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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000042_pilon:1789735..1793301+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043269 ID=XLOC_043269|Name=XLOC_043269|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=3567bp|location=Sequence derived from alignment at sc0000042_pilon:1789735..1793301+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGGAACAAACCACTGGTCGCACTAAACTATTGACACGTTCGAAAAC
AGCTGGCAGTATCAAAGTTCATTCTTCAGATTTCACCAATGAACTTGTCC
AAACTGACCCTATTCACAAGGTAAATGAAATGGGCTTTTACATTTTCTTA
ACCATACAGGGGTTGGACGAACTGGATACCCTCctggaaaaaagcaaaat
ttgcaaaaaggaagttttagaataactttaagcggaaaaagaaagGCGAG
AGGAAAAACGACAAAATCTTTCTTTAGATCCCCTGGAGATCTTTCAGAAT
CACTCCCTGTAAAAGTTCGTTCACCCCCTTTTGGATATAAAATGGTATGG
CCAATGTATTAAGAACGGCCTACGTAtccttttttcatttatttactctT
CTGTCATATAAGATCGAGCTTTAAAAAGTTAGAGCAATGGTAATGTTCTC
CGAGTGAGTGTAGTGCAATGATTCACATAGACCGACTCTACAACTTTACA
TCCCTATTTCTTACGTAAAGCGACAATCTTTTGTCATTCATAGTACATTT
CCAAAGATGATTCCAACATTACACCGTTTCAACCAAATTACTCTTGTAGT
AATGTGAACCTTCGGCGAAGTAATTCTTCAAATTATATTGGTTGTTGGCT
CAGTGAAAAGTCAATCAGAAACCTCCAGGTATTCTTTCTTTGAGTAATCT
GTCACAATAAGCCATTATGGTTTATTAGAGCTAAACGATGATTTAGAGGT
GAATTCCAATCTTTTCAAAGTAGTTTTCTAACCCCGTATCACTATTCGAC
TCTTTGTataagtttttctttcttcttatcTTTCAGAAAAAGACAGATTT
CGAATCGAAAGAGATGGCCAACATGTATCACAGTTTACTCGATAGCGAAG
AAAGACTTCAAAAGGTTAAGATTATGATTTGTAAAACTTACCACCAGATT
ATCATTCCTGAgctgattttttcactgttaacATTTTGCTGAAACTTGCT
CTCGACTAATTTCAAGTTCGATGAGATGATAAACGACtagtgattttcaa
attttcttcttcttcgtagcagcgacgatgagttgccaacaaaatattag
cttatttttaaattgtaaagtagcgctgacttttattagcctttgttgct
accttttcgtcaacatCATTACATTACATTCTTCTTTAGGATTTAGATGA
TATTATAACATATGATCGAATACGGAAAGATCGCAAATTACAATGGCTCT
TACAAAAGTGGTACGAGAAGACCTACATTCCACTTGATGTAAGAATAACT
CTTGGCTTGATttattgtttgttgttgttttcacGAATATTAGGCGTTTT
TACATTCGCTGCCATCTACAGTTATACTCGTAATAGATGAGTGACCGGCA
GTAGTTCAGAGGTCATAATTATGATACTTGTGCCTGCTTTTCTTTTGTAT
TCTATGCTTTCCGGAAACTTTGTGAAATTCGGTGAGCAAAATTGTGGCCA
CAAGGGAGCCTCTGAAAAGGGCACACCAGTAAACATGTTAATAAAAGGAT
CCAGAAAtcataatattttttatattccaCGCATTCCGTTAGCCATTAGT
CTTTTGATACATAATGGCGGTCCTTTAATATGATTATTCCAGAAAGTGAA
ACGATTTctaatttatttctaattttttttctctatagAATAAGATATGC
CAGGAAATGAACGGTTTTCAATGGCAGAAATTCgatcaagaaaaaagaaa
acaattcatCAAATATCTTAAACATCGAAATGAAAAGGTAACGACATGTC
