XLOC_043212 (mRNA) -

Overview


Name	XLOC_043212
Unique Name	XLOC_043212
Type	mRNA
Organism	Clytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence

The following sequences are available for this feature:

mRNA from alignment at sc0000072_pilon:118160..124574-
coding sequence from alignment at sc0000072_pilon:118160..124574-

mRNA from alignment at sc0000072_pilon:118160..124574-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_043212 ID=XLOC_043212|Name=XLOC_043212|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=6415bp|location=Sequence derived from alignment at sc0000072_pilon:118160..124574- (Clytia hemisphaerica_ch_hm2_pilon)
AACCTCGCACCCGCAAACGTGGTTGTGGATTGTGAAAGCAGAGGCTACAC
TTTGGAAGAAGTTCTCGGACAAGGATCGTACGGAACAGTTTATCAAGCTT
CTTCCAAAAGATTTGATCGCCCTGTAAGTTAATCATTTGTCTTTTATTCT
ATCTTATAAGTTGTCTGTGCTCTTTGCCATGTATATTGAAACTGAATTTT
CAGTTAACTGGTGGACAAAACATACTATCTTTCCAACAATCCTTAAACGT
CTTGTTTCTTGTTTCTTCAAATCCGCTATTATTGTTAGGTATTATCGTGA
TTGTGATTGTATGTAATCAAAGTAGAGTCAGACCATGTTTTTAAAAATAA
AAATCTCATATCAGTGCCTACTACTAGGCGCTCTGATATAGTGATCATTG
ACCTTGGTTACTTCACAGGCGAGGTTTGATTCCCACTCATAGCAGTTCAC
TTGACAAGTGAACGAACCTTTGCACAGGTCAACTCAGGGTGCTGACTGAG
CGTTCATTGAATACATTTATAGTTGTGAAAATGGACCTTAAAGCCTCCTG
CAATTTAACCGAATAGAATAGGAAAATACTAAAGGCTACCTATATAGAAT
ATGTACAGTATGTTCCATCAAGATGTATTTGCATGTATCAAACCCTATTT
GAAAACTTTTGAAAAGTGTTAGCGTGAGACGGAAACTTGCAAATTCATCT
AGAAAATGGAATCATTTCTTTTCTAGGTTGCTATCAAAATGATCGACCCG
AAAAAAGCTGGCGAGGGCTATATGGAGTATTATTTACCCAACGAATATAA
GAGTTTATTGGCAGTCAAGGGATCACAATATGTGGTAAGTATATCATTAC
AAATTAACTAGTGAATTGTAGAGAGAAGCACGATCATCCATTGTTATGTT
TGATAGGGTAATCGTATTTGACACCCGTGTCTCACAGCCCCGATGAGAAC
TTTTCCCACAGCGGGATAAAGATTTCTATCGCAATCCCAATGGGGATAGA
AATTCTATTGTACCAAGTTAAGAACATCCAGTAGGAATTGTTTTAGATTG
TAATTTTTTACATTGATTTTAATGCTATCAAAGTCAATCTCCCGTTTGGG
