XLOC_043103 (mRNA) -

Overview
NameXLOC_043103
Unique NameXLOC_043103
TypemRNA
OrganismClytia hemisphaerica_ch_hm2_pilon (Jellyfish)

Sequence
The following sequences are available for this feature:

mRNA from alignment at sc0000242_pilon:159003..167207+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_043103 ID=XLOC_043103|Name=XLOC_043103|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=8205bp|location=Sequence derived from alignment at sc0000242_pilon:159003..167207+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACTAAAATTATCGATGTCAATAATCCCAGTGGGGGTTCACAAAG TGCAACAACATGTCCATGGGGGAAGATTCAAAACACCCCTCCAGCTAGTT CATTCTCATCTTTAATGGATGAAGAATATGCGAAGGAGCTTGAAAGTGAA GAATTGAAATCTTTAAGCCAAGAACAAGATCCAGTCCAAACAGAAACACA AGGTCAGTGacataatttaatttttctcaacTTTTGGTCTTTTGGCCTGG GCATGATTCTTCTTCTCGAAATAAGGTTAAAACTTTGGCAGACTGGAGAT TTCAAATTTGCGaaattgactgaaatttggcacacttattCTTCCTTTGG TCAATGAATACCTAGTAGCctggtgttttttttcttttttttttaatttt tgatattttcaggCCTGGGCATGAGTTTTACGCCAAAATGAGGCTTATGT TAGCCGTCTGGACTTTCACGGGCCAGCCAGTCAGTCAGCacgggcgacag tttttttttctaattttaagaGTATTTAGTCTTTCTTTGACAGAattgaa ttattgaaaattattcTTAAAGGAGAATTAATGTTTGAGATTTGGCATTC CAtttttttGCCTGGACAGGAAGAAGATCAAAAATGGagtttaataaaaa aagaactaattaaaaatcttgtttatttacttgattATTTAGCTTCAAAT AAAGATTGCTCTTTTTAGGCTCTAAGAAGGAGAAAATTACACCCTCCCTA TATTTTGTGACGTAGGTTGCAAGGATGAATAAAcataatgttttaaaaat ctGCAGTAGTAAAAAAGGGAAGAAGCTTGAAAGGAGTTTTACATGAATGT TATATCATTAGAATACTCGTCAGAGCTACTGTTTGTAGACGAAGAATCAC TGGTTGCTCTCTTTcatttctctctcttttttgaAAGTCTAACAACCACT TACGCGCATCATACGTCACAAATTTTGTTGCCATGGTTATATAAGGGAAT TTTTATTCTATTATTCGGTATAGAAAAAGTAAACAACTATGAATTATATA TTCTTGGAATCGTGTTAATGAGCTCTTTAAGAATATAATCataagtttca ttgaaaatcacACATATTAATTCCTCTTTAataacattattttcaaattc tagTTGTAATACCACCTGAAGCTGCCACTAATGGATCTGATGACACCGCT AATGATTTGTTATTAGCACAAATGTTACAATTAGAATTTAACAAAGAAAA TGATGCATATGTCAAATCATTAGAAAAGACTTATAATGGAACAAGTAAAG GTTTGTGCTGTTGTTATTATTGTAGCGTCTTTAAAATCAATTCAACGTTT GATTGCATTAGCTACatatttaaaaatctaaaaaaatttttttgctgata tatatgaagaaaataagaatttctgtccaactatattcactcaggagatt ggggtggcagagcagcatatgcgttttggtccttattaggactcgtcatc ACTGCATCTGCATACTGCACACTGGCTGGCCAGATCGATTTAGCCAGCAT CTCTAAACCACAAAACCACTTACAGAATATAGAGGATAATTTAATACGAA