtggttaaattcaaaatttattttgtaattgAACTATGTTTTTCT
TCCATAGAGAGTGATTCAGTGATGACCATTCCATCcaaatcaaaaagtcc
aaaaacaaaaaaatctaagaAAGGTTTGTCTGATCTGATGTAAATTTGTT
TATGACATTTGGGTCTAAATATAACCTCTTGGCTTTAGGGTGTGagcttt
tttcttcattttttacattcaaaatcTTGCCTTGATTTCCTTGTACTCAT
TACAATAGAGATATCAATTCTGGTGAGGACTATTGTTAAAAGGTCaaatt
tttccagaaaaatctctattgaaaaaTAATCTACACTGGAAAATCTATCC
TTTCCAATAAATAATTCTTGTTTCACAGATCCAGAAAAGGTAACTGGaaa
agatgatgaaaatgagGAAGGTTAGTTTGggattggaattttttttctaa
tttcaataTGATGTCAGCCAAAAAGTTACCTTATGAGAAGAAATTTGGGT
GATTTATTATAGATTTTTAAGTTGGACGAGAAGTGTTTTTGGGAAACCAC
CCacttttgttgaatattttagctgaaaaaggaggaaaaaattgtttcta
gaagaaatacagactaaaatgaaaaaaaagaaagagcaAGAATTGATTTT
GGCAAAATAGAtgcatttttttgacaattgaCATTTTTGACAGTTGTCCA
GGATGACTTTTGATTCGGGTAAAAATTACAGCCATTGcgtttttttatca
ttgttttcttGCTTGAGCCTTCAGTTAATTTTGTAATTGAATTATGTTTT
CCTCCCATAGAGAATGATTTGGTGATGAGCATTTCATCCAAGAAACCGAA
TAAGTCAAgtccaaaaacaacaaagtcTAAGAAAGGTTTGTTTGATCTGA
TGTGTAATTATTTATGAGATTTGGGTGTAAGTAATTAGTCCATCATAAGC
TgtaaactaaaatgaaaaacttttttttctataagaacaatatACAACCT
CCTGTCTCTAGGGagagctttttttatttttggacctacctccgggtacc
ccggtggaggtcctttaaattaacccatgtccgtccgtccgttcgttcgt
tcgtctgttgccagcttttctcaggattggctcattagttttttctgatt
tttggcataaagatgcaaaatggcaatgcccaaaatgtgacggagcccga
ttttcgaaaaaaaaaattttccggccgaaaataccggaaatatgccggaa
aaactggttttttggcattttctcgagattttatcattagttttttctga
ttttttgctcaaagatgcgtattaacaatgcccaaaacatggccgagtcc
aatttttgagaaaaaatttttttcggtcgaaaatgccggaaatatgccgg
aaatcgccgtttttctggattttcattggatttttatcttataattggtt
gttttttcattcaaaaacattattaatagcaatgcccaccatcaagcatg
tttcgattttcaaaaaaattaatttttgaagccggaactattcaaaaatc
gccggaacaacctattttcgccggaaagacagtatttcggAAATATGCTG
Gtaaaaccagttttttgacattatctcgaatttaatttttaaaattgaaa
ttttttgcagaaagatgcgtattcgcaatgctcaaaacatgaccgagttt
actttttgcgaaaaattcttgCCGTTAATCGcagtttttgcagattttca
tttggctttttccttatttctttgttttttcacacaaaaacattattgat
aacaaatcccaccattaagcatgattcaattgtcaataaaactgattttt
gcaaccggaactttctatttctattttccctactccccttccctcttccc
ccatcaacaatcaatgataagatTTAATGTGAAAGTTATGCATTTTTGCA
AAGCGCTATAtcgtctgactgattgttttcatttttctccttattgcctt
attatctagctttcatcatcaggtaggtccattcagcatgttgcttgttt
atgtTATCATTGTCTCAAAATCTAGGCCTGATTTTCTTTTAGAAGTCAAC
TTGTGAGGAATATTGtgaaaaggtcaaattttccataaatttctaaaaat
ctccataacggttaaaaaataaattcatactGGAATATTTATCCACTCCA