CTAATTATAGGGTATTTTTCCCACCGGGGACGAAATTTTAGCCAAATTTT
CCTATCGGACTGGGGTCCCAAGAAGAGGGTCTGTGACACAATGGTGTTAT
ATGGCCTGCAGAAACTTTCTGATTAAAATAATCTTTTTGTGTAATTATTG
TACCAAAGTTGTAATATCACGGCTCTTACGTTGAAATTGTATTGTTTTTC
TTACTAAAAGTCAATAACTTGTAATTTAAACTTCCCAGATTTGGAAAATA
TTTAGATAAAAATATTTTGAGGTTTTGCTCAGGACAAAAGAAGGATTTGA
TATGACACATGTCTCAATCCATCTGATTATACCTTAAGTTTGGGGATATG
TTTCATGGAACCTCTAACAAAAGATGCGTAGAATAAGTGAAGAATAGTCT
AGAGTCACGCAACACGTCATCCAAATGGTCAAAAATACTTTATAATGTGT
TCGATTTCCATTAAGATAGTCAACCATGTCGTTTTATGAACCAACTACAT
TCGCTGAATACAATGACTTTCCAAACCACTCTCCCGCAGCAATTTCTATT
TTTATGAGAACACTCAAGCAATATTCCTGCGTTCCTGTATCCAAGGAAAG
ACATACGCTTGCCAATCTAGATTTCCTCGAAATTAGTGTGTCTAAAATTT
CCAAATAAAAGCATTGAGGCTAGTTACCTTTTATTCTTCTGTTGGCAAGA
AGGAAAGAGTTTTTGAACAATGATTTTTCTCTATACAGGTACAAATATTA
GACGTCTTCAGAGGTTCCACAGGAATCGTTTATTTCGTCATGGAGTGCGT
CGAGGACGGTGATCTATATGATTATTTGGAGAATGAGGCTTTGCCAGAAA
ACGAAGCTCAAGACATCTTCAAACAAATCTGCTTGGGGATCAAGCACTGC
TTTGATCGAAATATTGTTCACAGGTAATTTGGAAGAGTACCACCATTTTC
TTACTCAAGACTGAAATTATACCTAGAATCTTCTTTTCCTAACTGCTGAA
TAATCCAAAAGTGAAAAAAAGACTATAGAGGTATTGCAAGCTTTTAAGTA
ACTAGAGAACTAGTCAGTCTTCGTAAATGTTAATTATGATAAGCATCTTT
TACTCTTGTACCCTCTCGTATAATCATTAATTTTTCAGAGATCTCAAACC
TGACAATATTCTTCTTGCAGAAGATGGAACTTGTAAACTAACAGGTATGT
AGATTTTCAAAAATTCATCAATTCTTTCATAATTTACACAAATCTTAGGA
CGTCTTGATAATGACAAATTCATCTTACGAGGCATTTCGCTTTTAGTTTG
CACTCGCTTTTGCCATCTTGTGAGAACCACTCTGTAGTCTACGCTAACAT
GGTTTCCACATTGCGACAGGAAAAAAGGTTGCACACTATTACTTAGACTA
TATATGCTATAGTCTAAGACAAATCACTATCTAAGAAAGAAGCCCAAAGC
CGAAGAAAATTCGCAAATGTTTTTTTTGCCGAAAAGAGTTTACAGTCGGT
AGAGTTTGCCAGTCTTCGAAACTCTCCCGCCAATTTTTCTTTCTGTATAC
CGCCATAACGCCTTATCGCCATATTTTCCCGCCTTATCACTGTAACGGAC
GATAACATCGTCTAACTATTACTTAAATTACTTTATTAAAGTTACCAAAA
ATTGATAACGGAAATTCTCATGATCTGTTTTTTGTTTGCAAATTTTAAAA
CAACATTATCATTTTTTATTTAGACTTTGGCTTCGCAAGGAATGTTGAGG
ACGGAAAGCTCCTTTGGGATCGATGTGGTACCAAGGAGTATATGGCACCA
