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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000253_pilon:143940..150440- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043303 ID=XLOC_043303|Name=XLOC_043303|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6501bp|location=Sequence derived from alignment at sc0000253_pilon:143940..150440- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGAATCAGATTATCAATTTAAAGATGAAAATGAAGAAGAAATCAC
TATGGTTAGAAGGTGCGTAAAATGAAATTTCAAGTCCAGAATATTTTACA
TTTTATAGGAACTTCAATTTAGATACTCTCCCTGACTTTCTGTTTCTTCT
AGCGCTTTGTATACCCTCATGGTCTTGTGGAAACTTTTCTTATATATGTG
AAGAGCTCAGAGTCACAACGTTCTACACGTCCGGGCAGTTTTGATGCTAT
CCCAAACTTACTATATTTGATACCGATGTGGACTCTTTTGTATTAGAGTT
AAAGTTAGGACACTGGGATACACCGCAATTGTTCAGTGGTGAAATCAAAG
AGATCTGGAGAAAGAGAAAAGAGTAGACTTTGGAGGGTGGATCCAGGGTA
TACTTCGGGAAATAGCGTACTAGCACAGAAAGCCTAACTTTTATAGGTCC
AGCGGGAAATTTTCGTTCAATTTTAGCCGGTTTAAGAACATCCTGAAAAA
GACACCAGTGCAAAAATTAATTATAAATTCATAATGATGAAATGTTCTTA
TAAAAAATCCAATTTCTTTTCAATTGAAGTTTCAGATTTTAGTGATAAAT
GAATTTTATATTCCAAAGTAAAACATTAAAGTAATTAAATCTGGAATAAA
TTGTGACAGTGTTTTTTAAGAACGAAAGCAAACAACATAATTCAACAAAA
TATTTTGATTTAGTCTATGTTTCTCTTCTTTAAAGGTCGCCGACGTTTAA
ACACTTGAACATTAAAAAAAAAGTTTATCTAAATATTAGAGAAAATAATC
TTTTGTATCCCGTTTCCTTAGCGCAATTTTCCGGTAGTAAACTTCATGGA
ATATCTTAAGCTTTGCAATTGCCGTTGAAGGGACGTGGTGCCTCCAACGT
AAAATCTTGGGATCAAATATCTAATAGATGAAGAATCGAGGTCGGTCACA
CTCAATCAAATTCCAGCTGGCACGTTTATCTAACGTCCACAACGTCCATT
TAAGGCTAGATTATAACGTTGAAATAACGTTGTGATATTGATTCTGTCCT
GATATATACATCCTCCTGTCATACACCATCGTGCTATAGACCCGGTAGAA
GCCCCGCTCCACTGGAAAATTTCTTTCTCGTTGGAAATAGCCCAATATTT
CTGCCCCACTGGGAAATCGAGTTTGACTTAATCCCAATTTGATATCCAGT
GGGAAAAAATCAAACTCAATAATTTTTTCCATTGTATCTTTTGAGCTTAT
AACAATAAAATTTATCCCCATTGGGATTATAATGGAAAATTTCATCGCCA
CTGTGGGAAAAGTCCCACCGGGTTTGTGAAACAGGGGTGTTGTTTTAGAT
CCGGTGATACGCCAAATCAACACGCTATCTTCAACGAAGAAACTCAAAGT
GAAAAGAATCCACAAATTTTAGTTTTAAGATTCCCCATTTAGATTTCTAA
AATGCAATTTGTCATTGGCTCAGGTAAAAAGTATTCAAAGTAAGAGAGAA