ACGTATAAGTAAAAAATGAACCACTGAAGCTTCTGTCAAACgaaaatttt gctgaaatttggaccaaatgtttcatcacacaagaaaataagaccctaaa aatcatgaactctggtggggaagCAGATTTCTAAAccacaaaatcacttg tggttcaaaCTAAGAGAAATACTGGACATAAGGGAAATTCCCTAcagaag ggaaattccctacaGAATATATAGGATAATTTAATTCTCTTTGAGGACCG AAACGTATATGTAAAAAATGGACAACttttttttGGTTAATTAAACAGTG TCAATGTCATTCAAGAATTTCCAGTCAGTTCACCCATACGAGGCTGATTC ATCACGTAAATTATATGGCAAAGATGATTTTGACGATGACAGTAGCGAGG AGGACTCTGATCTCGATGATGCTATTAGTAAGTTCACTCAATTTTTTCGA GAAACCTATCTTGGCTCCTTTAAAATTCCACTCTAGCCCCTTCAAAGATT GAAAGTCTTCAGCTTATCACTTCCTTTTGTGTCTTGTGCAtattcctttt gttttttattttatacttCCAAAATGTATATTGGGTTTTTATTACAGATT GTAATGGTTAGTCGctagtttgtattttcttcagtgcataTAACTTCACT ATATACTCTAGCCCCTTCAGagattgaaactcaatggaaCTACCTCATTT TGTCATCTCTCATTCACAAAGCCTttaagaaatattattttggggtattt tttctCCATCATAGATGAAAGGAAAGCAGACGGTGAAATCATTACAAAAC ATGATCAACAAATTTCTGAAAGGAAGAATGCCAAAAATGTAGAACAGGTA TAAAGGAAGAAGAAGTCCACATGCTTGATTATTGATAAGATATTGGGCAg tttcattaaatttccatactaAAAGGGgtggacaaaccttttcaaggcaa aaaaagattcttaggAATGTGTGGATGCCCaaaaaaaTACccctggaaaa ttgcaaaatttgcagaacccttggaaaattcttttcatacctttaaAGTG AGGATGGACGAAAAGTCTTTTAACCCATGGAAATTTTTGAATAACCATTA TACCCtctgacaaatgaaaaaataatcccctggaaattcttctccgaTTA CAAATTATTCGTCCACCCCTCTATGGGGTACggttataaaatggaatgac aTATTTCAATACATAGCTCAATTAGGACAAAATCGATGTTGACAAATTTT CGCAGTATCCTGCTAAACCATACCAGACCTATTACAGAAATAACAATGTT ATTTTTTACTTCCTTAAGATAACATCCTCATCTATTAACCGAGTTGCAGA CCTTGGTAGACCCTGGGCAAAttgtaaataaaatatcaaGTTTTCACAGT TCTTTGTATTTTACAACAACAAGTTTTCTTGACGCGGCAGATTAGATTGC TGATTTTTGTAGCATTTTTACAGcagcattgggcttttccagaaaaaaaa attacacccactgttgattgatttttagaagtatcgaaccccctggatat cctactttattagtaaagaccccatAGATATCAGCTCTTAAAAATAtact caaccccctggatatcctctcttataaagatgcttacccttggatatcgt attttttcaCTCGAAAtgcactttaccccctggatatccgctcccttgta gatatttaaccccctggatatccacttttgaacttTATTTCCCAATTTCC TTTGCAAAAGGGGACGtttttttACCTCCAGAACCTCCCATTCAATGaag ttcattttctttattttgtttaagCTAATCCAccatgtcgacatccctct tctaaatCCGACACCCTTCTTCAGAGGTAAGATaagaaggtcggaatcac tgatagacaaaaaaTTTTCCTAACTAATCGCTAAGCAAATAAATATAATT TCCATCAACGATTCCGGCCGTCTTATTATTCCCAACTCTTGGTGTCCaag gtgtcggaattagaagagagATGTCGACATTAAGCCAACTTAGAGTGTTA AGAGCGGAATTCCCAGACCAGATATTCAATGGAGTTTATTTAGTTTTCTT TACGCATCAAGCTAACCCACTTTTATaatgattattttatttatactaGT