GAAATCATCAAAGGTGAAGCCCGGTATGATGGAAAGGCATCAGATCTTTG
GAGCTTGTAAGTCAACCAAGTACCTCTTATAGCATAAAAAATCTACACAC
TCTGGACAGCCTTTGACGGCCTTTAATCTTCTCTTTGATAAAATTCGTAT
CTAGCGAGAACCTGACCTAACCCGGAGAACTGCTTTTTCGCGTTACATCG
AACAATTAAAAAAATCCTACAAATTTAAAGTGGATATCTTGCTAAATTTT
AAGTTGTCTTTTAAATTCATAATAACTGTTTATTCTAGAGGGATTATTTT
GTACGAATTGGTCACCGGTCAACGTCCCTTCGATAGCGAAGAGAACGATA
AACTGTTTCTGAAGGAACAGCAATTGGGCCCAGCATGGCCACCAAGCATG
TCTATCGGTAAGTGAAACTTAAAAACCACAGGTAGAATTTCCTATAATAA
ACAGAACCTTTTTCGGTGGAGAAATATAGTCTTGTGACATAATTGAAAGT
AGGAAACCTTTAAAACTCTTATCTTTGAGAGGATGAATATGACACCCCTG
TCTCACAGCCCCGGTAGAACTTTTTCCTCAGTGGGGATAAAAAATCCTAT
TGAAATCCCAATGGGGATAGAAATTATATTGTTCCAAGGTTAAAAAATCC
AGTCAAGATGGTTTTAGAGTACAATTTTCCAACTTTGAATTTCTAATGGG
GATGAAAACAAAGTCAATTGCTCAGTGGGGCTGAAATTTCAGGATGTTTT
CACACTGGGGGACGAAATTTCGGCCGAATTTCCCAGTGGGGCTAGGGTCC
CAGCGGGACTGACACAAACTTTTTGACTACAAAATGATGACGTCATTTTT
AAAGTTCATTAGAAATGAAGGGCTCGAGAATAGCTGATTGGCAAGAGTCT
GAATAACAGGAAATCTATTTGTTTGAAAAGTTTTCAGATTGATTGCTTCT
TATTCAAGGTGTAAGTTTCTGAAGTTTTCATTCTGATAAACACCCCTTTT
ATTCCAGCATGCAAAAACTTGATAACATCATTGTTGAATCAAGATCCAAA
AAGACGGCCATCAATTGAAATGGTTTTAAAAAGTCCATGGTTATTTGAAA
CGAGCTTGCCAACAGCAAAGGTAATTTAAAATAACATATTGAAAATAAGA
TCAAAAAGTGCTCAAGCTAATTTTGAAAAAGGCAAGCAAAAATATCTAAA
AAGGAAAGTATTAACTTGAAATTGCTATTACGTTTGTACTACCAATATAT
AACCTGAGATCAGATTGTGATTGTTTTCTGCCCACCACGCTGAAAGCTCT
AAAGGGATGGGTGAAAACTAGACGATGCTATCGTCCGTATAATATGTTAT
TATTATATCACATAGTTTGTATATTATAAGGTAATATGTTTCGCGGCGGA
TAGAGTCTGTGTTTAAGACAACAGCTACTCCCGTAAAAAATTCCCGTCTC
ACGTTCGTTCCTCTTAGATGAAACTCGTCTTAGACTATAGCATAGTCTAG
GTGAAAACATGACAATCTGACGAATATGCAATCTCGAAATCGTAAGGACC
GCGTTCTTCTAAAAGGACTGGGGATGACAACAAAGTTGCGTGATTGTGTT
TATCAATAGGGCGCCGTATCAGTTTTTGACTTTGTGGCGCACAACACAGG
GCCGGCGAAACGGGGGGCCGGGGGGCCATAGCCCCCCCCCCCTCACTTTT
TTGCTAAGCCAACCAACCATGGTGGCGCCTCCTTAGACACTTACTATTTG
