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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000172_pilon:116739..121387+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_043058 ID=XLOC_043058|Name=XLOC_043058|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=4649bp|location=Sequence derived from alignment at sc0000172_pilon:116739..121387+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTTCAAAGAAAAGCAATCAGAACAAGCCCAATGGATTTGTTCTTTA
TgcaaatgaaatcaaaaaccaATTGTTGAAGGAAGGTCATTCGATTCGTA
ACATGCCTGATTTGATTGCTACTGCTAGTCCTAAATGGCAGGTATGCTCT
TTTTTCTTAtcactttatttaaaaaagggAAGAAACTTTCACATTCTTCA
AGTCGTTGGGCATGATGTCAGAAGTGGGGAAACAGACACACTTTTTACAG
ATTAATTGTCTATTTTAGTACACAAAACCTTTTAGTGAGTTAACCATTCA
TAGTGTTTGATAGCCCTTAGAAATGATGAAATCTTAATGTTGAAAAGCGC
AACAGATGACTTGTGGCAAACAaatcatgatatgcaccactggagagtct
tctgagaactttccaaattttccacccaatacgtcactctttttattttt
ttaagtgcTTTATTGGGTCTGATTGGGTGGAAGATTTTAGAAGACTCTCA
AGTGGtgcatatcaaaaatttaaaggaaCTTTTACGATCTActcagagaa
aattttgcaaatgtttattcttgttaaaaaatactGCGGCCATTGTATTC
TTCAGAAAAACTAATAATTTTGAGATATCTTCAAGGTTGACAAGCGTGAA
TTAAAATTTGATCTTATAGCCctccagaaaaaaatatataagttttttta
tggtagttttttttaaatcaattcgCAAAATTATTCTTGGTTATTCTCCT
TTTAAGAGAACTTGTTATATTTTTGCCATCATTTCTAGCAACTTCCGGAT
GACGAGAGGGAATATTACAAAGAGAAAGCTAAATGGGAGTGGGATAATCG
TCACACTACTGGAAAATTTCAATCTAGATCAAGGAATCATTTTGATAACA
CAGGCGCCCCCGTTACTGTAAGTCATTACCGTTCACCGATATTCGGCTCA
ATGAACGAAGACAATCGCATAGAAATAGGCTGTCCATTTCTAAGAAAACG
ATCTTGTGTtgaatgggctgttccatttaaAACCCATAGAGGGGGTGGAA
GAACCTTAACcaataattattgaaaatgtgtggataaaaaacccttggaa
aaattcttcttcacacctttaaagtgagggtggacaaatataaaaaccaa
tatttttttatatttttttagtatattttttaccccctggataaaccttt
cctcaaaccccctgaaaattcttcttctgattaccccctggaaagttTCC
TAGGAGTATGAATATAAAATGTAACGGCTCATATTTATGGAAGGACATCA
CTTATGGAAGGTCAGTCCCCAACCtggatttttgcaaaaagtcaTACTTC
CCTATAATTTTCTGACAATTTCAGAGTTACACCAtaaatttttctctaaa
tttttgaGACCTCTTAGGGATTTTTTCGCTTGCACCAGCTGGCACCTCCC
CTGGCCTGCCTACTTACAAAACCACCCTCTTCATAATTGAGAGTGACATT
TTTTATGGAATAGCACATGGAATCTTTTTTAGACTTCTAAACTAAAGAAC
ACTTTTAAGATAATGAAATTTCTGttctttaaaacattttaaattgttta
tttGAGAAAACTAAATGAGTTTCACGCCTCAACTTTAGGAGGATGTTCtc
taatttttggaataaagaaaaatcattttgaccatgtttttttttacgta
ATACATTACAGGAACGTGTGGATCTGGTGAGGGTTATGGAAGTGAAACGC
GAAAAGGAACGACAAGAAGTTTTCATGAGTTTTCTACCAGAAAGAGGTAA
AAATCTATTCTACTTTGGTTTGATATGTTACCCCTATggggggggCGTTG
GGATCAGGCTTCATTAGTTTACTACTGGATTTCCCAGCGagattttaaac
accacaagtgatttttaagcgcATTAAACTACAGTTAGAAAGTTGAGTTT