TTCCACTCCACTTTGCTTCTGGAGATGTTGGCAGAAAGGATATTCGCCTA CCAAATGCTGTTTACAACCGATTGAAAACACATTCAAAAAAGGAGGAACG GAACAACATGAGAATACATGAAAAACAAGAACATTCAACACACGtaagaa taaaaataattatcttaaaagagaactaattttcgtatggtcgaaaaaaa ttccattgatttttgatggaaaatggccaaaatttgtAATTCGTTGGTTC TGATTTTTGGGGTTTTGCCGAATAAAcgcaaaagaaagcaaaaatttagT TCCTTTTCTAAGTAGATCTTagaagaactaattttcgctaTCTAACCAGA ACTAGTTAGATACTTTCTTTTGCGAGGCTCTTTGAAGCTTTTAGCGCGGA CATTTCAGATATtgtgtaaaattattttaacaaaTGTGTAGCttgcttag attgggtaatgcTGGGTGCTACGAATAGATGTGGCACTCCATCTCAACAT TTTACCTCCCAGATCTATCGCCAATAGAAAAAGGGAAAGACTCTCTCACT TCCGGCTCCACGATCCGACAGGTCCATGAGATGAAAATACTTACTACAgt ggacgctctctaattcgacgttctactatattcgataagctcccgttttc gatcaaattgaaagtcaccgtcaaatttccttaagaaactctcataaact acgctctactattcgacatcctattattcgataagctcccgttttcgatg aaaatttgaagtccctTGAAGGTTtttcgctctcttattcgatttctaGC GTGTAAAAAGGCCTTTAGGACGGAgttcgaaattcaaattttcgattttt ttgcgtttgaattataatttcgaaattcgattcctcaaaacttttcaaaa caggcAAATATCGAAAGTTTTCTTCCGAAGAACTTAGGTTTTCAGCAAGA ACTTAGACATTTATCCTGATTCGCGTTCAAACCAATCGAGTCTcgcttat atttttctttctcagctctataattcgatatttACCTCGTGTTTATCGGA TTAGGGAGACTTCCTACTATTCGACACGCTCccgtattcgatgaaaatcc gattccccttgaaaatcgaattagggagcgtcaactgtaatttaTTTCTG TGAATTCTGTTCTTCCGTTCTCTTTTCCAGGAAAAAGCTTTAGATGAGAA ATCTCGTTTGATCTTGTATAAGATGGTAAACAACGGGACACTTGATAGCA TCAGTGGTATTGTCAGTACAGGCAAAGAGGCTGTTGTTATACACGCTAGA GGAGGACAGTAAGTACTCTCTCTAAATAGAATGGATTTTTAGGTTCGTTT AaaagccggtctccacttgcgcgcgcttcgatcacGTTTTATCTGGCAAA GCTTCcatgctattggtcaaaagaaaaatgaagcaattccattggcgtga tctgacgtaacggttgaaaaaagttgaaatgtattgaactttttttttca agcgcgagcttcatttttatgacgtaatcttttttccaagcaaaattgAT TGAAGCCAAacagtgcgatcgcagcgcgtgTGTGGATACCGGCTTTAAGT GACATTATTTTGAGTCATAAtcattgtttaaatttttcaaaagatccACA ATACCAAAAATTGATCATGAGACGCTCTATAATTTGAATTGTGTCGTTCA TGAGAGTTTCTAGTTGGCGATGGCTTtgaatattatcgaataattgaGCG TTTCGAAATAATAAAACTTGGATATTGAGAGCATCAATATAAGACGATAT AATATAAGACAATCTTTTCTACTGTTTTCTTGTTCATCTTTCAACAGGTC TGAAAATGGTCCACTTCCATCAGAGTGTGctttgaagattttcaaaacGA CATTGAACGAATTCAAAACTAGAGAGAAATATATCAAGGATGATCACAGG TTTCGTGACCGCTACTCTAAACAAAACCCAAGGAAGATTATCAAATTGTG GGCTGAAAAGGAGTTCAGAAATCTCAACAGGTATGTTCCATGTTAgcctg tacacgttttttagaacaaactttataaaaatatgAGGCTTCACAACAAG TTTTAAGGCTTTTTAGGTTCTAAAACACCTTTTTTATTAGGAAAATAGac