GCCCCTCCACTTTCAAAATTGATTCGCCGGCCCTGCAACAAAATTCTTGC
TGTAAAACTTTCCGCAGGAGGACTTTTTTCCTCAGATGTATAATTTTCAA
GAGCCTTCAGAGGTTTACCGTTCACGTAAGAAAATTATGAAGAGCTGTTA
TCAGGTTACCAATATAAGGCTGGCAAAATTCAAATAGCACGTACATAATA
AAAGGTACAAAAGCTTTTCAAAAACACGTTTTTTATAAGAACATCTTAAA
TTTTTGAAGCTTTCAGATGATCTTTAGATTCTTAGTGTTGCTCCTAAAAC
CTAAGAATACTCTTAACATGTTCTTGTTATCACTACTTTGGGAGTTTTTT
CGTCCATTGGGCTCTTCCAGAAAAAAAAATTGTACATGGGGGTGGAGGAT
ATAACAATTTTTAGTGATTTACCCCCCGAACAGGGTGACTTTTGCCCCCC
CCCCCCCCCCCGGACAATAGGTTTTACCCCCCGGACAAGCATCTGCTGAC
CCCCCGGACACCCCAAATTAGCCCCGGACAGAGCAAATTTACCCCCTGGA
CAAGGCAAATTTTGATGATTTTTTGCTACCCCCCGGACAAAATATCCTCC
ACCCCCCATGTACAATTTTTTTCTGGAAGTGCCTATTCTCCTAATAAATT
GGGTATTTTCGAGACTGCGAAGCCTTAGAATGTTCTTAGCATTTTGGCAA
TCGAAGCCATTATTCTTATATAGTTTGCTCATATAGAAAACATGTTTTTT
TAATAACAATGGCAGCATATAATGCTCTAAAGTTAATTTATTTTCAACTT
TTCAGAATAAACATCAAGAAGATGTTTCAAGCTCACATCGATCAGAAATA
GTTCCTTCTGACGTCAGTGATGAAGTTGTCAATCAACAGTCAAAGAAATC
AGCTAAACCAATCACTAAAACAGGCCACAAACACAAGTTGGAGAGTTTCA
TCGAAGAAGACAAATATAAAGAATGCAGATTGAAAATAAAACGACAAAAA
CTTTCGGACAAGATTGGGACAAAACGACTCTACATCGACGCTTTTACTTG
GCAGAAAATTAACCAACAGATTTGCTGTATGAATCAAATCAAGTATCATT
TTATCAATGAAACAAGCTCAGAATGCAACAGTCATTACAGTATGGCTAGC
CAAACCAATATAGCCAGTTCGAATTGCAACAATCATAATGTTATAACAAG
CCAAACCAACATCCACCGGCTCAATATAGCTAGTATACATTGCAACAATC
ATAATGTTATAACAAGCCAAACCAACATCCACCGGCTCAATAGAGCTAGT
TCGAATTGCAACAATCATAATGTTATAACAAGCCAAACCAACATCCACCG
GCTCAATACAGCTAGTTCGAATTGCAACAATCATAATGTTATAACAAGCC
AAACCAACATCCACCGGCTCAATACAGCTAGTATACATGGAAACATGAAT
GAAGGGATAGCCCGACAAACCAACAATCTACCTATCAATATAAAAAATAA
AAATACAAAAAATACCAACAGAAATTTTATTGCTAGAAAAAAGCATTTTA
TTACCTTGCTTTTTTCCGATAAAAATGTCATTAAAAAATATCGATCTGTT
TACATGAAACGACAAAAGGACGTTCTTCCGAAAGATTTAAGATCAATGAT
ATCAGAATTGGTACTAAGCTTGCGTCCAGATAGAAAACCTCCCTGGTATT
GTACAAAACAAATACAAATCGTCAATTTACACCATCTTGAAATGCAAAAG
ATTATGGAACTTTAG