ATAAAGTCATGAAATCATGACTTGCTCGTGGAAACTCACAGTGATTCAAT
ATTTATTGTGTGAGCTGCAaacaaaactttagaaaaatatttgtacGAAA
ACACTATTACTACACACTCATTAATTCAAGTTgagaaatttaaagccaat
tgtAAGTATTAATTTATAAATCGCATTTCGTGCTTTTCAATAATCTTTAT
TCCTTTTCCGTACAGGGACATATTTTCCTGGACATATATGAAGAAGCAGA
ATACGATCCAATGTCACTCAATAAGAAACGACCTGGACCAATAAAGgtat
tcattaatttttgaacaATTCAACGACTTAGACTCGCGTTGcgtttggtt
tggttttgtaaGCGTTTAATTGTTGTCTGATTAGTAATTTTTAGTAATTT
CGGAGAGGCAGAAATGCCTGCGAAGGGAAATTCATCAAATAAATGTTGTT
TAGTGGCAGATAAGATTGGAAGTTGGTTAAAGTTGGTCATTAAGATAATA
TAGTGATGGTCTTCGAAAACCCGAAAAATCAACTGTAAAGTGCTATGCAT
AtgttagattttgatttttacatttCAGATATTTTGAGGAAGTTCTTCTT
TAAACACTATTCCAGGGGAAACATGTAGTAAATCCATTAGACTTAGTAAG
ACTTCGACCAAGAAAAGAGTGCAACTTTTGGTTTTTATATTATAAAGCGC
ATTTACGTAAGTAAAAGGATAGAGAGAAATAAAACGAAACTGTGTTTTTC
AACACAAGGCGGTGACGGAGAAATTGGAAGATCCATTACTTCATCAACAA
TACAAAAGAAACGAAGAAGATCGTGTGGTGCATGCATGCGATAATGGTAT
CATGCTCACGGAGAAACAGATCGAGGAGAAGAGATTACCTAAGAAACCGC
TCGTCCCGCTTGGTAGACACGATACGGAGTGCAGTACATGGCTAGATATG
AAACTCTATGATATTCAAAGTGAAGTTCGACTTCGAAGCCAGTAAGTACA
AAGTTCTTATGTCTGATCTGTTTTTTACTCTACAAAATTATCCTCGAATT
AATCTAAATACGAATTCGTCTTCTatcccaatttttcattgaTGTCCACC
CAATAGAACAGTAAgtccttatttaaaaaatatatatactattaaatggg
ctattccagaaatagtctataccccctatgttgtGGAGGTGATCAGGGTg
ctctggaaaataaaaaatccagggtggtctgtttttttggtcagtaaaat
cgggttgaaatccagggtggtccaaagaaatgggagaaaaaatccaaggg
ggtcctgaaaaattagaaaaaatccaggggtcacctttttaaaaaaagat
ctcctcaacatagggggtacaaattttttctggaatagcccaatggaTGG
GACTAAATATTCCACATATTAGATTTGCAGTGAGTTCTTTGTAGATTGTT
CAGACCAACCCTGATATGAGATGTCCTATGTGTGCTAGACAAGCGTTTTG
gatttttatttccaaaagaaCTATAACCTtgaatattttctgtttttata
aatttcaatttCGTGTTCAATTTCTAATTAGGACTCTTGTGTCATTCTTA
GGGACCGAATTTACGGCGtacgaaatatttcaaatacctGTTTACACGAC
ATCAGTATGGAAGAAAAAACTGCGGACTTCTCACAACAAAATCCGAATAC
TGGTAAATCCATCTGGAAAAAACGACGACAGTTTACTAGGAGACAAGACA
CTTTAAAATTGGTCTAA Coding sequence (CDS) from alignment at sc0000042_pilon:1789735..1793301+ >XLOC_043269 ID=XLOC_043269|Name=XLOC_043269|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=2022bp|location=Sequence derived from alignment at sc0000042_pilon:1789735..1793301+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGTTGGAACAAACCACTGGTCGCACTAAACTATTGACACGTTCGAAAAC
AGCTGGCAGTATCAAAGTTCATTCTTCAGATTTCACCAATGAACTTGTCC
AAACTGACCCTATTCACAAGATGTTGGAACAAACCACTGGTCGCACTAAA
CTATTGACACGTTCGAAAACAGCTGGCAGTATCAAAGTTCATTCTTCAGA