gaaaatactcaaaatttgctgaaaataagaacatgttaaaaacattttta agcttgaaatccgaaaagttaagaacatttaaaattcTGAAGGTTGGTGT TATTTTTCAACGGAGAAGAGTTTgttagtttcatttttcattgagGATTC ATTTGAATGGACTTGAAAAGTTTGTTACAGGcaagtttaaagtgttattt ttACTGTGTGGGATTCATTCGAATTCAAATTGGTCTCaaccttttcattt tcatctgaACTGCTCCACTCTTTCGCCCCAAAACATCGATTGTTCACAGT TTTAAACGGAAAATGTTATATGGTTAAAAAACTATCATCACTCGTCAATG TTTCAGATATTATTATAGAGATTGAATGAAGTAACATGAAAAAATTTCCC TATAGCACTTTGCTTTTTGCAATGGAGCATTAAATATGTTCCCTCTGTAG TTATCTTCTTATTAGCTACCAATACCGTTTGAAAACCAGAAGATCCTCCG AGCTTTGAATTCACAACCATACCATTGGGGAGAAATATCTTTATCCGTTG CGAATCAAAATCATAttctcgatttttttcttccgtTAATTTTCAATGGT TCAGGTGACTAGTCTCAACACCAGTGTGTTTATatttgtacatttttatt ttgtatcatactTGTAGAATGCAGGAAGCCGGTATCCCATGTCCAAAAGT TGTTTGCTTACGTAAGCATATTCTTGTAATGACTTTTGTTGGAGCAGACC AAAAACCGGCACCAAAATTAAAAGATGCAATATTATCGAGAAGGGAATTA GAATCAGCTTACAGTCAGTGTACAGAAGTAAGAATTTCTTGGCTTGATCT CATTTACACGTTAACAACCAAAGAAGTGATCTTAAAGGCCATGAGACGCC CTGGATAACTTTGAAACATTGGCATCGCGTCTTGTTATCCTTAACTCATA TTTTTATACATTGTATCACTACGATCTCGATTTCTTCTTCTTATAGTATA GGAAATACtttttttCCCATCATATAAATCGGCTTTCCCaaaataaaata gggctcttccgtctaaaaacaaaatgttaaaaaaccattaaacaaatgaa aagttcaaataataagttaaattttagaattatgaaaaatttaatttcct aGGAGACATTGATAGATCAGGGGCTGAAGTACAGCTTGCTCTCgcttacc ttatcggccaaaacttagtcggccctaagtgactaaattttggcttggtg actaaaattagggctgaCCTGGgctgactaaaaatttgggccgactaaaa tttagACCGactaaaaaattagaaatggccaaaatttaGTTATTAGttgg cccttagtgactaaattttgacgaggtgactaaaatattagggccgacta ataattaaggccgactaaaattaaagccgactaaaattaaggtcgactca gttttggccgataaggtatccgAACTCAAACGGTaaaaaaaTATTCCATT CCTTTTACAGATGATGAAGACGATGTATAACGAATGCAAGCTGATTCATT CTGATCTCAGCGAATACAACATTCTATGGCATTAcaataaatgttttttc attgatGTTTCACAATCTATAGAACCTGTCCATCCACAAGCATTTCATTT CCTACTTCGAGATTGTCACAATATAACCAGTTTCTTCACCAAAGCTGGAT TGACCACAGATATTGTGATGAAGGAAGAAGAATTGTTTAAATATGTTTGT GGCAAAGAATTGGGCGAAACTTGTCTTGATCAAATTGAAAACGAGGTAAA TACTTTTTAAGTCTTTTTTAATAAGATCAAACCATATAAGAtcaaaccat ataagaacataaggcttcgatgatggccaaagtattaagaacaagttgag aacatttaaaGGTTAACCTTGAAATTCAGAAAGTTAGGAACATTGAGAgg tttcaaaatttaagaatgTATATAATATTAGTGTGATTTGGTTGCCCAAT TCCAGGGCATaatctttaattttcaaatgttgacTTTACTTGTGACATTA TACCTTAGCCAACAATATTATCACTCTTTCACTTTCTCCTCGCagcaaaa accaaatttcgagcGGGACGAAGAAATGCTAGCGTTTGGTTTGAACTCTG ATGCTAATTTCGATTATCAATTCaaattcaaccaatcaaaactcGATCAA GCAAAACATAACCAATCAGAAGAGAGTACGGCCGACCAATCAGCTGACAG TAAAGTGAATGAACTAGCAGATATGTCAGAATCAATATCTACGAGTGAAA ATTAA

