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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000054_pilon:403706..408667+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043124 ID=XLOC_043124|Name=XLOC_043124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4962bp|location=Sequence derived from alignment at sc0000054_pilon:403706..408667+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaattgaatttcatCACCCTCCTTGGTAAGTACATTGAAGTCTCTAT
GATTCGTACTCGAATGTTTAATTAACTCGAACGAGTTTTCTGGTCCCTCC
CAGTTGAAATTGCTTTTTAAACCTTACTCCAAAACTCGAAATCTCATTAA
TCTACTTAACTGCGTTTCCATGCGCgtgtcgagttatagagactcttATA
GTTAGATTTAAGAAAGACCGTAAAAATTTAGTGTCGTGAACAGCTAGAGG
GTTGAAATGCGCAAAAAcaggattcaaatttttcaatttcaagtggAATC
TTTGACTGCCGTGTGGAACGTCTAAGTACAAAATCTATAATGGTTATCAT
ATTGTACCTGTAATCTGCAACGAAAACTGATATCATCTCGATATAATTAT
TGTATAACTATGTTACTGTAATACGTAGATTATGAATGACTACAGTCTCA
TATATACCTGGTGATAACTCCAATCAATAAATCTCTTTTACTCTCTAGCT
CTTGGGCTGACAGCATTGGCCGGGCACACGTCGGCTCTTTGCATGGACAC
TTTACCAGGATGTGATGTGACCAAATGTGGAGGACTTACTGGAAAGGTGT
GGTGTAAGAAAACATGCGGAACTTGTGGTATGTGTTGTTGCTCTCTTTCC
CCCTTTTTAAAAGACATCGTTTAACCATCTTCTAACATTTGCTTTCAcag
catttttcaacaaaagacatgacaattttctttcctttcccCACCTTGGA
CGAGTAAAAAATTCGAAGAATTCTTTcatttaccttatcggcccttttta
caccggaccttattggcgttatttttgggctcgtggcgtaataagggccg
gcgtaaaaagggccgataaggtattcggATTACTCAGCATATGAAGAGCG
CTTtctttctatatcataaaaaagaatatctttaacttCGATTTAAGATg
ttttactttcttttacttgcgctgcaatttttactcattatatagttttg
cactttttttgaaataacatTGACAGAGGATTGTagaaaccattgagttt
aacgcccgaagggctagagaagaacctctaacctttctcaggcaagaaaa
agtgaagcccttaaaaattgcgccgtatttttgacgacagattgaatcta
gcaattcctttgtttatgattgatatttttttcgaaatttagcggtagat
tttagttttaatctgtcatttgtgtaaaaaccaggcgagccgctcaaggc
cgcgcaactttggtaggatttgttggcttcaaatcctaccaaggagattc
aattctagcccatcgggcttatacttcattggtagAAACTCACCCTACAA
AGGTCTATTTAAAGGCAGAAGATTTGGAATGATACAGATTGGTAGTCTGA
AGCATTTGACAACTTCAAAATTGAATTTCCAAATTCAGCACAAAACCCCA
TTGAGTAGGGCaaaaaaaCTTCTAATTGAACCAAATCACCCTCTCTATAA
TTTTAGTTTCAACAACTCAAGCCCCAACCGGACCAGGTAGGTTTGATGAA
GATTTAAATCaactaatttatcaatttttctaCGATTTGTACTTAAGATT
CTTTTTGCTTTTCGAAATTAGTAATTAATTTGAATGAACAAGTGGTCAAG
TAGTTTATTGTGTTCTATCATAACCCCCGACACTGCAGTTAAGTTGATCA
CCGTAGGTGCGACCCTTAAGGGTACGCTTTTCAGGCTTCCTAAAGTACAC
GGTAAGggttgttgaatttttttcaagaaaatatacCGTTAGGGTAGATT
TTTTGCATATTTACTACTAGAAGGGTCAAATTTTGAGACCCTAATTTTTG
TTCACATGAAGTTTTCAAGTCGCCCTCCCCATAAAGCTCGCTTACGTGCT
CtaattgtttctttttaattttacagcCACAAACGCACCAAATTATAAAG
GTAGGTTTTTATTTCATCAAACTAAAAATAGTGTCCAAAGAGTCAGGATA
GTAGGCCATAAGCACTCGTACCTGATAAACAAGGCGTTTGTTCTGAATAG
AGACTAAACAAACTCGTCCCAGTGTATACCAGGcattatttacgttactg
aatgacgccagagaatatatTATGTGACGccatcagtaagcatcaaaaag
ttgataatacgcagggataCAAAGTTAGACTAAATAAAATCTGgctattt
taaaaacaaaatgagtggGTGTTAGGAGAAAAAATACAGCTGATGCTCTG