AGAAATAGGAAAGCGAATAAGTTTAGTTGGACGAGTTCCAAAAATGTCAA
TAACCAAATATAAATATTTCTAAATAAACGACAATTTATTATTGCTTCAG
ATATGCGGTCGATGTTTTGGTAAATGCGCTATTTTCTTTGAAACAATATA
TTCAAACATCTTTCGGAAATTTATTTTAAAATAACGTTTCTTTTCCTCTT
TTCCAAATGGTGACTTGTAATGACCACACCCGAAAAACCAGGCTAGTTTC
AAAAATCACGCTCACACTTTATTTTAAAGCCTCTTACTCGGCGTTTATCC
TTAAGAAACCCCACATTACTCCCAAGTTCTTTTGAAAGGCCTTTTACATC
ATCAACCCGTTCGAGAAACGGACCAGGCACAAATGGAGTTTAATTGGGTT
CGTGACCACTAAGGGTCAGAGAATTAGGAAAATTTCAACTTTTTACCTCC
TAGTACCCCCCCCCCCCCCCGGGGATTTGGATATCTCTTCCAATTCAAGG
TGGAACCAATTAATAAGATGGCAAGGTTTTTATTTTTTGCATTCGGTGTT
GCGTGATTTTTGAGAGATTATTAAATATTTCATAAGTGTGGATTTGAATC
AGTGCTATTTTATATTTCGAGGTAATAAAAAAAGATATTAAATTTTCTAA
AACAAAAGAAACTTTGGATAATATTGATAATAAAAGACAAAGTTGTAAAA
AACGTTTATTAAATTCTTTTGCGCACTTGAAAACAGCAAGATATTTCTAT
TCTGTCACGATTTCAAATTAAATTTTATATCCAGTATATTAAGTTTCAAA
AATACGTTTATAATGTTGACAAAATCTATTGTCACTCGTCATAGAAAAAA
TATATCACGAATATATAACTTTTTTTATTTGCCAAGTCTTAAATCTTAAA
ACTTAATCAAAAAATGTCAACAACTTATTTTCTCTATATCATATAATCAT
TGATTTCAAGCTTAGTAGACATAATTTTGATTTTAATCCTTTTTTCTGAC
CAACTATCAAATAGATGGACACTTGGTGACTTTGATACCCTTGGGTACTA
CCCTGCTTCTCTCCACAAATACCCTTAACTAAAGGAGAATTCTGTCCTAA
TGAGAGTGAAACTAAATATAATTTGTATTAAGTGGCACATTCCCCTATTT
TCCCTCAATATCAAAATGACGGACCCTTATATGTACCCTTATTTATGCAT
TTAACGTGAAACAACCCTGAGGTTATTATTCTGCACATCAGTCCCTAGAC
GATGTTATCGTCCGTTACAGTGATAGCAAAGGCGGGAAAAAATGGCGGTA
TGGCGTTATGGCGGTATACTATACGGAAAAAAATCGGCGGGAGAGTTTCG
AAGAAACGACTGGCAACTCTACCGACTGTTAACTCTTTTCGGCAAAAAAA
CCCGTTTGCGAATTTTCTTCGGCTTTGGGCTTTTTTCTTAGATAGTGATT
CGTCTTAGACTATAACATAGTCTAATCAGTCCCTAGAACAAATGTTTTTT
AACAAACTAGAAAATAAGGATATATGACCCCGCAGTTTCAAATCTTTGTA
AAAAGTTCTTCTTAGATTATTGATTTTCAGAACAATTCCCCCAAACCAAA
TGAATTGTTTTGTTTGGGTATAATATATCAACTTAGGGAGTGGGTTAAGT
GATTCTAAAGATGAGAAGAACGTCACATAATTTTAAAAATTATTTGAGAA
CAATTTTGCAGCATTAAAGAAATAATTCACTTTTTTAAAAGTAGTTACCG
ACAATCAGTTTATCCAATTTGTGGTAATAAAGTCGGCATTTGCAAACAAA
TAATCTGACAGCAGGGATAGAAAATATTTTCCTAATTGCTGTCTCTACTC
CGTGTAAGATAATATTATTAAGCAGCTTTACAGAAGTATTTGAATTTGTG