ATAAATAATTCTTGTTTCACAGCTCAAGAAAAGAAGTTAACTGAAAAGGA
tgacaaaaatgaagaaggttAGCCTGGGGTTgcgatttttttctaatttc
aataGAACTTCAGGCAAAAAGTTATATATCCCTAATGAAAAAACTCTGTC
TACGAAAAACTATGTCTCTTGACTGCaaaaaaaaTAGTTCAGGAATTTTG
AATGCTACATGATCAACATGAAGTGAATTTGTGCCCCATGAGGTAGCTTT
GAAATATACgcaaaaattgtgatttttcatttttcatcttattGTTAATA
TTGTTATTATTGAAAATCTTGACAGGGAAATCCGCATTTCACCAAAAATT
CACTCTTTTTCAGCTTTACGTCTAGAAGCTGAATTAAAgcagaaaaagaa
agaagatcTGAAATTACGACTTGATATGCAAACTCAAGAAAAACTCAAGG
CAATAAGGTAAAATAAATATACAAATGTAGACTGATCAGCCAGAAACTCT
GCATTTTTGCACTTGGAATCACCCATTGCGCCATCGTGAGAAAATTATGC
GctacattttcttcttttttcagccAAGTGACAGGACCCATTGCTACACC
TACCAAAAATGCCACTATTCCAATGTATGTCCCTGGAGGTAATGtatttt
caattctttgcaaaaataatgttttccaaATGTATTTATATGGAATTGTC
AAAACTACTTGATTAAAAAAGACGTAGGTACTGTATGGACaaaaaaaGTA
GTAAAAAGTTAGTTACAGTGTGTGATATATAGATTAATCTTTTTTAGGTA
GTCCCTTGGCCATGCGCCACTTTCAATCTGGATTCCAAAGTATGCTTTCT
GACACCTGTGGGGATTGCACCTTAAAAGAGGTTAAAATCCTGAAATATGA
AGAAGAAATGAGATCATGTAAttatcatatattttttttttgtcgcaTCA
ACTACAAATGGTTATAATGGGGCCATCCAGATAATATATGCATTGAAGGG
GAGAGAGGGTCAGCAAAAGCATATACATCTAATGTAAAAATGACATTAAT
TCTAATGTTTTCTATATACAAGCAGGATAGGGGCTCAAATATTTGTGTGT
ACTAAACAGAGAACCCTTATTTTTAGTTTAATTATAAAATGATCAGTAGa
catttttactattttcatttttatctattatcattttaAAGTGCGCAATG
GTTTAGAAATTACAAGGCAAGAGAATATAATCCGTAAGTCTTgtcatatt
ttgttttaaaagccAAAGTTTTTCCCATGATTAGGAAATTAGAGAGGCAG
AGAGAcaattgaaaactgaaaaaagtgTGGGTATAATTGAAAGTTAATTC
TTGTTGATGGAAACTTGAAAGTAGTTTACtatttttacagcaaaaattag
tttttcttaagatatcagtgcaattagaaattcaaaattttaaaaatgtt
ttactaTTTGATTATGTTGTCGCTTTCTCTTTAGTACACAGAAAGATTGA
AGACATGACAAAAAGCATTGAGGCACAAAATGTATGTTTGCTAGAATAAA
GTATCAGTTAGGTGATAAAGTTTATATTTGAGAATAAAagtctaaaattc
aaaagtttatgATGCTAGGAGTCTTCTCTGTAAACCTTTAAAGAAAAATC
AGAATTTAAGAAATAATATATTCAGAAGAATAGTCGTTTGAACATTTTTC
ACAAAGCAGATAGAGATATGATAAGGGGATACTTTAActttctctctttc
tctctctatTTTCCTACATGCTATACCTTTTATCTTGATTTACAGAATAT
TATCCGTGAATTACAATCAAGACCGCCACCAAACGAAACAAACGAATCGA
CTGAGGTGCCAGATGATTTTGACGAGTCTGTGACAGAGAATGTTAGTGTt
gctttttcatattttttctgtGCAAATcctattttaaggttttgaggTTA
TgattaaaattctgaaaatatggGAGTGCCGATCTCTTATAattgttttt
cttcatttttctcgttctttcttgtttttacttgtttgccgttctttcat
cattttcatATACAACTCTTACTTGGTGCTCTCAAATTGGAGCTTACAAC
CATTCTTGTtacatttttattataattgtCTTATTCTTTTTCTCAGGGAG
AAGACAAACATGAATTGGTCCGAAGTACCAAGGTCTTTGTTAACACGGAA