Coding sequence (CDS) from alignment at sc0000072_pilon:118160..124574-

>XLOC_043212 ID=XLOC_043212|Name=XLOC_043212|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3462bp|location=Sequence derived from alignment at sc0000072_pilon:118160..124574- (Clytia hemisphaerica_ch_hm2_pilon)
AACCTCGCACCCGCAAACGTGGTTGTGGATTGTGAAAGCAGAGGCTACAC
TTTGGAAGAAGTTCTCGGACAAGGATCGTACGGAACAGTTTATCAAGCTT
CTTCCAAAAGATTTGATCGCCCTAACCTCGCACCCGCAAACGTGGTTGTG
GATTGTGAAAGCAGAGGCTACACTTTGGAAGAAGTTCTCGGACAAGGATC
GTACGGAACAGTTTATCAAGCTTCTTCCAAAAGATTTGATCGCCCTGTTG
CTATCAAAATGATCGACCCGAAAAAAGCTGGCGAGGGCTATATGGAGTAT
TATTTACCCAACGAATATAAGAGTTTATTGGCAGTCAAGGGATCACAATA
TGTGGTTGCTATCAAAATGATCGACCCGAAAAAAGCTGGCGAGGGCTATA
TGGAGTATTATTTACCCAACGAATATAAGAGTTTATTGGCAGTCAAGGGA
TCACAATATGTGGTACAAATATTAGACGTCTTCAGAGGTTCCACAGGAAT
CGTTTATTTCGTCATGGAGTGCGTCGAGGACGGTGATCTATATGATTATT
TGGAGAATGAGGCTTTGCCAGAAAACGAAGCTCAAGACATCTTCAAACAA
ATCTGCTTGGGGATCAAGCACTGCTTTGATCGAAATATTGTTCACAGGTA
CAAATATTAGACGTCTTCAGAGGTTCCACAGGAATCGTTTATTTCGTCAT
GGAGTGCGTCGAGGACGGTGATCTATATGATTATTTGGAGAATGAGGCTT
TGCCAGAAAACGAAGCTCAAGACATCTTCAAACAAATCTGCTTGGGGATC
AAGCACTGCTTTGATCGAAATATTGTTCACAGAGATCTCAAACCTGACAA
TATTCTTCTTGCAGAAGATGGAACTTGTAAACTAACAGAGATCTCAAACC
TGACAATATTCTTCTTGCAGAAGATGGAACTTGTAAACTAACAGACTTTG
GCTTCGCAAGGAATGTTGAGGACGGAAAGCTCCTTTGGGATCGATGTGGT
ACCAAGGAGTATATGGCACCAGAAATCATCAAAGGTGAAGCCCGGTATGA
TGGAAAGGCATCAGATCTTTGGAGCTTACTTTGGCTTCGCAAGGAATGTT
GAGGACGGAAAGCTCCTTTGGGATCGATGTGGTACCAAGGAGTATATGGC
ACCAGAAATCATCAAAGGTGAAGCCCGGTATGATGGAAAGGCATCAGATC
TTTGGAGCTTAGGGATTATTTTGTACGAATTGGTCACCGGTCAACGTCCC
TTCGATAGCGAAGAGAACGATAAACTGTTTCTGAAGGAACAGCAATTGGG
CCCAGCATGGCCACCAAGCATGTCTATCGAGGGATTATTTTGTACGAATT
GGTCACCGGTCAACGTCCCTTCGATAGCGAAGAGAACGATAAACTGTTTC
TGAAGGAACAGCAATTGGGCCCAGCATGGCCACCAAGCATGTCTATCGCA
TGCAAAAACTTGATAACATCATTGTTGAATCAAGATCCAAAAAGACGGCC
ATCAATTGAAATGGTTTTAAAAAGTCCATGGTTATTTGAAACGAGCTTGC
CAACAGCAAAGCATGCAAAAACTTGATAACATCATTGTTGAATCAAGATC
CAAAAAGACGGCCATCAATTGAAATGGTTTTAAAAAGTCCATGGTTATTT
GAAACGAGCTTGCCAACAGCAAAGAATAAACATCAAGAAGATGTTTCAAG
CTCACATCGATCAGAAATAGTTCCTTCTGACGTCAGTGATGAAGTTGTCA
ATCAACAGTCAAAGAAATCAGCTAAACCAATCACTAAAACAGGCCACAAA
CACAAGTTGGAGAGTTTCATCGAAGAAGACAAATATAAAGAATGCAGATT