GCTTAAATAAGTATAATAACTTTCGCTAATTCCAATTAGTAACCCATGAC
AACTTTGATTAGATAAGAATCAGGGATTGACTTGATTTTAATATGAAAAT
ATCAACAACATGAACGTGATAAAAAGAAAAAAGATATCTTTGACTATATT
TGAAAGTCGTCGTCAACTCGCAACTACTTGTCAATCTTATCTTCTATCTT
TTAAATAAAGTTCTTTTTAGTCATCGTCATGTGGGAAAATATTGTAAAAA
AGTTTTGACATATATCTTACATGATAAACTTTTCTAAAATTGAAAATATC
TCAAAAGCTTTCCGCACTTTGAAAACAAAACAAATATTATAATCTCATAG
CGCCGACCCCCTGTGTCGCGAGTATTTTTAATTAATGTTGACTTATATTT
CATTAAATATCCAGGGGGTATATTTGACTTCTGTCTATATCTAAATACTA
CTTTAAATTTAGGAGTGGCTTTCGGGATAAAGTACTCCAGTAAATGATTT
TAAATTTAATGTAATGACTACAAAATAAAGGAGATAAAGGACAAACCATC
ACAATATTTTAATTATAAAAACTAGACTCATTCTTAAAAACATAAAACTG
TTAGTACATACTTCATAAACCCTGTTAGAATACTATGCGTCGGCGGAGTT
CATCAAACATCCCTGGATACATTTATAAGCCGTTGTGTCCACCATCAAAA
AGGTATTAGGTATATATAGTCATTGCGTTCTAAATATGCCAGGTCTTATA
TTTAGAACGCCATATAGTATATTTAATTTCTATCGTCACGCAAAATCGAG
ATTTGCACAAAACATGTGATTTGCTCGTATGCAATTTCAATGTTTCTTCA
TCTGGATAAATCAGTTTCTTTGAAGATGCAACATTCGTCATTATTTTCGA
ACCAATTAAAAAAGGGTTTAAATTATGACAAATCTTTTCTGCCTTTCAAG
TTCTGCTTGACGAAAGCTGTTTTTTAGATGGATACTAATCACTAGGGTGG
TCAGTAGGGCGGACCTAATCTTCCGGCAACGTGCGTGAAATTGACAGACA
TGGATAAAGAAGATGAAATCTCGATTCGAATTCCAGGAAAATGAATAAGG
CTTTAAAATCTCAAATTAAGATTTTCTTTATGGTCTCAGCTCAAAGTCAC
TCTGGTTGTTTTCCCACCAGCCACTATTATTTGAATAATTTTTCCAGTGG
ATAAAGGGAGGGTATATTGACACTTGAAAAATTAGGAGCTGTCCTTTTGA
TGATGAATACCATTATTAATTAACAATCAGAGAATCATGTTCGAGTTATT
TTTTCTTCATTTTATTTTTCATTAAAACCACGACCGAACCGATTGACGTT
AATAGGAACTAACCTTTAATTACTCTAAACGAGGCTTGGCAGAAACTAAA
TTTTCTTCTTTTCTGTTCCCCTCTAATCTGTTCTCAATTTTTAAATTATC
CAAAAGATATCGGCTTTTAAGATAGTAACCCATCCTTTGTTGGCTGAGTA
AACACCTATAATTTAATCTATTAAATGACGCGTATACCTTCTCTATGACA
AAAAACTTTGCGCAAATTATATTAGAAAATTAGATATGATTATTTTTCTG
ATCTAAGAGAATTACTCTATGTGTGGGGTTGTTGGATTTTGAAAGATTAT
CATCAGTATTTGACGATAATTTGTTACCTTGATTCAAATTGATAAAATTG
TTGAAGCTTTTTAAGATGCTGGATTTTAGAAGGTACAGTAATAGAGAATA
TGCTAATTCATATTGTTATCAAGCACTCCAAATCGTGTTTAGATCAGTTC
AGCCTTGGAAGGAACAGAGAAGGAGATGAGAAATCTTGCGCCCCTCAAGA
ACTGGGGGTTAATTACTTAAAGTGGGCAAAAAGGCGATTTACTTCAGATT
TTAATATTTTAAGAATGTTGAAGAGCAATTTCACGTTTCACCTTTTTAGC