Coding sequence (CDS) from alignment at sc0000242_pilon:159003..167207+

>XLOC_043103 ID=XLOC_043103|Name=XLOC_043103|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3342bp|location=Sequence derived from alignment at sc0000242_pilon:159003..167207+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGGCAACTAAAATTATCGATGTCAATAATCCCAGTGGGGGTTCACAAAG
TGCAACAACATGTCCATGGGGGAAGATTCAAAACACCCCTCCAGCTAGTT
CATTCTCATCTTTAATGGATGAAGAATATGCGAAGGAGCTTGAAAGTGAA
GAATTGAAATCTTTAAGCCAAGAACAAGATCCAGTCCAAACAGAAACACA
AGATGGCAACTAAAATTATCGATGTCAATAATCCCAGTGGGGGTTCACAA
AGTGCAACAACATGTCCATGGGGGAAGATTCAAAACACCCCTCCAGCTAG
TTCATTCTCATCTTTAATGGATGAAGAATATGCGAAGGAGCTTGAAAGTG
AAGAATTGAAATCTTTAAGCCAAGAACAAGATCCAGTCCAAACAGAAACA
CAAGTTGTAATACCACCTGAAGCTGCCACTAATGGATCTGATGACACCGC
TAATGATTTGTTATTAGCACAAATGTTACAATTAGAATTTAACAAAGAAA
ATGATGCATATGTCAAATCATTAGAAAAGACTTATAATGGAACAAGTAAA
GTTGTAATACCACCTGAAGCTGCCACTAATGGATCTGATGACACCGCTAA
TGATTTGTTATTAGCACAAATGTTACAATTAGAATTTAACAAAGAAAATG
ATGCATATGTCAAATCATTAGAAAAGACTTATAATGGAACAAGTAAAGTG
TCAATGTCATTCAAGAATTTCCAGTCAGTTCACCCATACGAGGCTGATTC
ATCACGTAAATTATATGGCAAAGATGATTTTGACGATGACAGTAGCGAGG
AGGACTCTGATCTCGATGATGCTATTATGTCAATGTCATTCAAGAATTTC
CAGTCAGTTCACCCATACGAGGCTGATTCATCACGTAAATTATATGGCAA
AGATGATTTTGACGATGACAGTAGCGAGGAGGACTCTGATCTCGATGATG
CTATTAATGAAAGGAAAGCAGACGGTGAAATCATTACAAAACATGATCAA
CAAATTTCTGAAAGGAAGAATGCCAAAAATGTAGAACAGATGAAAGGAAA
GCAGACGGTGAAATCATTACAAAACATGATCAACAAATTTCTGAAAGGAA
GAATGCCAAAAATGTAGAACAGTTTCCACTCCACTTTGCTTCTGGAGATG
TTGGCAGAAAGGATATTCGCCTACCAAATGCTGTTTACAACCGATTGAAA
ACACATTCAAAAAAGGAGGAACGGAACAACATGAGAATACATGAAAAACA
AGAACATTCAACACACTTTCCACTCCACTTTGCTTCTGGAGATGTTGGCA
GAAAGGATATTCGCCTACCAAATGCTGTTTACAACCGATTGAAAACACAT
TCAAAAAAGGAGGAACGGAACAACATGAGAATACATGAAAAACAAGAACA
TTCAACACACGAAAAAGCTTTAGATGAGAAATCTCGTTTGATCTTGTATA
AGATGGTAAACAACGGGACACTTGATAGCATCAGTGGTATTGTCAGTACA
GGCAAAGAGGCTGTTGTTATACACGCTAGAGGAGGACAGAAAAAGCTTTA
GATGAGAAATCTCGTTTGATCTTGTATAAGATGGTAAACAACGGGACACT
TGATAGCATCAGTGGTATTGTCAGTACAGGCAAAGAGGCTGTTGTTATAC
