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Sequence
The following sequences are available for this feature:
mRNA from alignment at sc0000174_pilon:185105..187721+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >XLOC_042994 ID=XLOC_042994|Name=XLOC_042994|organism=Clytia hemisphaerica_ch_hm2_pilon|type=mRNA|length=2617bp|location=Sequence derived from alignment at sc0000174_pilon:185105..187721+ (Clytia hemisphaerica_ch_hm2_pilon)
AAATTTTGCATATCACTGGCACTTCTCTCCAAGGTACTGTAGAAATACTC
TGAAAACTCTTTCTTTTAATATTATTTAGTATTTACCTAAATCAAAAGTT
GGAATTTGATGTCCTTGTCAGTGgttgaattttcagttttaaggaGAGAG
AGCTCGAtttcaataaataattttttcctttgAATGACAAATCTAATGTC
TTAAAATTGATTACATCGAAATAAAACTTACAATACATCGCAGCGTCTTT
GATTTTTATAGACAGTGACAACAAATTAGCTAAATTTCTCAGGACTTTAG
GCATAATTTTTTACTTGTTTTCCTTTTTAAGCTATCATTTTGCGTTAACC
AATTCGGTGATATTGGAGAAGAGCATGATTTAGATGACCTCATTACGAAA
CGATTCCAAATCAACCATGTAGGGCCTGGTAGTAATGCCAGCTCCAGTAG
TGACATTCAACAGAACAACTCCACTAAAGAAGATGGTTTTCTTGTGCAGA
ACTTTTCTGGAGATATTGATAGACGACAAGCAGATACTCTAGATTCTATA
TTGCAAACAGTACTAAACAATTTATCTAAAACTGAAACTTTTACCGTACA
ACATTTTTCTGGTGATGACGAAAATTCGACGAAGGTCGACTCTATAAATC
ATGGTTACGGTTCTGGTTTTCTAGCAAATGAATTGCATGAACTGACCCCT
GGGAAGGTCTCTGGTACTGATGCTCAATCAGTTGAATCAACAGGCATGGA
TACAACTTCTTTAGATTCGTATGGTATTTCAGGTTCTGGTGATTCTGAGC
TACCTGGTGATTCTGAGTCAAATACACCACCAGACTTAACGGAACATGAT
AGTTTACAGAACTCCATATTTCCATTAAATGAGCAATCAAATACAGATAT
ATCTGTGAAGAATGGAGCTCAAAACACAATTTTCAAAAGCCTTGCTGGAG
TTGAATCTTCACGCAGTGAAccattaaaaagtaaaaagtctACAGTCGAA
AAGACTGTCGATCCCGGGACATTGAATTTCCTTCCAAAATTGCAAAACAA
AGAgacattgaaatttttggaCTCCGTTAATAGTAACAGAAGGAAACCGA
TTTCTAAAACACTTGCTCGGGAACAAGCCGTACGCTTCGTGAAATTCTTC
CGTGACGGCGTAACGTTAAACGTCGCTGAACGTAAGCGAAGTTACGTTCC
TACGGCTTCAAACATTCAAAGATCAAATAGACCTAGaaatgaaattcaat
ttttcacttcaaGATTTCATACCCCAAGAAAAACTTCAATGCAAGAGATT
TTCAAGCGTGATCATATCGAGATTcataaaaatattcgaaaattaGCTAA
CATGTATAAAGGAAATTCGTTGCTTAGCGACCTATCGAAAATGACCAATC
AatggaggggatataatgaTAATAGGAGACTGGATTCTAATCCTGTTTGG
ATGAAGTTTTTGAGAGACGCCATGAGACCACATGAAATGCTTAATATGAA
TGCGGACAATCGACAAAGACTTCTAGGTTATATGTATAGACCATCAAATG
GAAATAAAGATACGATGCTAGCGAAAGATggaaagcttttcaaaaaggtt
aTTACGGTTATTTACTTGTCGTTTTTTAAACTGCTGATCGTAGTATCAAT
TATTTTATTAATCTGGTTGAGTAATTTGGTCATCCATTAGAAAGTTCTAT
GTTTATGTAGGCTCTGCATACATATATTCCTACGTTTCGGGTGTAAgtaa
gagtaaggcctaaaagacTGGACTTAGAGCCTAGATCTTTATTCTCAacc
gtaatttttttaaacatttttttattactaTTAGATTTAAAATGAGTACA
AgacaactttcgttttctcgatCAGTTGCAAACCTTTTCAAAGATAAATG
CGCATTTCAGCTAtttttttGAATTCGTTACCTTTTAACCCTTCCTGACA
GAGGAGTGTTTAGCGCTACTATACAATTAAGGCACATGGTATAATCAGCT
CAATTTTTGATTGGTTTTAGGTTGGTAGTATAAATATCAAACCTGGCGAA
ATCCAAGCTCACTTCATGAATGATCTACATAAAAAGCAATCCATGTATGC