CTAAAAATTAAAAACAAAAATTGGGTGTTTTAGAGTTCATAAAGCCTTAA
CAGTTCTTATATTGTTCTCACATTCTGGCCATCGAAAACCTTTTTTCCTA
CATAATTTTTTCTCCCTTTCAATGAAAACTTCTTCTTTTTTCAACCTTTA
GATCAGACCATTACTCCAGTGACAACATCCCAGCTTCTGAGAAACCGCGA
TGGCCGGTCGCCGGAAAGAAACGTGGACGGCCAAGCTGTAAAGGGGCCGA
CGCCAAAGAATGGATGGATATTGAAATTTTCAAACTTGTCGAACTATGGG
AAAAGAAAGATATTTTATACAACACGAAGCACCTTATGTATTACAATAAA
GAGGAGAGGGATAACGCCGTGAAATATATCCAAAAAGCACTGAGTGAAAA
TGACATGCATGCTACTATAGAACAAATTACAGATAAAATGACTAATTTGA
AATGTTATTACGGAAGTCAGAAACGTAACATGGAGAACATGAAACTAAAC
GGCGGCGACGGGAACTACATCAGTCCTTGGAAGTTCTTCAACCATTTACA
ATTCTTAAACGGCCATTTCTTGCAACGTACTCCGACAGCACGCCGACGTT
ACATCGTCAACCATCATCAACATGACGGACCTGTCAATTACAAACTGACC
AATGGGACGAACGGGAAACCCATGGTTAAAAAAGAAGGTCACCTCCACCA
GTTTCCTTATGAATCCACACCAAACCCTGCTAAAATCACCATGGTGGACC
CATACATTATACACCAACCGAAAGCTTCTATGGTCGACCCTTACGCTAAA
CCGTACCCTGACTCGCCCACTGTTACCATCAAACCTTACAAAGGTCATGA
CAGTGGATACTGGGACGAGCCCCCTCATAAAGTCATCGGTCGCTCCTCAC
CACCCTACACTAATGGGGTAGCAGATAGGAAAAAAGCTGGCACCCCACCC
CATGCACCAGGATCAAGGCCCTCATCTACCGGCTCACCGAGAAGCGAAAG
TAACAGCCCTAAAATGAAATTGAAATCTGAAGATGACTGCTTTTCAGAAC
TTATTTGCAAAATGTTAAATCAAATACCTGAATCGGAGGAAAAAGCAATG
TTAAGACTTGAAATGCAACAAAAAGTGATTGCATTACGTTACAGATCATA
G Coding sequence (CDS) from alignment at sc0000253_pilon:143940..150440- >XLOC_043303 ID=XLOC_043303|Name=XLOC_043303|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2124bp|location=Sequence derived from alignment at sc0000253_pilon:143940..150440- (Clytia hemisphaerica_ch_hm2_pilon)
ATGGACGAATCAGATTATCAATTTAAAGATGAAAATGAAGAAGAAATCAC
TATGGTTAGAAGATGGACGAATCAGATTATCAATTTAAAGATGAAAATGA
AGAAGAAATCACTATGGTTAGAAGATCAGACCATTACTCCAGTGACAACA
TCCCAGCTTCTGAGAAACCGCGATGGCCGGTCGCCGGAAAGAAACGTGGA
CGGCCAAGCTGTAAAGGGGCCGACGCCAAAGAATGGATGGATATTGAAAT
TTTCAAACTTGTCGAACTATGGGAAAAGAAAGATATTTTATACAACACGA
AGCACCTTATGTATTACAATAAAGAGGAGAGGGATAACGCCGTGAAATAT
ATCCAAAAAGCACTGAGTGAAAATGACATGCATGCTACTATAGAACAAAT
TACAGATAAAATGACTAATTTGAAATGTTATTACGGAAGTCAGAAACGTA