ACAATGACAAAGGCACATTTAATGCCACTTGCTGGGGATGTCATCCCATA
TCTATTGCGACGGTTAGTCAATCAGTTtgagtctagaaaaaaattcagaG
AGAAAAATATCCATCATTCCcaatgaattttcaaacttttctttatgatc
aaaattttttaatgagctTGGGCCTCAAAATGACCCCAAGATATACaaaa
aaaGAAAGCAATCATAAGAATTTCTAAATATAATAAGTGGTATTTTTGGC
ATTTGGCATCAAAAAGCATATCTGAGGTATTTCAATGCAAGATTTGATAT
ATTGGGGGATCCTTTTATCCATCACACATGTTTGAAATAGTTACTTCAgg
ttttttgtatatatttcaGACTATTTTCACTACAAAGACTGGCAGGTGCC
TCCCTCCTTGAACCAAAGGAGGGGTCAAAACGAATCAAGAAAAATGGACT
GAAGCCATTGCCAGAAAACATTCTGGTAGCTATAAGaggtaaaatttgtt
ttccttttgaaaaaatataagattataagtttttgaaaagtttttttttt
ttccatacaGTGAAATGGCTTACAATTCTATCGTGGAAGTATAATTATAC
TGATAAAggattttaagatatttgactTACATTTTTCTAGCATTTGTTAT
CAGCAATAAACTTAGACCCAAGAAGGTCTacctaaagaagaaaaagaaaa
gtaatggcgaaggagaggttgaagtagaggaagaagaggataaggagaTC
AAGACGGATAAAAAgggggggAAGTATATC Coding sequence (CDS) from alignment at sc0000046_pilon:1618073..1626052+ >XLOC_043361 ID=XLOC_043361|Name=XLOC_043361|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2760bp|location=Sequence derived from alignment at sc0000046_pilon:1618073..1626052+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCTTGTGGCAAAGAGAATTCGAACGGCTAAGCAGATAAATGATTTCGA
AGATGCTTGTGGCAAAGAGAATTCGAACGGCTAAGCAGATAAATGATTTC
GAAGaatCTGGTATTGTCATTAAGGTCAAGTTTGATGATGGTTTTATTTC
AGAAAAGGACTCACTTTCCCTCAAATTTACAACAACAAATAATATTGATT
CCGTTCCCAAAGATGCTAGCAGTAAAGCTTTTGGACAAATTaatCTGGTA
TTGTCATTAAGGTCAAGTTTGATGATGGTTTTATTTCAGAAAAGGACTCA
CTTTCCCTCAAATTTACAACAACAAATAATATTGATTCCGTTCCCAAAGA
TGCTAGCAGTAAAGCTTTTGGACAAATTGAAATTCCAGATGGTCGTCTAG
TTCCTGCTGATGAACTTGAATCAGGGCTTAATGGTTTTGCCTTATATGAA
GGGAAATTTTATATGTGCACCATATTGAATGTACGCAGTGGCAACAAAAG
AAGAAATTCCAGATGGTCGTCTAGTTCCTGCTGATGAACTTGAATCAGGG
CTTAATGGTTTTGCCTTATATGAAGGGAAATTTTATATGTGCACCATATT
GAATGTACGCAGTGGCAACAAAAGAAAGAGTGATTCAGTGATGACCATTC
CATCcaaatcaaaaagtccaaaaacaaaaaaatctaagaAAGAGAGTGAT
TCAGTGATGACCATTCCATCcaaatcaaaaagtccaaaaacaaaaaaatc
taagaAAGATCCAGAAAAGGTAACTGGaaaagatgatgaaaatgagGAAG
ATCCAGAAAAGGTAACTGGaaaagatgatgaaaatgagGAAGAGAATGAT
TTGGTGATGAGCATTTCATCCAAGAAACCGAATAAGTCAAgtccaaaaac
aacaaagtcTAAGAAAGAGAATGATTTGGTGATGAGCATTTCATCCAAGA
AACCGAATAAGTCAAgtccaaaaacaacaaagtcTAAGAAAGCTCAAGAA
AAGAAGTTAACTGAAAAGGAtgacaaaaatgaagaagCTCAAGAAAAGAA
GTTAACTGAAAAGGAtgacaaaaatgaagaagCTTTACGTCTAGAAGCTG