AACACCAGGAATTAAGCCTCATCCTTTTGTCAACCCACAAAGCCATGCTA
CCCAACCAAACACTCAGGCCACTCAACCAAATTACAAGCCATCGTATAAT
GTACAGACTTTCCAATCCGTACAACAACACCCTCCACAGATGACACCATA
TTCAAATTATCCTCCTCAACAGTTCTGGACACAACCGAAAACTAGACAAT
CTCAACTGTATCCCCATATTAACGGTATCAATTCTTGCTTACCGGAAAAC
TCACTTTGTGATGCAGGACATGATGAACAATGTTGTGGTCCAGCCTCTTT
TTGTATTGATTACTGGGGCACTGGGAAATGTATATCCATGAGTAAAAATC
CAGAATTGAATGACCATAGAAACACTTATAAAATGTGGAATAATTTAAAC
GCTAAGAGACAGTTCAATAGGATGTTAAATCAAGTGAAAAATGAGATTTC
GTTGTACGGGTTCCAGAAAAAGTTGAGTGATATATTGAATACAGCgaaat
tttcgaagaaaaagtGA Coding sequence (CDS) from alignment at sc0000174_pilon:185105..187721+ >XLOC_042994 ID=XLOC_042994|Name=XLOC_042994|organism=Clytia hemisphaerica_ch_hm2_pilon|type=CDS|length=3792bp|location=Sequence derived from alignment at sc0000174_pilon:185105..187721+ (Clytia hemisphaerica_ch_hm2_pilon)
AAATTTTGCATATCACTGGCACTTCTCTCCAAGAAATTTTGCATATCACT
GGCACTTCTCTCCAAGCTATCATTTTGCGTTAACCAATTCGGTGATATTG
GAGAAGAGCATGATTTAGATGACCTCATTACGAAACGATTCCAAATCAAC
CATGTAGGGCCTGGTAGTAATGCCAGCTCCAGTAGTGACATTCAACAGAA
CAACTCCACTAAAGAAGATGGTTTTCTTGTGCAGAACTTTTCTGGAGATA
TTGATAGACGACAAGCAGATACTCTAGATTCTATATTGCAAACAGTACTA
AACAATTTATCTAAAACTGAAACTTTTACCGTACAACATTTTTCTGGTGA
TGACGAAAATTCGACGAAGGTCGACTCTATAAATCATGGTTACGGTTCTG
GTTTTCTAGCAAATGAATTGCATGAACTGACCCCTGGGAAGGTCTCTGGT
ACTGATGCTCAATCAGTTGAATCAACAGGCATGGATACAACTTCTTTAGA
TTCGTATGGTATTTCAGGTTCTGGTGATTCTGAGCTACCTGGTGATTCTG
AGTCAAATACACCACCAGACTTAACGGAACATGATAGTTTACAGAACTCC
ATATTTCCATTAAATGAGCAATCAAATACAGATATATCTGTGAAGAATGG
AGCTCAAAACACAATTTTCAAAAGCCTTGCTGGAGTTGAATCTTCACGCA
GTGAAccattaaaaagtaaaaagtctACAGTCGAAAAGACTGTCGATCCC
GGGACATTGAATTTCCTTCCAAAATTGCAAAACAAAGAgacattgaaatt
tttggaCTCCGTTAATAGTAACAGAAGGAAACCGATTTCTAAAACACTTG
CTCGGGAACAAGCCGTACGCTTCGTGAAATTCTTCCGTGACGGCGTAACG
TTAAACGTCGCTGAACGTAAGCGAAGTTACGTTCCTACGGCTTCAAACAT
TCAAAGATCAAATAGACCTAGaaatgaaattcaatttttcacttcaaGAT
TTCATACCCCAAGAAAAACTTCAATGCAAGAGATTTTCAAGCGTGATCAT
ATCGAGATTcataaaaatattcgaaaattaGCTAACATGTATAAAGGAAA
TTCGTTGCTTAGCGACCTATCGAAAATGACCAATCAatggaggggatata
atgaTAATAGGAGACTGGATTCTAATCCTGTTTGGATGAAGTTTTTGAGA
GACGCCATGAGACCACATGAAATGCTTAATATGAATGCGGACAATCGACA
AAGACTTCTAGGTTATATGTATAGACCATCAAATGGAAATAAAGATACGA
TGCTAGCGAAAGATggaaagcttttcaaaaagCTATCATTTTGCGTTAAC
CAATTCGGTGATATTGGAGAAGAGCATGATTTAGATGACCTCATTACGAA
ACGATTCCAAATCAACCATGTAGGGCCTGGTAGTAATGCCAGCTCCAGTA
GTGACATTCAACAGAACAACTCCACTAAAGAAGATGGTTTTCTTGTGCAG
AACTTTTCTGGAGATATTGATAGACGACAAGCAGATACTCTAGATTCTAT
ATTGCAAACAGTACTAAACAATTTATCTAAAACTGAAACTTTTACCGTAC
AACATTTTTCTGGTGATGACGAAAATTCGACGAAGGTCGACTCTATAAAT
CATGGTTACGGTTCTGGTTTTCTAGCAAATGAATTGCATGAACTGACCCC