ACGCTAGAGGAGGACAGTCTGAAAATGGTCCACTTCCATCAGAGTGTGct
ttgaagattttcaaaacGACATTGAACGAATTCAAAACTAGAGAGAAATA
TATCAAGGATGATCACAGGTTTCGTGACCGCTACTCTAAACAAAACCCAA
GGAAGATTATCAAATTGTGGGCTGAAAAGGAGTTCAGAAATCTCAACAGG
TCTGAAAATGGTCCACTTCCATCAGAGTGTGctttgaagattttcaaaac
GACATTGAACGAATTCAAAACTAGAGAGAAATATATCAAGGATGATCACA
GGTTTCGTGACCGCTACTCTAAACAAAACCCAAGGAAGATTATCAAATTG
TGGGCTGAAAAGGAGTTCAGAAATCTCAACAGAATGCAGGAAGCCGGTAT
CCCATGTCCAAAAGTTGTTTGCTTACGTAAGCATATTCTTGTAATGACTT
TTGTTGGAGCAGACCAAAAACCGGCACCAAAATTAAAAGATGCAATATTA
TCGAGAAGGGAATTAGAATCAGCTTACAGTCAGTGTACAGAAAATGCAGG
AAGCCGGTATCCCATGTCCAAAAGTTGTTTGCTTACGTAAGCATATTCTT
GTAATGACTTTTGTTGGAGCAGACCAAAAACCGGCACCAAAATTAAAAGA
TGCAATATTATCGAGAAGGGAATTAGAATCAGCTTACAGTCAGTGTACAG
AAATGATGAAGACGATGTATAACGAATGCAAGCTGATTCATTCTGATCTC
AGCGAATACAACATTCTATGGCATTAcaataaatgttttttcattgatGT
TTCACAATCTATAGAACCTGTCCATCCACAAGCATTTCATTTCCTACTTC
GAGATTGTCACAATATAACCAGTTTCTTCACCAAAGCTGGATTGACCACA
GATATTGTGATGAAGGAAGAAGAATTGTTTAAATATGTTTGTGGCAAAGA
ATTGGGCGAAACTTGTCTTGATCAAATTGAAAACGAGATGATGAAGACGA
TGTATAACGAATGCAAGCTGATTCATTCTGATCTCAGCGAATACAACATT
CTATGGCATTAcaataaatgttttttcattgatGTTTCACAATCTATAGA
ACCTGTCCATCCACAAGCATTTCATTTCCTACTTCGAGATTGTCACAATA
TAACCAGTTTCTTCACCAAAGCTGGATTGACCACAGATATTGTGATGAAG
GAAGAAGAATTGTTTAAATATGTTTGTGGCAAAGAATTGGGCGAAACTTG
TCTTGATCAAATTGAAAACGAGcaaaaaccaaatttcgagcGGGACGAAG
AAATGCTAGCGTTTGGTTTGAACTCTGATGCTAATTTCGATTATCAATTC
aaattcaaccaatcaaaactcGATCAAGCAAAACATAACCAATCAGAAGA
GAGTACGGCCGACCAATCAGCTGACAGTAAAGTGAATGAACTAGCAGATA
TGTCAGAATCAATATCTACGAGTGAAAATTAAcaaaaaccaaatttcgag
cGGGACGAAGAAATGCTAGCGTTTGGTTTGAACTCTGATGCTAATTTCGA
TTATCAATTCaaattcaaccaatcaaaactcGATCAAGCAAAACATAACC
AATCAGAAGAGAGTACGGCCGACCAATCAGCTGACAGTAAAGTGAATGAA
CTAGCAGATATGTCAGAATCAATATCTACGAGTGAAAATTAA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Feature NameUnique NameSpeciesType
XLOC_043103XLOC_043103-proteinClytia hemisphaerica_ch_hm2_pilonpolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000242_pilongenomesc0000242_pilon:159003..167207 +
Properties
Property NameValue
Aaloc1462-1671:7996
Aaloc1177-1461:7411
Aaloc1018-1176:6569
Aaloc835-1014:5599
Aaloc706-831:4931
Aaloc562-705:3750
Aaloc481-561:2367
Aaloc352-477:1901
Aaloc205-348:1156
Aaloc1-201:1