TTTCACCAATGAACTTGTCCAAACTGACCCTATTCACAAGTACATTTCCA
AAGATGATTCCAACATTACACCGTTTCAACCAAATTACTCTTGTAGTAAT
GTGAACCTTCGGCGAAGTAATTCTTCAAATTATATTGGTTGTTGGCTCAG
TGAAAAGTCAATCAGAAACCTCCAGTACATTTCCAAAGATGATTCCAACA
TTACACCGTTTCAACCAAATTACTCTTGTAGTAATGTGAACCTTCGGCGA
AGTAATTCTTCAAATTATATTGGTTGTTGGCTCAGTGAAAAGTCAATCAG
AAACCTCCAGAAAAAGACAGATTTCGAATCGAAAGAGATGGCCAACATGT
ATCACAGTTTACTCGATAGCGAAGAAAGACTTCAAAAGAAAAAGACAGAT
TTCGAATCGAAAGAGATGGCCAACATGTATCACAGTTTACTCGATAGCGA
AGAAAGACTTCAAAAGGATTTAGATGATATTATAACATATGATCGAATAC
GGAAAGATCGCAAATTACAATGGCTCTTACAAAAGTGGTACGAGAAGACC
TACATTCCACTTGATGATTTAGATGATATTATAACATATGATCGAATACG
GAAAGATCGCAAATTACAATGGCTCTTACAAAAGTGGTACGAGAAGACCT
ACATTCCACTTGATAATAAGATATGCCAGGAAATGAACGGTTTTCAATGG
CAGAAATTCgatcaagaaaaaagaaaacaattcatCAAATATCTTAAACA
TCGAAATGAAAAGAATAAGATATGCCAGGAAATGAACGGTTTTCAATGGC
AGAAATTCgatcaagaaaaaagaaaacaattcatCAAATATCTTAAACAT
CGAAATGAAAAGGGACATATTTTCCTGGACATATATGAAGAAGCAGAATA
CGATCCAATGTCACTCAATAAGAAACGACCTGGACCAATAAAGGGACATA
TTTTCCTGGACATATATGAAGAAGCAGAATACGATCCAATGTCACTCAAT
AAGAAACGACCTGGACCAATAAAGGCGGTGACGGAGAAATTGGAAGATCC
ATTACTTCATCAACAATACAAAAGAAACGAAGAAGATCGTGTGGTGCATG
CATGCGATAATGGTATCATGCTCACGGAGAAACAGATCGAGGAGAAGAGA
TTACCTAAGAAACCGCTCGTCCCGCTTGGTAGACACGATACGGAGTGCAG
TACATGGCTAGATATGAAACTCTATGATATTCAAAGTGAAGTTCGACTTC
GAAGCCAGCGGTGACGGAGAAATTGGAAGATCCATTACTTCATCAACAAT
ACAAAAGAAACGAAGAAGATCGTGTGGTGCATGCATGCGATAATGGTATC
ATGCTCACGGAGAAACAGATCGAGGAGAAGAGATTACCTAAGAAACCGCT
CGTCCCGCTTGGTAGACACGATACGGAGTGCAGTACATGGCTAGATATGA
AACTCTATGATATTCAAAGTGAAGTTCGACTTCGAAGCCAGGACCGAATT
TACGGCGtacgaaatatttcaaatacctGTTTACACGACATCAGTATGGA
AGAAAAAACTGCGGACTTCTCACAACAAAATCCGAATACTGGTAAATCCA
TCTGGAAAAAACGACGACAGTTTACTAGGAGACAAGACACTTTAAAATTG
GTCTAAGGACCGAATTTACGGCGtacgaaatatttcaaatacctGTTTAC
ACGACATCAGTATGGAAGAAAAAACTGCGGACTTCTCACAACAAAATCCG
AATACTGGTAAATCCATCTGGAAAAAACGACGACAGTTTACTAGGAGACA
AGACACTTTAAAATTGGTCTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000042_pilon | genome | sc0000042_pilon:1789735..1793301 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 847-1011:3403 |
| Aaloc | 613-843:2559 |
| Aaloc | 532-612:2016 |
| Aaloc | 433-531:1689 |
| Aaloc | 334-432:1190 |
| Aaloc | 256-333:837 |
| Aaloc | 121-255:544 |
| Aaloc | 1-120:1 |
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