CTctttaattcgacgttctactattcgatatgctcctttattcgataaaa
atccaaTTCCTTTTAAACATCGaactagagagcgtcaactgtattaacCG
ACATGGGGTACGACAATTTGTGTTCCCGGAGTACTGGTGTTTTCTGAGTG
CTGTGAATAcacataaaatgaaaattgaatgagAATCCAACTTACAGTCA
TGTTGCTATATTTACAACCATAGGCTGTGGTTACCAAGGATACCAGAGTC
GTGTAGTTGGAGGCACCAAATCCAAACAATCACAATGGCCATGGCAAGCA
TCGTTGAGTATCGGTGGTAAATTCAGCTGTGGTGCAACGTTGATTGCTCC
ACAATGGGTGGTTACTGCTGGTCATTGCATCCAAGCATACAGGAGAGCCA
ACCAATATTCCTTCAGATTCGGTGAGTGGCTATATAATAAATATACATGG
AGTcttattaaagggacataacagtacttgcgaaatttgtaaacaaactg
tatgcagcggatacaaaatcaaaacaaatatcacatgtcaaaataaaaaa
tcaaaccaaatatagctaattttgattgttcaattgttttacaagtttgt
tttggacacgtgattttaattgttctttttaatgacacgtggttcgcgca
atgtttacattttactacttttatgtccctttaaattaGTACTGTTTAGC
GATACCGTGATTTTCACGTTTGAATACTCCAAAGCCGTAACTGAATGcac
aatgttttctttaaaggAACTTGCAAAATTAGAGCCTGAGATTTTGCAGA
GAAAATACAGCTATCGATCTGAGGAGGAAAATAAacagttgcaaattaaa
agatttctttattttacatAACTCTATACTCTTTTTCCAATCTTTCACAT
CAGGCGATTTGGACAGATACGATATCAGTGGTAAAGAGTATTACGCTAGA
GGAGAAAAGCTTTTCAAACACCCTTCATACAACACACCATTACGAAAGGA
CAACGATATCGCATTAATAAAGCTGGATCGTCCAGTTCCTTTTTCCTCTG
ATATCACACCCGCCTGTCTACCACGCACTGGCGAACAAATCCCTGTTGGA
AAGAAATGCTTTGTCTCAGGTAAACAATCAAGAAACCAAAAGAGACCAGC
ttaatttactttttgaaatttctgacaAATTAACCAAACTATGGACAATA
GTTGGACaaaaaaaTCAGTTTgattgacaatcgaatcatgattgatggtg
ggaatttctatcaatgatgttttttttttttgagaaaaaacaaagaaatg
ttacaATGTTAGgcaaaagcccaatgaaaatctgcaaaaacggcgatttc
cggcatatttccggcattttctgcaggaaaaaattttctcaaaaaatcga
actctgtcatgttttgagcattatGAATTCGCATccttttgcaaaaaatc
agaaaaaacttaggatgaaaattcgagaaaaagtcaaaaaaccggttttt
ccggcatatttctggcattttcggccgtaaaaaaatgtttttcgaaaatc
gggctccgtcacattttaggtattgtcattttacatcagtgtgcaaaatt
tcataaaaaaatataaagtgcagctcgagaaattcaagaaatactgtctt
tccggcgaaaataggttaagttccggtgattttttaatagttccggcttt
aaaaatcaattttattgaaaattgaaacatgcttgatggtgggcattgct
attaataatgtttttgaatgaaaaaacaaccaattataaggaaaaagtct
aatgaaaatccagaaaaacggtgatttccggcatatttccggcattttcg
gccggaaaaaaatttttcttaaaaatcggactaggccatgttttgggcat
tgttaatgcgcatctttaagcaaaaaatcagaaaaaactaatgatgaaat
ctcgagaaaatgtcaaaaaaccggtttttccggcatatttcaaaaatcgg
gctccgtcacattttgggcattgccattttgcatctttgtgccaaaaatc
agaaaaaaataatgagccaatctcgagaaaagctggtaacagacggacgg
acagacggacggacggacgaacaaaggttaatttataggacctccaggta
ggtccaaaaattcatAGGTGGATGAAAACTGCCAAAAGTAAAATGTCCAG
GGTCCAATGTTGATTTATTGTCTTGGGTGTTTAGAGAGTAAATAATCAAA
ATGTCCAGTGATAGTTCATTGATAAAAATGATCTATCGTTCAACCCCATG
AGAAAGTTTTCTTAAAGAGAAATCCTAgctaatttacaaaaaattataGT
CATACGATTTGTAACTTACAGGTTGGGGAAAGACGGATTACGCTGGTCAA
GCAGTATATGATCTCCAACACGCCCCATTACAAATCATCAGCAACAAACA
ATGTTGTGAAACAAACTGTGATCGATGGACACCAAACATCCCTAACAAAA
TGGTGTGCGCCAAAAATCGTGAACAAGCAACTTCAGCTTGTCATGGTGAT
TCTGGAGGGCCATTTGTTTGTCAAGGCAGCAACGGCCGTTGGTTTTTACA
AGGTGTGGTAAGCTGGGGATCGGGTCGATGTAATGCGTTCCAAAAGGCGA