TAACtcttgagttttaacatgagacttaagagccattttttttaagagtc
tacagggtgtgatacctcaccctcttggattttgctgaaatttagaccaa
atgatctatcacacaagaaaataagactctgaaatttcaccttgatatct
caagtagttttgcagATATagtgtctcaaagataggctactaagcgaaaa
ttgacccctaaaaatcatgaactcttgtggggagcagattttgaaagcca
atgaatttttattcaagtacattagaaagctgatttacagtggatttcaa
gaactttttgtagggaatcagaaaaaaatcaaattgagtctccaaattTT
CCCTGAAAATCTCTAGttcacctcctgtagagggcttcaaactttgcgta
atctgggtttggaagcacttttagctggctgctgatggtccttgggactt
ttttgaagtaaacttttgacctggagtggtttactggtgggttttggcca
caaaaataacattttcaggatttccatctttgTGTAactgtcaaaaatgg
ccgaaaaaaacAGTCTAAAAGCTAATCatgacacttggacttagaaattt
tgtggtaaagcgcaaattattatcaaagtaggatttctgaatgagtctaa
aaagtttttgaataggatctaagagggtgaggtatcagactttctttatt
ctgaagattttttaaaaaaatggctcttaagaccttaggatctcaggatt
taaaagatcaaaatttgctccaataaggcttggaatatagcctagaagct
accgaacccctccaaagtcgaaatattcaatgaaaaaagtggaagtgcta
aattAGCAATTcccgccggaactttaaattctgaaaaacgttaaaatgca
ctgaaatctcaatatatttcgaccatgattgtagttacTTCTCTTTTGGT
CTATTTCTTGAAAGTCAAAAATCCCTGTCAAAATCCATATCTTTTTTGAT
TATACACTAAAGCCTGATAATTCATCTGGAATCTGTTCTCTGAAACAATT
AAGGTgggaaaatattattattatttgttaTTATTCTTTCACTTTAAAAG
GCGTCTTGGACCAGAAGTTTTACTTCGTATCTTTCATCTGTCTTCTGGAG
GAACCGACATTTCAACCCATAGAAGTTGCAGCGACCGAATTCAGTTTGTT
GGGTGGTCGCGAACGAAGTTTCCACAGACATTTAAATCCAGGTTTGATCG
CTTCATTTCCTACTCATTGTTTGCATTACCTTAGGCTCTAGTAGGGCATT
GCTCACAGTTTTCTAAGCAAAAAGGTCTGTTTTagataaatgaatttttt
caattcatagttcggaccccccccctccGAAAAAATGGAGAAGGggaatc
agaaattttcatgaaaaagggggTGATAGCAAGGAAgggggggTAGTTTA
AAAAGGGGGGTTTGCATGTATGTTGTAGATTATTTCAAGcacactgttat
gaaatttggtttcaaaaagaagaaagaagtttattatttcacTCAGTTTC
ACTTTCTCTcgatctaaagatatttcatatatatatatatttttttagct
atttttatccaaaatccatgggggataggcatttttaaaggtcggggatg
ccaagaaggggggggggtcatttaagaGGGAGGTCacacccctttccgca
ctaagcaatttgataaaaaaacgcTTAACAAATTGTCATCTCTAACTATA
AAACGATTgaatcttttagaaaaatacGAGCGTGGACTTTCTGATTTtac
tttcttaatttttttcttacgTCCAGGACCAATTCCTCAAGGTTACCGTT
TCAAGGCACAACAACACAGTAAGTTTTGATTTTGTGATTAGCGTTGTTGG
TAAGATGTTAAagagttttatttttgtttttagatttttaaggaaaaacg
aTTAAAGTAAAATATACAATCAACCTTTAGCCGTGCGGTTGGCTttttaa
gaatggtgtttttccatttcatcatggatattcttaaccttttttgggGG
GAAATCATCATGAAAcattcttacaacattcttagaTTTGGATCCAAAGC
CAGCAAAAATCTAACGTGTAATAAAACATACCTCAggcaaaaatttggca
tttttgtggaaccttttagcattgctggggaATAATTGACAAGTTGATGG
TAAAATGTTCTATAAAACTGGCATTCTGAGGTTGAGTTAGCCAAATTCct
tgatggtgatattcttaccatgttcttaattttttggccaatttcatcat
taatattcttataaagtatattgtATTCACGTTACTTGATTGCTTCCATG