GAAAATAAAACGACAAAAACTTTCGGACAAGATTGGGACAAAACGACTCT
ACATCGACGCTTTTACTTGGCAGAAAATTAACCAACAGATTTGCTGTATG
AATCAAATCAAGTATCATTTTATCAATGAAACAAGCTCAGAATGCAACAG
TCATTACAGTATGGCTAGCCAAACCAATATAGCCAGTTCGAATTGCAACA
ATCATAATGTTATAACAAGCCAAACCAACATCCACCGGCTCAATATAGAA
TAAACATCAAGAAGATGTTTCAAGCTCACATCGATCAGAAATAGTTCCTT
CTGACGTCAGTGATGAAGTTGTCAATCAACAGTCAAAGAAATCAGCTAAA
CCAATCACTAAAACAGGCCACAAACACAAGTTGGAGAGTTTCATCGAAGA
AGACAAATATAAAGAATGCAGATTGAAAATAAAACGACAAAAACTTTCGG
ACAAGATTGGGACAAAACGACTCTACATCGACGCTTTTACTTGGCAGAAA
ATTAACCAACAGATTTGCTGTATGAATCAAATCAAGTATCATTTTATCAA
TGAAACAAGCTCAGAATGCAACAGTCATTACAGTATGGCTAGCCAAACCA
ATATAGCCAGTTCGAATTGCAACAATCATAATGTTATAACAAGCCAAACC
AACATCCACCGGCTCAATATAGCTAGTTCGAATTGCAACAATCATAATGT
TATAACAAGCCAAACCAACATCCACCGGCTCAATACAGCTAGTTCGAATT
GCAACAATCATAATGTTATAACAAGCCAAACCAACATCCACCGGCTCAAT
ACAGCTAGTATACATGGAAACATGAATGAAGGGATAGCCCGACAAACCAA
CAATCTACCTATCAATATAAAAAATAAAAATACAAAAAATACCAACAGAA
ATTTTATTGCTAGAAAAAAGCATTTTATTACCTTGCTTTTTTCCGATAAA
AATGTCATTAAAAAATATCGATCTGTTTACATGAAACGACAAAAGGACGT
TCTTCCGAAAGATTTAAGATCAATGATATCAGAATTGGTACTAAGCTTGC
GTCCAGATAGAAAACCTCCCTGGTATTGTACAAAACAAATACAAATCGTC
AATTTACACCATCTTGAAATGCAAAAGATTATGGAACTTTAGCTAGTTCG
AATTGCAACAATCATAATGTTATAACAAGCCAAACCAACATCCACCGGCT
CAATACAGCTAGTTCGAATTGCAACAATCATAATGTTATAACAAGCCAAA
CCAACATCCACCGGCTCAATACAGCTAGTATACATGGAAACATGAATGAA
GGGATAGCCCGACAAACCAACAATCTACCTATCAATATAAAAAATAAAAA
TACAAAAAATACCAACAGAAATTTTATTGCTAGAAAAAAGCATTTTATTA
CCTTGCTTTTTTCCGATAAAAATGTCATTAAAAAATATCGATCTGTTTAC
ATGAAACGACAAAAGGACGTTCTTCCGAAAGATTTAAGATCAATGATATC
AGAATTGGTACTAAGCTTGCGTCCAGATAGAAAACCTCCCTGGTATTGTA
CAAAACAAATACAAATCGTCAATTTACACCATCTTGAAATGCAAAAGATT
ATGGAACTTTAG

Gene-mRNA-Prot

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
XLOC_043212	XLOC_043212-protein	Clytia hemisphaerica_ch_hm2_pilon	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000072_pilon	genome	sc0000072_pilon:118160..124574 -

Properties


Property Name	Value
Aaloc	1264-1731:469
Aaloc	838-1260:961
Aaloc	727-837:2507
Aaloc	607-723:3227
Aaloc	475-603:3591
Aaloc	418-471:4177
Aaloc	232-414:4578
Aaloc	124-231:5690
Aaloc	1-123:6416

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XLOC_043212 (mRNA) -