CCGTCTTTACACGTGTTACAGAATACATGACTTGGATCAACGAAAccatc
aaaaataattaa Coding sequence (CDS) from alignment at sc0000054_pilon:403706..408667+ >XLOC_043124 ID=XLOC_043124|Name=XLOC_043124|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1932bp|location=Sequence derived from alignment at sc0000054_pilon:403706..408667+ (Clytia hemisphaerica_ch_hm2_pilon)
atgaaattgaatttcatCACCCTCCTTGatgaaattgaatttcatCACCC
TCCTTGCTCTTGGGCTGACAGCATTGGCCGGGCACACGTCGGCTCTTTGC
ATGGACACTTTACCAGGATGTGATGTGACCAAATGTGGAGGACTTACTGG
AAAGGTGTGGTGTAAGAAAACATGCGGAACTTGTGCTCTTGGGCTGACAG
CATTGGCCGGGCACACGTCGGCTCTTTGCATGGACACTTTACCAGGATGT
GATGTGACCAAATGTGGAGGACTTACTGGAAAGGTGTGGTGTAAGAAAAC
ATGCGGAACTTGTGTTTCAACAACTCAAGCCCCAACCGGACCAGTTTCAA
CAACTCAAGCCCCAACCGGACCAGcCACAAACGCACCAAATTATAAAGcC
ACAAACGCACCAAATTATAAAGGCTGTGGTTACCAAGGATACCAGAGTCG
TGTAGTTGGAGGCACCAAATCCAAACAATCACAATGGCCATGGCAAGCAT
CGTTGAGTATCGGTGGTAAATTCAGCTGTGGTGCAACGTTGATTGCTCCA
CAATGGGTGGTTACTGCTGGTCATTGCATCCAAGCATACAGGAGAGCCAA
CCAATATTCCTTCAGATTCGGCTGTGGTTACCAAGGATACCAGAGTCGTG
TAGTTGGAGGCACCAAATCCAAACAATCACAATGGCCATGGCAAGCATCG
TTGAGTATCGGTGGTAAATTCAGCTGTGGTGCAACGTTGATTGCTCCACA
ATGGGTGGTTACTGCTGGTCATTGCATCCAAGCATACAGGAGAGCCAACC
AATATTCCTTCAGATTCGGCGATTTGGACAGATACGATATCAGTGGTAAA
GAGTATTACGCTAGAGGAGAAAAGCTTTTCAAACACCCTTCATACAACAC
ACCATTACGAAAGGACAACGATATCGCATTAATAAAGCTGGATCGTCCAG
TTCCTTTTTCCTCTGATATCACACCCGCCTGTCTACCACGCACTGGCGAA
CAAATCCCTGTTGGAAAGAAATGCTTTGTCTCAGGCGATTTGGACAGATA
CGATATCAGTGGTAAAGAGTATTACGCTAGAGGAGAAAAGCTTTTCAAAC
ACCCTTCATACAACACACCATTACGAAAGGACAACGATATCGCATTAATA
AAGCTGGATCGTCCAGTTCCTTTTTCCTCTGATATCACACCCGCCTGTCT
ACCACGCACTGGCGAACAAATCCCTGTTGGAAAGAAATGCTTTGTCTCAG
GTTGGGGAAAGACGGATTACGCTGGTCAAGCAGTATATGATCTCCAACAC
GCCCCATTACAAATCATCAGCAACAAACAATGTTGTGAAACAAACTGTGA
TCGATGGACACCAAACATCCCTAACAAAATGGTGTGCGCCAAAAATCGTG
AACAAGCAACTTCAGCTTGTCATGGTGATTCTGGAGGGCCATTTGTTTGT
CAAGGCAGCAACGGCCGTTGGTTTTTACAAGGTGTGGTAAGCTGGGGATC
GGGTCGATGTAATGCGTTCCAAAAGGCGACCGTCTTTACACGTGTTACAG
AATACATGACTTGGATCAACGAAAccatcaaaaataattaaGTTGGGGAA
AGACGGATTACGCTGGTCAAGCAGTATATGATCTCCAACACGCCCCATTA
CAAATCATCAGCAACAAACAATGTTGTGAAACAAACTGTGATCGATGGAC
ACCAAACATCCCTAACAAAATGGTGTGCGCCAAAAATCGTGAACAAGCAA
CTTCAGCTTGTCATGGTGATTCTGGAGGGCCATTTGTTTGTCAAGGCAGC
AACGGCCGTTGGTTTTTACAAGGTGTGGTAAGCTGGGGATCGGGTCGATG
TAATGCGTTCCAAAAGGCGACCGTCTTTACACGTGTTACAGAATACATGA
CTTGGATCAACGAAAccatcaaaaataattaa
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054_pilon | genome | sc0000054_pilon:403706..408667 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 628-966:4624 |
| Aaloc | 412-624:3156 |
| Aaloc | 214-408:2476 |
| Aaloc | 190-210:1929 |
| Aaloc | 160-186:1509 |
| Aaloc | 31-156:501 |
| Aaloc | 1-27:1 |
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