TAAGGGTATCTGACACGACCACTTCTACACTTGTGTTTCTATACCGCcgt
taagaaaaattttctttgtattttcgtCACCAGTCTCACAAAAGCTGACC
GTGCCACTAAGAGTTAACAGATGTATGCCACATAACAACAAAATGTCCAA
AGATACTAACTAATCTTCTAAATTGTCAATCCTATTTCCAGGTGATCTTA
CCCACAAACTTCCACTGACCGGAAAGATGCAGCTGGGAGATGATTACACC
AAAATCTATGAcgaactttttcattttttatcgaaAGGAGGCCGACATAT
CCCTCCTATACACGTGAAGGtactaactgaaaaaaaaatttattggtaA Coding sequence (CDS) from alignment at sc0000172_pilon:116739..121387+ >XLOC_043058 ID=XLOC_043058|Name=XLOC_043058|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=1392bp|location=Sequence derived from alignment at sc0000172_pilon:116739..121387+ (Clytia hemisphaerica_ch_hm2_pilon)
ATGCCTTCAAAGAAAAGCAATCAGAACAAGCCCAATGGATTTGTTCTTTA
TgcaaatgaaatcaaaaaccaATTGTTGAAGGAAGGTCATTCGATTCGTA
ACATGCCTGATTTGATTGCTACTGCTAGTCCTAAATGGCAGATGCCTTCA
AAGAAAAGCAATCAGAACAAGCCCAATGGATTTGTTCTTTATgcaaatga
aatcaaaaaccaATTGTTGAAGGAAGGTCATTCGATTCGTAACATGCCTG
ATTTGATTGCTACTGCTAGTCCTAAATGGCAGCAACTTCCGGATGACGAG
AGGGAATATTACAAAGAGAAAGCTAAATGGGAGTGGGATAATCGTCACAC
TACTGGAAAATTTCAATCTAGATCAAGGAATCATTTTGATAACACAGGCG
CCCCCGTTACTCAACTTCCGGATGACGAGAGGGAATATTACAAAGAGAAA
GCTAAATGGGAGTGGGATAATCGTCACACTACTGGAAAATTTCAATCTAG
ATCAAGGAATCATTTTGATAACACAGGCGCCCCCGTTACTGAACGTGTGG
ATCTGGTGAGGGTTATGGAAGTGAAACGCGAAAAGGAACGACAAGAAGTT
TTCATGAGTTTTCTACCAGAAAGAGGAACGTGTGGATCTGGTGAGGGTTA
TGGAAGTGAAACGCGAAAAGGAACGACAAGAAGTTTTCATGAGTTTTCTA
CCAGAAAGAGGCGTCTTGGACCAGAAGTTTTACTTCGTATCTTTCATCTG
TCTTCTGGAGGAACCGACATTTCAACCCATAGAAGTTGCAGCGACCGAAT
TCAGTTTGTTGGGTGGTCGCGAACGAAGTTTCCACAGACATTTAAATCCA
GGCGTCTTGGACCAGAAGTTTTACTTCGTATCTTTCATCTGTCTTCTGGA
GGAACCGACATTTCAACCCATAGAAGTTGCAGCGACCGAATTCAGTTTGT
TGGGTGGTCGCGAACGAAGTTTCCACAGACATTTAAATCCAGGACCAATT
CCTCAAGGTTACCGTTTCAAGGCACAACAACACAGACCAATTCCTCAAGG
TTACCGTTTCAAGGCACAACAACACAGTGATCTTACCCACAAACTTCCAC
TGACCGGAAAGATGCAGCTGGGAGATGATTACACCAAAATCTATGAcgaa
ctttttcattttttatcgaaAGGAGGCCGACATATCCCTCCTATACACGT
GAAGGtactaactgaaaaaaaaatttattggtaAGTGATCTTACCCACAA
ACTTCCACTGACCGGAAAGATGCAGCTGGGAGATGATTACACCAAAATCT
ATGAcgaactttttcattttttatcgaaAGGAGGCCGACATATCCCTCCT
ATACACGTGAAGGtactaactgaaaaaaaaatttattggtaA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000172_pilon | genome | sc0000172_pilon:116739..121387 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 541-696:4494 |
| Aaloc | 499-537:3779 |
| Aaloc | 358-495:3053 |
| Aaloc | 271-354:1712 |
| Aaloc | 142-270:789 |
| Aaloc | 1-141:1 |
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