TGGGAAGGTCTCTGGTACTGATGCTCAATCAGTTGAATCAACAGGCATGG
ATACAACTTCTTTAGATTCGTATGGTATTTCAGGTTCTGGTGATTCTGAG
CTACCTGGTGATTCTGAGTCAAATACACCACCAGACTTAACGGAACATGA
TAGTTTACAGAACTCCATATTTCCATTAAATGAGCAATCAAATACAGATA
TATCTGTGAAGAATGGAGCTCAAAACACAATTTTCAAAAGCCTTGCTGGA
GTTGAATCTTCACGCAGTGAAccattaaaaagtaaaaagtctACAGTCGA
AAAGACTGTCGATCCCGGGACATTGAATTTCCTTCCAAAATTGCAAAACA
AAGAgacattgaaatttttggaCTCCGTTAATAGTAACAGAAGGAAACCG
ATTTCTAAAACACTTGCTCGGGAACAAGCCGTACGCTTCGTGAAATTCTT
CCGTGACGGCGTAACGTTAAACGTCGCTGAACGTAAGCGAAGTTACGTTC
CTACGGCTTCAAACATTCAAAGATCAAATAGACCTAGaaatgaaattcaa
tttttcacttcaaGATTTCATACCCCAAGAAAAACTTCAATGCAAGAGAT
TTTCAAGCGTGATCATATCGAGATTcataaaaatattcgaaaattaGCTA
ACATGTATAAAGGAAATTCGTTGCTTAGCGACCTATCGAAAATGACCAAT
CAatggaggggatataatgaTAATAGGAGACTGGATTCTAATCCTGTTTG
GATGAAGTTTTTGAGAGACGCCATGAGACCACATGAAATGCTTAATATGA
ATGCGGACAATCGACAAAGACTTCTAGGTTATATGTATAGACCATCAAAT
GGAAATAAAGATACGATGCTAGCGAAAGATggaaagcttttcaaaaagGT
TGGTAGTATAAATATCAAACCTGGCGAAATCCAAGCTCACTTCATGAATG
ATCTACATAAAAAGCAATCCATGTATGCAACACCAGGAATTAAGCCTCAT
CCTTTTGTCAACCCACAAAGCCATGCTACCCAACCAAACACTCAGGCCAC
TCAACCAAATTACAAGCCATCGTATAATGTACAGACTTTCCAATCCGTAC
AACAACACCCTCCACAGATGACACCATATTCAAATTATCCTCCTCAACAG
TTCTGGACACAACCGAAAACTAGACAATCTCAACTGTATCCCCATATTAA
CGGTATCAATTCTTGCTTACCGGAAAACTCACTTTGTGATGCAGGACATG
ATGAACAATGTTGTGGTCCAGCCTCTTTTTGTATTGATTACTGGGGCACT
GGGAAATGTATATCCATGAGTAAAAATCCAGAATTGAATGACCATAGAAA
CACTTATAAAATGTGGAATAATTTAAACGCTAAGAGACAGTTCAATAGGA
TGTTAAATCAAGTGAAAAATGAGATTTCGTTGTACGGGTTCCAGAAAAAG
TTGAGTGATATATTGAATACAGCgaaattttcgaagaaaaagtGAGTTGG
TAGTATAAATATCAAACCTGGCGAAATCCAAGCTCACTTCATGAATGATC
TACATAAAAAGCAATCCATGTATGCAACACCAGGAATTAAGCCTCATCCT
TTTGTCAACCCACAAAGCCATGCTACCCAACCAAACACTCAGGCCACTCA
ACCAAATTACAAGCCATCGTATAATGTACAGACTTTCCAATCCGTACAAC
AACACCCTCCACAGATGACACCATATTCAAATTATCCTCCTCAACAGTTC
TGGACACAACCGAAAACTAGACAATCTCAACTGTATCCCCATATTAACGG
TATCAATTCTTGCTTACCGGAAAACTCACTTTGTGATGCAGGACATGATG
AACAATGTTGTGGTCCAGCCTCTTTTTGTATTGATTACTGGGGCACTGGG
AAATGTATATCCATGAGTAAAAATCCAGAATTGAATGACCATAGAAACAC
TTATAAAATGTGGAATAATTTAAACGCTAAGAGACAGTTCAATAGGATGT
TAAATCAAGTGAAAAATGAGATTTCGTTGTACGGGTTCCAGAAAAAGTTG
AGTGATATATTGAATACAGCgaaattttcgaagaaaaagtGA
Gene-mRNA-Prot
The following polypeptide feature(s) derives from this mRNA:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000174_pilon | genome | sc0000174_pilon:185105..187721 + |
Properties
| Property Name | Value |
|---|
| Aaloc | 1540-1893:2264 |
| Aaloc | 1303-1539:2021 |
| Aaloc | 991-1302:1286 |
| Aaloc | 646-984:947 |
| Aaloc | 34-645:332 |
| Aaloc | 1-33:1 |
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