AATTAAAgcagaaaaagaaagaagatcTGAAATTACGACTTGATATGCAA
ACTCAAGAAAAACTCAAGGCAATAAGCTTTACGTCTAGAAGCTGAATTAA
AgcagaaaaagaaagaagatcTGAAATTACGACTTGATATGCAAACTCAA
GAAAAACTCAAGGCAATAAGccAAGTGACAGGACCCATTGCTACACCTAC
CAAAAATGCCACTATTCCAATGTATGTCCCTGGAGccAAGTGACAGGACC
CATTGCTACACCTACCAAAAATGCCACTATTCCAATGTATGTCCCTGGAG
GTAGTCCCTTGGCCATGCGCCACTTTCAATCTGGATTCCAAAGTATGCTT
TCTGACACCTGTGGGGATTGCACCTTAAAAGAGGTTAAAATCCTGAAATA
TGAAGAAGAAATGAGATCATGTAGTCCCTTGGCCATGCGCCACTTTCAAT
CTGGATTCCAAAGTATGCTTTCTGACACCTGTGGGGATTGCACCTTAAAA
GAGGTTAAAATCCTGAAATATGAAGAAGAAATGAGATCATTGCGCAATGG
TTTAGAAATTACAAGGCAAGAGAATATAATCCTGCGCAATGGTTTAGAAA
TTACAAGGCAAGAGAATATAATCCTACACAGAAAGATTGAAGACATGACA
AAAAGCATTGAGGCACAAAATTACACAGAAAGATTGAAGACATGACAAAA
AGCATTGAGGCACAAAATAATATTATCCGTGAATTACAATCAAGACCGCC
ACCAAACGAAACAAACGAATCGACTGAGGTGCCAGATGATTTTGACGAGT
CTGTGACAGAGAATAATATTATCCGTGAATTACAATCAAGACCGCCACCA
AACGAAACAAACGAATCGACTGAGGTGCCAGATGATTTTGACGAGTCTGT
GACAGAGAATGGAGAAGACAAACATGAATTGGTCCGAAGTACCAAGGTCT
TTGTTAACACGGAAACAATGACAAAGGCACATTTAATGCCACTTGCTGGG
GATGTCATCCCATATCTATTGCGACGGGAGAAGACAAACATGAATTGGTC
CGAAGTACCAAGGTCTTTGTTAACACGGAAACAATGACAAAGGCACATTT
AATGCCACTTGCTGGGGATGTCATCCCATATCTATTGCGACGACTATTTT
CACTACAAAGACTGGCAGGTGCCTCCCTCCTTGAACCAAAGGAGGGGTCA
AAACGAATCAAGAAAAATGGACTGAAGCCATTGCCAGAAAACATTCTGGT
AGCTATAAGagACTATTTTCACTACAAAGACTGGCAGGTGCCTCCCTCCT
TGAACCAAAGGAGGGGTCAAAACGAATCAAGAAAAATGGACTGAAGCCAT
TGCCAGAAAACATTCTGGTAGCTATAAGagCATTTGTTATCAGCAATAAA
CTTAGACCCAAGAAGGTCTacctaaagaagaaaaagaaaagtaatggcga
aggagaggttgaagtagaggaagaagaggataaggagaTCAAGACGGATA
AAAAgggggggAAGTATATCCATTTGTTATCAGCAATAAACTTAGACCCA
AGAAGGTCTacctaaagaagaaaaagaaaagtaatggcgaaggagaggtt
gaagtagaggaagaagaggataaggagaTCAAGACGGATAAAAAgggggg
gAAGTATATC
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000046_pilon | genome | sc0000046_pilon:1618073..1626052 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1243-1380:7843 |
| Aaloc | 1123-1239:7571 |
| Aaloc | 1006-1119:7147 |
| Aaloc | 910-1005:6796 |
| Aaloc | 865-909:6487 |
| Aaloc | 823-861:6194 |
| Aaloc | 703-819:5800 |
| Aaloc | 637-699:5575 |
| Aaloc | 544-633:5366 |
| Aaloc | 499-540:5025 |
| Aaloc | 424-495:3613 |
| Aaloc | 382-420:3181 |
| Aaloc | 316-378:2860 |
| Aaloc | 190-312:2226 |
| Aaloc | 55-189:1392 |
| Aaloc | 1-51:1 |
|