ACATGGAGAACATGAAACTAAACGGCGGCGACGGGAACTACATCAGTCCT
TGGAAGTTCTTCAACCATTTACAATTCTTAAACGGCCATTTCTTGCAACG
TACTCCGACAGCACGCCGACGTTACATCGTCAACCATCATCAACATGACG
GACCTGTCAATTACAAACTGACCAATGGGACGAACGGGAAACCCATGGTT
AAAAAAGAAGGTCACCTCCACCAGTTTCCTTATGAATCCACACCAAACCC
TGCTAAAATCACCATGGTGGACCCATACATTATACACCAACCGAAAGCTT
CTATGGTCGACCCTTACGCTAAACCGTACCCTGACTCGCCCACTGTTACC
ATCAAACCTTACAAAGGTCATGACAGTGGATACTGGGACGAGCCCCCTCA
TAAAGTCATCGGTCGCTCCTCACCACCCTACACTAATGGGGTAGCAGATA
GGAAAAAAGCTGGCACCCCACCCCATGCACCAGGATCAAGGCCCTCATCT
ACCGGCTCACCGAGAAGCGAAAGTAACAGCCCTAAAATGAAATTGAAATC
TGAAGATGACTGCTTTTCAGAACTTATTTGCAAAATGTTAAATCAAATAC
CTGAATCGGAGGAAAAAGCAATGTTAAGACTTGAAATGCAACAAAAAGTG
ATTGCATTACGTTACAGATCATAGATCAGACCATTACTCCAGTGACAACA
TCCCAGCTTCTGAGAAACCGCGATGGCCGGTCGCCGGAAAGAAACGTGGA
CGGCCAAGCTGTAAAGGGGCCGACGCCAAAGAATGGATGGATATTGAAAT
TTTCAAACTTGTCGAACTATGGGAAAAGAAAGATATTTTATACAACACGA
AGCACCTTATGTATTACAATAAAGAGGAGAGGGATAACGCCGTGAAATAT
ATCCAAAAAGCACTGAGTGAAAATGACATGCATGCTACTATAGAACAAAT
TACAGATAAAATGACTAATTTGAAATGTTATTACGGAAGTCAGAAACGTA
ACATGGAGAACATGAAACTAAACGGCGGCGACGGGAACTACATCAGTCCT
TGGAAGTTCTTCAACCATTTACAATTCTTAAACGGCCATTTCTTGCAACG
TACTCCGACAGCACGCCGACGTTACATCGTCAACCATCATCAACATGACG
GACCTGTCAATTACAAACTGACCAATGGGACGAACGGGAAACCCATGGTT
AAAAAAGAAGGTCACCTCCACCAGTTTCCTTATGAATCCACACCAAACCC
TGCTAAAATCACCATGGTGGACCCATACATTATACACCAACCGAAAGCTT
CTATGGTCGACCCTTACGCTAAACCGTACCCTGACTCGCCCACTGTTACC
ATCAAACCTTACAAAGGTCATGACAGTGGATACTGGGACGAGCCCCCTCA
TAAAGTCATCGGTCGCTCCTCACCACCCTACACTAATGGGGTAGCAGATA
GGAAAAAAGCTGGCACCCCACCCCATGCACCAGGATCAAGGCCCTCATCT
ACCGGCTCACCGAGAAGCGAAAGTAACAGCCCTAAAATGAAATTGAAATC
TGAAGATGACTGCTTTTCAGAACTTATTTGCAAAATGTTAAATCAAATAC
CTGAATCGGAGGAAAAAGCAATGTTAAGACTTGAAATGCAACAAAAAGTG
ATTGCATTACGTTACAGATCATAG
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000253_pilon | genome | sc0000253_pilon:143940..150440 - |
Properties
| Property Name | Value |
|---|
| Aaloc | 64-1062:1000 |
| Aaloc | 1-60:6502 |
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